RchiOBHm_Chr6g0272431

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
32781478 .. 32782050
573 bp
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UTR
Exon/CDS
Intron
PRQ24441

Sequence Viewer

Length: 231 bp
ATGATTGAAATGGTGATTATTATGTGTTCTTTGGTTGTTTGCTTCGGTCCCTTTTCTGTAATAATGCTGGTTTTGTTTTCTACTTTTGAAACTCACCTTCTTAATCCAACTGTAGGGGGAGGAAACCTAACTAGCTCAATTCAGTCATTATCTGGAAATGCTAGGGAATTACTAAACGTTTGGTTGAGAATTCAAGCAGCAAAGGAAACTGTTTACAAACTAAGTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

8.35

Weight (kDa)

5.63

Isoelectric Point (pI)

29.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019139)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06225 AT2G31081
fragaria_vesca FvH4_3g08100
prunus_persica Prupe.3G124600_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0272431
rosa_roxburghii Rroxscaffold_2G00115070
rosa_rugosa Rorug04G0449200
rosa_wichuraiana Rw2G027170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 177
AcsI RAATTY 1 cut(s) 189
AfiI CCNNNNNNNGG 1 cut(s) 113
AgsI TTSAA 3 cut(s) 8, 89, 194
AluBI AGCT 1 cut(s) 135
AluI AGCT 1 cut(s) 135
ApeKI GCWGC 1 cut(s) 197
ApoI RAATTY 1 cut(s) 189
AspS9I GGNCC 1 cut(s) 47
AsuHPI GGTGA 2 cut(s) 25, 86
AvaII GGWCC 1 cut(s) 47
BbvI GCAGC 1 cut(s) 209
BfaI CTAG 2 cut(s) 132, 162
BfmI CTRYAG 1 cut(s) 111
BisI GCNGC 1 cut(s) 198
BlsI GCNGC 1 cut(s) 199
Bme18I GGWCC 1 cut(s) 47
BmgT120I GGNCC 1 cut(s) 47
BmiI GGNNCC 1 cut(s) 49
Bsc4I CCNNNNNNNGG 1 cut(s) 113
BseLI CCNNNNNNNGG 1 cut(s) 113
BseXI GCAGC 1 cut(s) 209
BslFI GGGAC 1 cut(s) 33
BslI CCNNNNNNNGG 1 cut(s) 113
BsmFI GGGAC 1 cut(s) 33
BspLI GGNNCC 1 cut(s) 49
Bst4CI ACNGT 2 cut(s) 112, 211
BstDEI CTNAG 1 cut(s) 221
BstSFI CTRYAG 1 cut(s) 111
BstV1I GCAGC 1 cut(s) 209
Cfr13I GGNCC 1 cut(s) 47
CviJI RGCY 1 cut(s) 135
CviKI_1 RGCY 1 cut(s) 135
DdeI CTNAG 1 cut(s) 221
Eco47I GGWCC 1 cut(s) 47
EcoRI GAATTC 1 cut(s) 189
FaiI YATR 1 cut(s) 23
FaqI GGGAC 1 cut(s) 33
Fnu4HI GCNGC 1 cut(s) 198
Fsp4HI GCNGC 1 cut(s) 198
FspBI CTAG 2 cut(s) 132, 162
GluI GCNGC 1 cut(s) 198
HphI GGTGA 2 cut(s) 25, 86
Hpy166II GTNNAC 1 cut(s) 214
Hpy188III TCNNGA 1 cut(s) 153
Hpy8I GTNNAC 1 cut(s) 214
HpyAV CCTTC 1 cut(s) 107
HpyCH4III ACNGT 2 cut(s) 112, 211
HpyCH4IV ACGT 1 cut(s) 177
HpyF3I CTNAG 1 cut(s) 221
HpySE526I ACGT 1 cut(s) 177
LpnPI CCDG 2 cut(s) 53, 138
Lsp1109I GCAGC 1 cut(s) 209
MaeI CTAG 2 cut(s) 132, 162
MaeII ACGT 1 cut(s) 177
MluCI AATT 3 cut(s) 138, 167, 189
MmeI TCCRAC 1 cut(s) 131
MnlI CCTC 1 cut(s) 113
MseI TTAA 1 cut(s) 102
NlaIV GGNNCC 1 cut(s) 49
PkrI GCNGC 1 cut(s) 199
Psp1406I AACGTT 1 cut(s) 177
PspN4I GGNNCC 1 cut(s) 49
PspPI GGNCC 1 cut(s) 47
SaqAI TTAA 1 cut(s) 102
SatI GCNGC 1 cut(s) 198
Sau96I GGNCC 1 cut(s) 47
SetI ASST 4 cut(s) 99, 129, 137, 180
SfcI CTRYAG 1 cut(s) 111
SgeI CNNG 5 cut(s) 80, 144, 165, 174, 206
SinI GGWCC 1 cut(s) 47
Sse9I AATT 3 cut(s) 138, 167, 189
SspMI CTAG 2 cut(s) 132, 162
TaaI ACNGT 2 cut(s) 112, 211
TaiI ACGT 1 cut(s) 180
TaqII GACCGA 1 cut(s) 35
TasI AATT 3 cut(s) 138, 167, 189
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TseI GCWGC 1 cut(s) 197
VpaK11BI GGWCC 1 cut(s) 47
XapI RAATTY 1 cut(s) 189
XspI CTAG 2 cut(s) 132, 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.