AT1G06570

4-hydroxyphenylpyruvate dioxygenase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
2011885 .. 2013545
1661 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G06570.2

Sequence Viewer

Length: 1338 bp
ATGGGCCACCAAAACGCCGCCGTTTCAGAGAATCAAAACCATGATGACGGCGCTGCGTCGTCGCCGGGATTCAAGCTCGTCGGATTTTCCAAGTTCGTAAGAAAGAATCCAAAGTCTGATAAATTCAAGGTTAAGCGCTTCCATCACATCGAGTTCTGGTGCGGCGACGCAACCAACGTCGCTCGTCGCTTCTCCTGGGGTCTGGGGATGAGATTCTCCGCCAAATCCGATCTTTCCACCGGAAACATGGTTCACGCCTCTTACCTACTCACCTCCGGTGACCTCCGATTCCTTTTCACTGCTCCTTACTCTCCGTCTCTCTCCGCCGGAGAGATTAAACCGACAACCACAGCTTCTATCCCAAGTTTCGATCACGGCTCTTGTCGTTCCTTCTTCTCTTCACATGGTCTCGGTGTTAGAGCCGTTGCGATTGAAGTAGAAGACGCAGAGTCAGCTTTCTCCATCAGTGTAGCTAATGGCGCTATTCCTTCGTCGCCTCCTATCGTCCTCAATGAAGCAGTTACGATCGCTGAGGTTAAACTATACGGCGATGTTGTTCTCCGATATGTTAGTTACAAAGCAGAAGATACCGAAAAATCCGAATTCTTGCCAGGGTTCGAGCGTGTAGAGGATGCGTCGTCGTTCCCATTGGATTATGGTATCCGGCGGCTTGACCACGCCGTGGGAAACGTTCCTGAGCTTGGTCCGGCTTTAACTTATGTAGCGGGGTTCACTGGTTTTCACCAATTCGCAGAGTTCACAGCAGACGACGTTGGAACCGCCGAGAGCGGTTTAAATTCAGCGGTCCTGGCTAGCAATGATGAAATGGTTCTTCTACCGATTAACGAGCCAGTGCACGGAACAAAGAGGAAGAGTCAGATTCAGACGTATTTGGAACATAACGAAGGCGCAGGGCTACAACATCTGGCTCTGATGAGTGAAGACATATTCAGGACCCTGAGAGAGATGAGGAAGAGGAGCAGTATTGGAGGATTCGACTTCATGCCTTCTCCTCCGCCTACTTACTACCAGAATCTCAAGAAACGGGTCGGCGACGTGCTCAGCGATGATCAGATCAAGGAGTGTGAGGAATTAGGGATTCTTGTAGACAGAGATGATCAAGGGACGTTGCTTCAAATCTTCACAAAACCACTAGGTGACAGGCCGACGATATTTATAGAGATAATCCAGAGAGTAGGATGCATGATGAAAGATGAGGAAGGGAAGGCTTACCAGAGTGGAGGATGTGGTGGTTTTGGCAAAGGCAATTTCTCTGAGCTCTTCAAGTCCATTGAAGAATACGAAAAGACTCTTGAAGCCAAACAGTTAGTGGGATGA

Protein Analysis

445

Amino Acids

48.82

Weight (kDa)

5.47

Isoelectric Point (pI)

42.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 682
AccBSI CCGCTC 1 cut(s) 789
AccI GTMKAC 1 cut(s) 1107
AclI AACGTT 1 cut(s) 690
AcsI RAATTY 3 cut(s) 122, 602, 796
AdeI CACNNNGTG 2 cut(s) 682, 1157
AfeI AGCGCT 1 cut(s) 137
AfiI CCNNNNNNNGG 3 cut(s) 682, 701, 857
AgsI TTSAA 7 cut(s) 73, 127, 434, 1136, 1285, 1295, 1316
AhdI GACNNNNNGTC 1 cut(s) 448
AjiI CACGTC 1 cut(s) 1057
AjnI CCWGG 3 cut(s) 194, 610, 807
AloI GAACNNNNNNTCC 2 cut(s) 234, 266
AluBI AGCT 6 cut(s) 76, 353, 455, 473, 700, 1279
AluI AGCT 6 cut(s) 76, 353, 455, 473, 700, 1279
Alw21I GWGCWC 3 cut(s) 858, 1062, 1281
Alw26I GTCTC 2 cut(s) 321, 413
Alw44I GTGCAC 1 cut(s) 854
Aor51HI AGCGCT 1 cut(s) 137
AoxI GGCC 2 cut(s) 4, 1163
ApaLI GTGCAC 1 cut(s) 854
ApeKI GCWGC 1 cut(s) 53
ApoI RAATTY 3 cut(s) 122, 602, 796
Asp700I GAANNNNTTC 1 cut(s) 828
AspLEI GCGC 4 cut(s) 53, 138, 482, 911
AspS9I GGNCC 4 cut(s) 4, 704, 805, 954
AsuC2I CCSGG 1 cut(s) 66
AsuHPI GGTGA 4 cut(s) 262, 290, 734, 1169
AsuNHI GCTAGC 1 cut(s) 812
AvaII GGWCC 3 cut(s) 704, 805, 954
BaeGI GKGCMC 1 cut(s) 858
BanII GRGCYC 1 cut(s) 1281
BbsI GAAGAC 2 cut(s) 447, 948
Bbv12I GWGCWC 3 cut(s) 858, 1062, 1281
BbvCI CCTCAGC 1 cut(s) 531
BbvI GCAGC 1 cut(s) 40
BccI CCATC 2 cut(s) 150, 470
BceAI ACGGC 6 cut(s) 5, 64, 391, 407, 562, 665
BciT130I CCWGG 3 cut(s) 196, 612, 809
BciVI GTATCC 1 cut(s) 671
BclI TGATCA 2 cut(s) 1069, 1117
BcnI CCSGG 1 cut(s) 66
BcoDI GTCTC 2 cut(s) 321, 413
BfaI CTAG 2 cut(s) 813, 1154
BfoI RGCGCY 3 cut(s) 54, 139, 483
BfuI GTATCC 1 cut(s) 671
BisI GCNGC 4 cut(s) 18, 54, 163, 668
BlpI GCTNAGC 1 cut(s) 1061
BlsI GCNGC 4 cut(s) 19, 55, 164, 669
Bme1390I CCNGG 4 cut(s) 66, 196, 612, 809
Bme18I GGWCC 3 cut(s) 704, 805, 954
BmeRI GACNNNNNGTC 1 cut(s) 448
BmgBI CACGTC 1 cut(s) 1057
BmgT120I GGNCC 4 cut(s) 4, 704, 805, 954
BmiI GGNNCC 2 cut(s) 778, 956
BmrFI CCNGG 4 cut(s) 66, 196, 612, 809
BmsI GCATC 2 cut(s) 622, 1190
BmtI GCTAGC 1 cut(s) 816
BpiI GAAGAC 2 cut(s) 447, 948
Bpu10I CCTNAGC 2 cut(s) 531, 696
Bpu1102I GCTNAGC 1 cut(s) 1061
BpuEI CTTGAG 1 cut(s) 1022
BpuMI CCSGG 1 cut(s) 66
BsaI GGTCTC 1 cut(s) 413
BsaJI CCNNGG 3 cut(s) 195, 611, 681
BsaWI WCCGGW 2 cut(s) 239, 275
Bsc4I CCNNNNNNNGG 3 cut(s) 682, 701, 857
Bse1I ACTGG 2 cut(s) 739, 851
Bse3DI GCAATG 1 cut(s) 823
BseBI CCWGG 3 cut(s) 196, 612, 809
BseDI CCNNGG 3 cut(s) 195, 611, 681
BseGI GGATG 4 cut(s) 213, 637, 1205, 1250
BseLI CCNNNNNNNGG 3 cut(s) 682, 701, 857
BseMI GCAATG 1 cut(s) 823
BseMII CTCAG 5 cut(s) 522, 687, 950, 1075, 1266
BseNI ACTGG 2 cut(s) 739, 851
BseRI GAGGAG 2 cut(s) 991, 1002
BseSI GKGCMC 1 cut(s) 858
BseXI GCAGC 1 cut(s) 40
Bsh1285I CGRYCG 1 cut(s) 528
BshFI GGCC 2 cut(s) 6, 1165
BsiEI CGRYCG 1 cut(s) 528
BsiHKAI GWGCWC 3 cut(s) 858, 1062, 1281
BsiSI CCGG 6 cut(s) 65, 240, 276, 327, 664, 707
BslFI GGGAC 1 cut(s) 1138
BslI CCNNNNNNNGG 3 cut(s) 682, 701, 857
BsmAI GTCTC 2 cut(s) 321, 413
BsmBI CGTCTC 1 cut(s) 321
BsmFI GGGAC 1 cut(s) 1138
BsnI GGCC 2 cut(s) 6, 1165
Bso31I GGTCTC 1 cut(s) 413
Bsp1286I GDGCHC 3 cut(s) 858, 1062, 1281
Bsp143I GATC 6 cut(s) 229, 370, 525, 1069, 1074, 1117
Bsp1720I GCTNAGC 1 cut(s) 1061
BspANI GGCC 2 cut(s) 6, 1165
BspCNI CTCAG 5 cut(s) 523, 688, 951, 1074, 1267
BspLI GGNNCC 2 cut(s) 778, 956
BspOI GCTAGC 1 cut(s) 816
BspQI GCTCTTC 1 cut(s) 1286
BspTNI GGTCTC 1 cut(s) 413
BsrBI CCGCTC 1 cut(s) 789
BsrDI GCAATG 1 cut(s) 823
BsrI ACTGG 2 cut(s) 739, 851
BssECI CCNNGG 3 cut(s) 195, 611, 681
BssMI GATC 6 cut(s) 229, 370, 525, 1069, 1074, 1117
Bst2UI CCWGG 3 cut(s) 196, 612, 809
Bst4CI ACNGT 1 cut(s) 1326
Bst6I CTCTTC 4 cut(s) 403, 866, 968, 1286
BstC8I GCNNGC 1 cut(s) 814
BstDEI CTNAG 5 cut(s) 531, 696, 959, 1061, 1275
BstDSI CCRYGG 1 cut(s) 681
BstEII GGTNACC 1 cut(s) 278
BstF5I GGATG 4 cut(s) 213, 637, 1205, 1250
BstH2I RGCGCY 3 cut(s) 54, 139, 483
BstHHI GCGC 4 cut(s) 53, 138, 482, 911
BstKTI GATC 6 cut(s) 232, 373, 528, 1072, 1077, 1120
BstMAI GTCTC 2 cut(s) 321, 413
BstMBI GATC 6 cut(s) 229, 370, 525, 1069, 1074, 1117
BstMCI CGRYCG 1 cut(s) 528
BstMWI GCNNNNNNNGC 3 cut(s) 452, 479, 809
BstNI CCWGG 3 cut(s) 196, 612, 809
BstPI GGTNACC 1 cut(s) 278
BstSCI CCNGG 4 cut(s) 64, 194, 610, 807
BstSLI GKGCMC 1 cut(s) 858
BstV1I GCAGC 1 cut(s) 40
BstV2I GAAGAC 2 cut(s) 447, 948
BsuI GTATCC 1 cut(s) 671
BsuRI GGCC 2 cut(s) 6, 1165
BtgI CCRYGG 1 cut(s) 681
BtgZI GCGATG 2 cut(s) 564, 1080
BtrI CACGTC 1 cut(s) 1057
BtsCI GGATG 4 cut(s) 213, 637, 1205, 1250
BtsI GCAGTG 1 cut(s) 297
BtsIMutI CAGTG 4 cut(s) 297, 472, 732, 858
Cac8I GCNNGC 1 cut(s) 814
CfoI GCGC 4 cut(s) 53, 138, 482, 911
Cfr13I GGNCC 4 cut(s) 4, 704, 805, 954
CseI GACGC 4 cut(s) 45, 176, 452, 624
CviAII CATG 5 cut(s) 41, 247, 404, 1003, 1204
DdeI CTNAG 5 cut(s) 531, 696, 959, 1061, 1275
DpnI GATC 6 cut(s) 231, 372, 527, 1071, 1076, 1119
DpnII GATC 6 cut(s) 229, 370, 525, 1069, 1074, 1117
DraI TTTAAA 1 cut(s) 795
DraIII CACNNNGTG 2 cut(s) 682, 1157
DriI GACNNNNNGTC 1 cut(s) 448
Eam1104I CTCTTC 4 cut(s) 403, 866, 968, 1286
Eam1105I GACNNNNNGTC 1 cut(s) 448
EarI CTCTTC 4 cut(s) 403, 866, 968, 1286
EciI GGCGGA 3 cut(s) 208, 313, 1005
Ecl136II GAGCTC 1 cut(s) 1279
Eco24I GRGCYC 1 cut(s) 1281
Eco31I GGTCTC 1 cut(s) 413
Eco47I GGWCC 3 cut(s) 704, 805, 954
Eco47III AGCGCT 1 cut(s) 137
Eco53kI GAGCTC 1 cut(s) 1279
Eco91I GGTNACC 1 cut(s) 278
EcoICRI GAGCTC 1 cut(s) 1279
EcoO109I RGGNCCY 1 cut(s) 954
EcoO65I GGTNACC 1 cut(s) 278
EcoRI GAATTC 1 cut(s) 602
EcoRII CCWGG 3 cut(s) 194, 610, 807
EcoT22I ATGCAT 1 cut(s) 1205
EcoT38I GRGCYC 1 cut(s) 1281
Esp3I CGTCTC 1 cut(s) 321
FaeI CATG 5 cut(s) 44, 250, 407, 1006, 1207
FaqI GGGAC 1 cut(s) 1138
FatI CATG 5 cut(s) 40, 246, 403, 1002, 1203
FauI CCCGC 1 cut(s) 718
FbaI TGATCA 2 cut(s) 1069, 1117
FblI GTMKAC 1 cut(s) 1107
Fnu4HI GCNGC 4 cut(s) 18, 54, 163, 668
FokI GGATG 4 cut(s) 220, 644, 1212, 1257
FriOI GRGCYC 1 cut(s) 1281
Fsp4HI GCNGC 4 cut(s) 18, 54, 163, 668
FspBI CTAG 2 cut(s) 813, 1154
GlaI GCGC 4 cut(s) 52, 137, 481, 910
GluI GCNGC 4 cut(s) 18, 54, 163, 668
HaeII RGCGCY 3 cut(s) 54, 139, 483
HaeIII GGCC 2 cut(s) 6, 1165
HapII CCGG 6 cut(s) 65, 240, 276, 327, 664, 707
HgaI GACGC 4 cut(s) 45, 176, 452, 624
HhaI GCGC 4 cut(s) 53, 138, 482, 911
Hin1II CATG 5 cut(s) 44, 250, 407, 1006, 1207
Hin6I GCGC 4 cut(s) 51, 136, 480, 909
HinP1I GCGC 4 cut(s) 51, 136, 480, 909
HpaII CCGG 6 cut(s) 65, 240, 276, 327, 664, 707
HphI GGTGA 4 cut(s) 262, 290, 734, 1169
Hpy166II GTNNAC 5 cut(s) 253, 732, 759, 856, 1108
Hpy188III TCNNGA 5 cut(s) 695, 952, 1039, 1189, 1313
Hpy8I GTNNAC 5 cut(s) 253, 732, 759, 856, 1108
HpyAV CCTTC 6 cut(s) 400, 498, 899, 1017, 1214, 1219
HpyCH4III ACNGT 1 cut(s) 1326
HpyCH4IV ACGT 6 cut(s) 177, 690, 771, 887, 1056, 1127
HpyCH4V TGCA 2 cut(s) 856, 1203
HpyF10VI GCNNNNNNNGC 3 cut(s) 452, 479, 809
HpyF3I CTNAG 5 cut(s) 531, 696, 959, 1061, 1275
HpySE526I ACGT 6 cut(s) 177, 690, 771, 887, 1056, 1127
Hsp92II CATG 5 cut(s) 44, 250, 407, 1006, 1207
HspAI GCGC 4 cut(s) 51, 136, 480, 909
Ksp22I TGATCA 2 cut(s) 1069, 1117
Kzo9I GATC 6 cut(s) 229, 370, 525, 1069, 1074, 1117
LguI GCTCTTC 1 cut(s) 1286
LmnI GCTCC 2 cut(s) 307, 978
Lsp1109I GCAGC 1 cut(s) 40
LweI GCATC 2 cut(s) 622, 1190
MaeI CTAG 2 cut(s) 813, 1154
MaeII ACGT 6 cut(s) 177, 690, 771, 887, 1056, 1127
MaeIII GTNAC 4 cut(s) 278, 520, 572, 1157
MalI GATC 6 cut(s) 231, 372, 527, 1071, 1076, 1119
MbiI CCGCTC 1 cut(s) 789
MboI GATC 6 cut(s) 229, 370, 525, 1069, 1074, 1117
MhlI GDGCHC 3 cut(s) 858, 1062, 1281
MluCI AATT 6 cut(s) 122, 602, 746, 796, 1091, 1267
MlyI GAGTC 3 cut(s) 458, 883, 1303
MmeI TCCRAC 2 cut(s) 61, 754
Mph1103I ATGCAT 1 cut(s) 1205
MroXI GAANNNNTTC 1 cut(s) 828
MseI TTAA 6 cut(s) 132, 336, 537, 713, 794, 843
MspA1I CMGCKG 1 cut(s) 803
MspI CCGG 6 cut(s) 65, 240, 276, 327, 664, 707
MspR9I CCNGG 4 cut(s) 66, 196, 612, 809
MvaI CCWGG 3 cut(s) 196, 612, 809
MwoI GCNNNNNNNGC 3 cut(s) 452, 479, 809
NciI CCSGG 1 cut(s) 66
NdeII GATC 6 cut(s) 229, 370, 525, 1069, 1074, 1117
NheI GCTAGC 1 cut(s) 812
NlaIII CATG 5 cut(s) 44, 250, 407, 1006, 1207
NlaIV GGNNCC 2 cut(s) 778, 956
NmeAIII GCCGAG 1 cut(s) 808
NmuCI GTSAC 2 cut(s) 278, 1157
NsiI ATGCAT 1 cut(s) 1205
PciSI GCTCTTC 1 cut(s) 1286
PcsI WCGNNNNNNNCGW 2 cut(s) 174, 1062
PdmI GAANNNNTTC 1 cut(s) 828
PfeI GAWTC 9 cut(s) 31, 69, 106, 213, 288, 880, 993, 1033, 1099
PflMI CCANNNNNTGG 1 cut(s) 682
PkrI GCNGC 4 cut(s) 19, 55, 164, 669
Ple19I CGATCG 1 cut(s) 528
PleI GAGTC 3 cut(s) 457, 882, 1303
PpsI GAGTC 3 cut(s) 457, 882, 1303
PpuMI RGGWCCY 1 cut(s) 954
Psp124BI GAGCTC 1 cut(s) 1281
Psp1406I AACGTT 1 cut(s) 690
Psp5II RGGWCCY 1 cut(s) 954
Psp6I CCWGG 3 cut(s) 194, 610, 807
PspEI GGTNACC 1 cut(s) 278
PspGI CCWGG 3 cut(s) 194, 610, 807
PspN4I GGNNCC 2 cut(s) 778, 956
PspPI GGNCC 4 cut(s) 4, 704, 805, 954
PspPPI RGGWCCY 1 cut(s) 954
PvuI CGATCG 1 cut(s) 528
SacI GAGCTC 1 cut(s) 1281
SapI GCTCTTC 1 cut(s) 1286
SaqAI TTAA 6 cut(s) 132, 336, 537, 713, 794, 843
SatI GCNGC 4 cut(s) 18, 54, 163, 668
Sau3AI GATC 6 cut(s) 229, 370, 525, 1069, 1074, 1117
Sau96I GGNCC 4 cut(s) 4, 704, 805, 954
SchI GAGTC 3 cut(s) 458, 883, 1303
ScrFI CCNGG 4 cut(s) 66, 196, 612, 809
SduI GDGCHC 3 cut(s) 858, 1062, 1281
SfaNI GCATC 2 cut(s) 622, 1190
SinI GGWCC 3 cut(s) 704, 805, 954
SmlI CTYRAG 1 cut(s) 1037
SmoI CTYRAG 1 cut(s) 1037
Sse9I AATT 6 cut(s) 122, 602, 746, 796, 1091, 1267
SspMI CTAG 2 cut(s) 813, 1154
SstI GAGCTC 1 cut(s) 1281
StyD4I CCNGG 4 cut(s) 64, 194, 610, 807
TaaI ACNGT 1 cut(s) 1326
TaiI ACGT 6 cut(s) 180, 693, 774, 890, 1059, 1130
TaqI TCGA 4 cut(s) 150, 369, 618, 996
TasI AATT 6 cut(s) 122, 602, 746, 796, 1091, 1267
TauI GCSGC 3 cut(s) 20, 165, 670
TfiI GAWTC 9 cut(s) 31, 69, 106, 213, 288, 880, 993, 1033, 1099
Tru1I TTAA 6 cut(s) 132, 336, 537, 713, 794, 843
Tru9I TTAA 6 cut(s) 132, 336, 537, 713, 794, 843
TscAI CASTG 4 cut(s) 304, 472, 739, 858
TseFI GTSAC 2 cut(s) 278, 1157
TseI GCWGC 1 cut(s) 53
Tsp45I GTSAC 2 cut(s) 278, 1157
TspDTI ATGAA 4 cut(s) 528, 837, 991, 1223
TspGWI ACGGA 2 cut(s) 303, 873
TspRI CASTG 4 cut(s) 304, 472, 739, 858
Van91I CCANNNNNTGG 1 cut(s) 682
VneI GTGCAC 1 cut(s) 854
VpaK11BI GGWCC 3 cut(s) 704, 805, 954
XapI RAATTY 3 cut(s) 122, 602, 796
XcmI CCANNNNNNNNNTGG 2 cut(s) 244, 1327
XmiI GTMKAC 1 cut(s) 1107
XmnI GAANNNNTTC 1 cut(s) 828
XspI CTAG 2 cut(s) 813, 1154
Zsp2I ATGCAT 1 cut(s) 1205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.