AT1G06930

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
2128843 .. 2129883
1041 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G06930.1

Sequence Viewer

Length: 510 bp
ATGCCTCAGCTGGATCGTTCTAGGGTTTCCACGACCAAACTGATCCTCTCTGTGGCCGTCGAGGGCGACTACTACGGTGGATCATCAGCCGCCGTTCCCTTCAAATGGGAATCTCAGCCCGGAACTCCAAGACGACTCTCCAAACGATCCTCCTCTTCCGGTTTCAATTCTGATTCTGATTTCAATTTTCCGGTTTCAGCACCACTAACACCTCCTCCTTCTTACTTCTACGCTTCTCCATCCTCTACAAAACACGTAAGCCCTAAAAAAACCAACACTCTCTTTAGTTCCTTGCTTTCCAAGAATCGTAGTGTGCCATCTTCTCCGGCTTCTTCTTCTTCGTCGTCCTCGTCTTCAGTTCCATCTTCTCCATTGAGGACATCTGATTTAAGCAACAGAAGAAGATCAATGTGGTTTGAATCTGGTTCGAGTTTAGACTACGGATCGAATAGTGCTAAATCTTCTGGATGTTACGCTTCCCTTGTCAAGGTGTTGCTCAGATCATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

169

Amino Acids

18.05

Weight (kDa)

10.06

Isoelectric Point (pI)

96.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017491)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06930 AT3G56260 AT3G56260
prunus_persica Prupe.6G043800_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0072421
rosa_roxburghii Rroxscaffold_1G00008790
rosa_rugosa Rorug05G0418000
rosa_samantha Rh5AG474500 Rh5BG494500 Rh5CG518600 Rh5DG506700
rosa_wichuraiana Rw5G044060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 90
AclWI GGATC 5 cut(s) 21, 37, 88, 141, 451
AcoI YGGCCR 1 cut(s) 54
AcuI CTGAAG 1 cut(s) 339
AfiI CCNNNNNNNGG 3 cut(s) 52, 105, 487
AflIII ACRYGT 1 cut(s) 253
AgsI TTSAA 4 cut(s) 103, 166, 184, 419
AluBI AGCT 1 cut(s) 10
AluI AGCT 1 cut(s) 10
AlwI GGATC 5 cut(s) 21, 37, 88, 141, 451
AoxI GGCC 1 cut(s) 54
AsuC2I CCSGG 1 cut(s) 120
BbsI GAAGAC 1 cut(s) 345
BbvCI CCTCAGC 1 cut(s) 6
BccI CCATC 3 cut(s) 247, 325, 370
BceAI ACGGC 2 cut(s) 41, 77
BcnI CCSGG 1 cut(s) 120
BfaI CTAG 1 cut(s) 21
BisI GCNGC 1 cut(s) 90
BlsI GCNGC 1 cut(s) 91
Bme1390I CCNGG 1 cut(s) 120
BmrFI CCNGG 1 cut(s) 120
BpiI GAAGAC 1 cut(s) 345
Bpu10I CCTNAGC 1 cut(s) 6
BpuMI CCSGG 1 cut(s) 120
BsaAI YACGTR 1 cut(s) 256
BsaWI WCCGGW 2 cut(s) 158, 190
BsaXI ACNNNNNCTCC 2 cut(s) 199, 229
Bsc4I CCNNNNNNNGG 3 cut(s) 52, 105, 487
BseGI GGATG 2 cut(s) 239, 473
BseLI CCNNNNNNNGG 3 cut(s) 52, 105, 487
BseMII CTCAG 2 cut(s) 20, 128
BseRI GAGGAG 2 cut(s) 142, 204
BshFI GGCC 1 cut(s) 56
BsiSI CCGG 4 cut(s) 120, 159, 191, 326
BslI CCNNNNNNNGG 3 cut(s) 52, 105, 487
BsnI GGCC 1 cut(s) 56
Bsp143I GATC 7 cut(s) 13, 42, 80, 146, 404, 443, 500
BspACI CCGC 1 cut(s) 90
BspANI GGCC 1 cut(s) 56
BspCNI CTCAG 3 cut(s) 19, 127, 510
BspPI GGATC 5 cut(s) 21, 37, 88, 141, 451
BssMI GATC 7 cut(s) 13, 42, 80, 146, 404, 443, 500
Bst4CI ACNGT 1 cut(s) 77
Bst6I CTCTTC 1 cut(s) 160
BstBAI YACGTR 1 cut(s) 256
BstDEI CTNAG 3 cut(s) 6, 114, 497
BstENI CCTNNNNNAGG 1 cut(s) 485
BstF5I GGATG 2 cut(s) 239, 473
BstKTI GATC 7 cut(s) 16, 45, 83, 149, 407, 446, 503
BstMBI GATC 7 cut(s) 13, 42, 80, 146, 404, 443, 500
BstSCI CCNGG 1 cut(s) 118
BstV2I GAAGAC 1 cut(s) 345
BsuRI GGCC 1 cut(s) 56
BtsCI GGATG 2 cut(s) 239, 473
CviAII CATG 1 cut(s) 504
CviJI RGCY 6 cut(s) 10, 56, 89, 118, 261, 329
CviKI_1 RGCY 6 cut(s) 10, 56, 89, 118, 261, 329
DdeI CTNAG 3 cut(s) 6, 114, 497
DpnI GATC 7 cut(s) 15, 44, 82, 148, 406, 445, 502
DpnII GATC 7 cut(s) 13, 42, 80, 146, 404, 443, 500
EaeI YGGCCR 1 cut(s) 54
Eam1104I CTCTTC 1 cut(s) 160
EarI CTCTTC 1 cut(s) 160
Eco57I CTGAAG 1 cut(s) 339
EcoNI CCTNNNNNAGG 1 cut(s) 485
FaeI CATG 1 cut(s) 507
FaiI YATR 1 cut(s) 505
FatI CATG 1 cut(s) 503
Fnu4HI GCNGC 1 cut(s) 90
FokI GGATG 2 cut(s) 226, 480
Fsp4HI GCNGC 1 cut(s) 90
FspBI CTAG 1 cut(s) 21
GluI GCNGC 1 cut(s) 90
HaeIII GGCC 1 cut(s) 56
HapII CCGG 4 cut(s) 120, 159, 191, 326
Hin1II CATG 1 cut(s) 507
HinfI GANTC 5 cut(s) 110, 135, 173, 304, 419
HpaII CCGG 4 cut(s) 120, 159, 191, 326
Hpy188I TCNGA 4 cut(s) 172, 178, 385, 500
Hpy188III TCNNGA 1 cut(s) 465
Hpy99I CGWCG 2 cut(s) 62, 346
HpyAV CCTTC 2 cut(s) 109, 228
HpyCH4III ACNGT 1 cut(s) 77
HpyCH4IV ACGT 1 cut(s) 255
HpyF3I CTNAG 3 cut(s) 6, 114, 497
HpySE526I ACGT 1 cut(s) 255
Hsp92II CATG 1 cut(s) 507
Kzo9I GATC 7 cut(s) 13, 42, 80, 146, 404, 443, 500
LpnPI CCDG 6 cut(s) 133, 172, 204, 339, 408, 450
MaeI CTAG 1 cut(s) 21
MaeII ACGT 1 cut(s) 255
MaeIII GTNAC 1 cut(s) 470
MalI GATC 7 cut(s) 15, 44, 82, 148, 406, 445, 502
MboI GATC 7 cut(s) 13, 42, 80, 146, 404, 443, 500
MluCI AATT 2 cut(s) 166, 184
MlyI GAGTC 1 cut(s) 129
MseI TTAA 2 cut(s) 389, 508
MspA1I CMGCKG 1 cut(s) 10
MspI CCGG 4 cut(s) 120, 159, 191, 326
MspR9I CCNGG 1 cut(s) 120
NciI CCSGG 1 cut(s) 120
NdeII GATC 7 cut(s) 13, 42, 80, 146, 404, 443, 500
NlaIII CATG 1 cut(s) 507
PcsI WCGNNNNNNNCGW 1 cut(s) 347
PfeI GAWTC 4 cut(s) 110, 173, 304, 419
PkrI GCNGC 1 cut(s) 91
PleI GAGTC 1 cut(s) 129
PpsI GAGTC 1 cut(s) 129
Ppu21I YACGTR 1 cut(s) 256
PvuII CAGCTG 1 cut(s) 10
SaqAI TTAA 2 cut(s) 389, 508
SatI GCNGC 1 cut(s) 90
Sau3AI GATC 7 cut(s) 13, 42, 80, 146, 404, 443, 500
SchI GAGTC 1 cut(s) 129
ScrFI CCNGG 1 cut(s) 120
SetI ASST 4 cut(s) 12, 214, 258, 492
Sse9I AATT 2 cut(s) 166, 184
SsiI CCGC 1 cut(s) 90
SspMI CTAG 1 cut(s) 21
StyD4I CCNGG 1 cut(s) 118
TaaI ACNGT 1 cut(s) 77
TaiI ACGT 1 cut(s) 258
TaqI TCGA 3 cut(s) 60, 428, 446
TasI AATT 2 cut(s) 166, 184
TauI GCSGC 1 cut(s) 92
TfiI GAWTC 4 cut(s) 110, 173, 304, 419
Tru1I TTAA 2 cut(s) 389, 508
Tru9I TTAA 2 cut(s) 389, 508
TspGWI ACGGA 1 cut(s) 456
XagI CCTNNNNNAGG 1 cut(s) 485
XspI CTAG 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.