FvH4_3g08100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0019139
Physical Location & Seq
Reverse (-)
4771820 .. 4772778
959 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g08100.t1

Sequence Viewer

Length: 531 bp
ATGGTTAAGAGCTGGAGAGTTTATACCTTCTTTGTAGTAATGCTGCTTCTGTTTTCGCCTTCTGAAACTCGCCATCTTAATCAACGCCAAGAAGGAAGGAACCTGAGCAGCTCATCAAGTCGATCATTACCTGGAAATGCTAAGGCATTACTGAACATTTGGCTGAGAATTCAAGCCGCAAAGAAGACTGTTTACAAACCACAGAGATTGAGTCCTGGAGAGGACGTCCGCACAGCCCTTAAAGTGCGGACATCCCTCCGTTCTCTACCGTCCGACGTCGACGACGCCTTTTCTTCTTGTCGGAGGACAACAGACCTTGATACTGAGCTTTCCCTTGCTGGTGGACTCACCGGCTGCAAGTTTCCATGCCAGCCGACCTTGATCAGTCTTGAAGTTTTCATTGAGGTTGCTGCCCAGAGCTCCGACCCCGATCTGTCTGACCTTCTTCTTTATGTCAACGCCGTCCCGGAGGCCTATGCTGTCCTCCGGCAAGAAGAAAAGGCGTTGTCGATGCCGAACGGTGGAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

177

Amino Acids

19.49

Weight (kDa)

8.47

Isoelectric Point (pI)

62.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019139)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06225 AT2G31081
fragaria_vesca FvH4_3g08100
prunus_persica Prupe.3G124600_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0272431
rosa_roxburghii Rroxscaffold_2G00115070
rosa_rugosa Rorug04G0449200
rosa_wichuraiana Rw2G027170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 228, 279
AccI GTMKAC 1 cut(s) 279
AciI CCGC 3 cut(s) 177, 229, 247
AcsI RAATTY 1 cut(s) 168
AcyI GRCGYC 3 cut(s) 225, 276, 285
AfiI CCNNNNNNNGG 1 cut(s) 521
AgsI TTSAA 2 cut(s) 173, 392
AjnI CCWGG 2 cut(s) 130, 214
AluBI AGCT 4 cut(s) 12, 111, 328, 420
AluI AGCT 4 cut(s) 12, 111, 328, 420
Alw21I GWGCWC 1 cut(s) 422
AoxI GGCC 1 cut(s) 471
ApeKI GCWGC 4 cut(s) 43, 108, 354, 410
ApoI RAATTY 1 cut(s) 168
AsuC2I CCSGG 1 cut(s) 467
AsuHPI GGTGA 1 cut(s) 340
BanII GRGCYC 1 cut(s) 422
BarI GAAGNNNNNNTAC 4 cut(s) 30, 62, 176, 208
BbsI GAAGAC 1 cut(s) 191
Bbv12I GWGCWC 1 cut(s) 422
BbvI GCAGC 4 cut(s) 30, 120, 341, 397
BccI CCATC 1 cut(s) 81
BceAI ACGGC 1 cut(s) 446
BciT130I CCWGG 2 cut(s) 132, 216
BclI TGATCA 1 cut(s) 381
BcnI CCSGG 1 cut(s) 467
BisI GCNGC 5 cut(s) 44, 109, 177, 355, 411
BlsI GCNGC 5 cut(s) 45, 110, 178, 356, 412
Bme1390I CCNGG 3 cut(s) 132, 216, 467
BmiI GGNNCC 1 cut(s) 101
BmrFI CCNGG 3 cut(s) 132, 216, 467
BmsI GCATC 1 cut(s) 501
BpiI GAAGAC 1 cut(s) 191
BpmI CTGGAG 2 cut(s) 34, 237
Bpu10I CCTNAGC 2 cut(s) 104, 141
BpuMI CCSGG 1 cut(s) 467
BsaHI GRCGYC 3 cut(s) 225, 276, 285
BsaXI ACNNNNNCTCC 2 cut(s) 210, 240
Bsc4I CCNNNNNNNGG 1 cut(s) 521
Bse118I RCCGGY 1 cut(s) 350
BseBI CCWGG 2 cut(s) 132, 216
BseGI GGATG 1 cut(s) 251
BseLI CCNNNNNNNGG 1 cut(s) 521
BseMII CTCAG 3 cut(s) 95, 155, 315
BseXI GCAGC 4 cut(s) 30, 120, 341, 397
BshFI GGCC 1 cut(s) 473
BsiHKAI GWGCWC 1 cut(s) 422
BsiSI CCGG 3 cut(s) 351, 467, 487
BslFI GGGAC 1 cut(s) 449
BslI CCNNNNNNNGG 1 cut(s) 521
BsmFI GGGAC 1 cut(s) 449
BsnI GGCC 1 cut(s) 473
Bsp1286I GDGCHC 1 cut(s) 422
Bsp143I GATC 3 cut(s) 122, 381, 430
BspACI CCGC 3 cut(s) 177, 229, 247
BspANI GGCC 1 cut(s) 473
BspCNI CTCAG 3 cut(s) 96, 156, 316
BspLI GGNNCC 1 cut(s) 101
BsrFI RCCGGY 1 cut(s) 350
BssAI RCCGGY 1 cut(s) 350
BssMI GATC 3 cut(s) 122, 381, 430
BssNI GRCGYC 3 cut(s) 225, 276, 285
Bst2UI CCWGG 2 cut(s) 132, 216
Bst4CI ACNGT 3 cut(s) 190, 270, 521
BstACI GRCGYC 3 cut(s) 225, 276, 285
BstC8I GCNNGC 1 cut(s) 371
BstDEI CTNAG 4 cut(s) 104, 141, 164, 324
BstF5I GGATG 1 cut(s) 251
BstKTI GATC 3 cut(s) 125, 384, 433
BstMBI GATC 3 cut(s) 122, 381, 430
BstNI CCWGG 2 cut(s) 132, 216
BstSCI CCNGG 3 cut(s) 130, 214, 465
BstV1I GCAGC 4 cut(s) 30, 120, 341, 397
BstV2I GAAGAC 1 cut(s) 191
BsuRI GGCC 1 cut(s) 473
BtsCI GGATG 1 cut(s) 251
Cac8I GCNNGC 1 cut(s) 371
Cfr10I RCCGGY 1 cut(s) 350
CseI GACGC 1 cut(s) 293
CspCI CAANNNNNGTGG 2 cut(s) 189, 224
CviAII CATG 1 cut(s) 366
DdeI CTNAG 4 cut(s) 104, 141, 164, 324
DpnI GATC 3 cut(s) 124, 383, 432
DpnII GATC 3 cut(s) 122, 381, 430
Ecl136II GAGCTC 1 cut(s) 420
Eco147I AGGCCT 1 cut(s) 473
Eco24I GRGCYC 1 cut(s) 422
Eco53kI GAGCTC 1 cut(s) 420
EcoICRI GAGCTC 1 cut(s) 420
EcoRI GAATTC 1 cut(s) 168
EcoRII CCWGG 2 cut(s) 130, 214
EcoT38I GRGCYC 1 cut(s) 422
FaeI CATG 1 cut(s) 369
FaiI YATR 4 cut(s) 24, 367, 453, 477
FaqI GGGAC 1 cut(s) 449
FatI CATG 1 cut(s) 365
FbaI TGATCA 1 cut(s) 381
FblI GTMKAC 1 cut(s) 279
Fnu4HI GCNGC 5 cut(s) 44, 109, 177, 355, 411
FokI GGATG 1 cut(s) 238
FriOI GRGCYC 1 cut(s) 422
Fsp4HI GCNGC 5 cut(s) 44, 109, 177, 355, 411
GluI GCNGC 5 cut(s) 44, 109, 177, 355, 411
GsuI CTGGAG 2 cut(s) 34, 237
HaeIII GGCC 1 cut(s) 473
HapII CCGG 3 cut(s) 351, 467, 487
HgaI GACGC 1 cut(s) 293
Hin1I GRCGYC 3 cut(s) 225, 276, 285
Hin1II CATG 1 cut(s) 369
HincII GTYRAC 2 cut(s) 280, 457
HindII GTYRAC 2 cut(s) 280, 457
HinfI GANTC 2 cut(s) 211, 345
HpaII CCGG 3 cut(s) 351, 467, 487
HphI GGTGA 1 cut(s) 340
Hpy166II GTNNAC 4 cut(s) 193, 280, 344, 457
Hpy188I TCNGA 5 cut(s) 64, 274, 303, 424, 439
Hpy188III TCNNGA 1 cut(s) 389
Hpy8I GTNNAC 4 cut(s) 193, 280, 344, 457
Hpy99I CGWCG 4 cut(s) 278, 281, 284, 287
HpyAV CCTTC 5 cut(s) 37, 69, 86, 90, 452
HpyCH4III ACNGT 3 cut(s) 190, 270, 521
HpyCH4IV ACGT 2 cut(s) 225, 276
HpyCH4V TGCA 1 cut(s) 357
HpyF3I CTNAG 4 cut(s) 104, 141, 164, 324
HpySE526I ACGT 2 cut(s) 225, 276
Hsp92I GRCGYC 3 cut(s) 225, 276, 285
Hsp92II CATG 1 cut(s) 369
Ksp22I TGATCA 1 cut(s) 381
Kzo9I GATC 3 cut(s) 122, 381, 430
LmnI GCTCC 1 cut(s) 425
Lsp1109I GCAGC 4 cut(s) 30, 120, 341, 397
LweI GCATC 1 cut(s) 501
MaeII ACGT 2 cut(s) 225, 276
MalI GATC 3 cut(s) 124, 383, 432
MboI GATC 3 cut(s) 122, 381, 430
MboII GAAGA 4 cut(s) 196, 285, 437, 506
MhlI GDGCHC 1 cut(s) 422
MluCI AATT 1 cut(s) 168
MlyI GAGTC 2 cut(s) 220, 339
MmeI TCCRAC 3 cut(s) 281, 297, 447
MnlI CCTC 6 cut(s) 214, 266, 297, 397, 463, 494
MseI TTAA 3 cut(s) 6, 78, 240
MspI CCGG 3 cut(s) 351, 467, 487
MspR9I CCNGG 3 cut(s) 132, 216, 467
MvaI CCWGG 2 cut(s) 132, 216
NciI CCSGG 1 cut(s) 467
NdeII GATC 3 cut(s) 122, 381, 430
NlaIII CATG 1 cut(s) 369
NlaIV GGNNCC 1 cut(s) 101
PceI AGGCCT 1 cut(s) 473
PfoI TCCNGGA 2 cut(s) 214, 465
PkrI GCNGC 5 cut(s) 45, 110, 178, 356, 412
PleI GAGTC 2 cut(s) 219, 339
PpsI GAGTC 2 cut(s) 219, 339
Psp124BI GAGCTC 1 cut(s) 422
Psp6I CCWGG 2 cut(s) 130, 214
PspGI CCWGG 2 cut(s) 130, 214
PspN4I GGNNCC 1 cut(s) 101
SacI GAGCTC 1 cut(s) 422
SalI GTCGAC 1 cut(s) 278
SaqAI TTAA 3 cut(s) 6, 78, 240
SatI GCNGC 5 cut(s) 44, 109, 177, 355, 411
Sau3AI GATC 3 cut(s) 122, 381, 430
SchI GAGTC 2 cut(s) 220, 339
ScrFI CCNGG 3 cut(s) 132, 216, 467
SduI GDGCHC 1 cut(s) 422
SfaNI GCATC 1 cut(s) 501
SgrDI CGTCGACG 1 cut(s) 278
Sse9I AATT 1 cut(s) 168
SseBI AGGCCT 1 cut(s) 473
SsiI CCGC 3 cut(s) 177, 229, 247
SstI GAGCTC 1 cut(s) 422
StuI AGGCCT 1 cut(s) 473
StyD4I CCNGG 3 cut(s) 130, 214, 465
TaaI ACNGT 3 cut(s) 190, 270, 521
TaiI ACGT 2 cut(s) 228, 279
TaqI TCGA 3 cut(s) 121, 279, 509
TasI AATT 1 cut(s) 168
TauI GCSGC 1 cut(s) 179
Tru1I TTAA 3 cut(s) 6, 78, 240
Tru9I TTAA 3 cut(s) 6, 78, 240
TseI GCWGC 4 cut(s) 43, 108, 354, 410
TspDTI ATGAA 1 cut(s) 388
TspGWI ACGGA 1 cut(s) 248
XapI RAATTY 1 cut(s) 168
XmiI GTMKAC 1 cut(s) 279
ZraI GACGTC 2 cut(s) 226, 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.