Prupe.6G043800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0017491
Physical Location & Seq
Forward (+)
3189549 .. 3190259
711 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G043800.1

Sequence Viewer

Length: 528 bp
ATGGCTAGCTTCTCATCCACACTTGAAGATCACTACCATGGAGGAGCCTCTGCTTCTGTTTCAATTCCATTCGATTGGGAATCTCAACCAGGCACACCAAAATCCAAGTACCTCCAAAACCCTACTCTCCCTCCTCTCACACCTCCACCTTCCTACTTTTACACAAAGACCAAAACACCCTTGAGGAAAAAGCACTCCAACTCTCTTCTTTTTCACAATATTTTCCCCAAGATGCGTAGTAGTACTAGTACTTCAAGAAAAACATCATCCCCAGCCTCTTATTCACCATCTCTTTCTTCTTCTTCGTCTTCGTCAGCATCCTCAACAACATATTATTCAGTCCCATCTTCCCCTATAACACCTTCGAAATTCCGGGAACGGGGTAGGTCGATGTCAAGCCCAAAGGTGCTGGTTGATTCAAGGAACATCCATTGCCATGATCGGTACGAAGACTATGGCTCAAGAGTTTCAACTAGAACAGGTTGCTATTTAAACTTCATTAAGGTGTTCCTTAGGGAATTTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF688

Protein Analysis

176

Amino Acids

19.56

Weight (kDa)

9.89

Isoelectric Point (pI)

78.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017491)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06930 AT3G56260 AT3G56260
prunus_persica Prupe.6G043800_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0072421
rosa_roxburghii Rroxscaffold_1G00008790
rosa_rugosa Rorug05G0418000
rosa_samantha Rh5AG474500 Rh5BG494500 Rh5CG518600 Rh5DG506700
rosa_wichuraiana Rw5G044060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 368, 518
AfaI GTAC 4 cut(s) 110, 244, 250, 446
AfiI CCNNNNNNNGG 1 cut(s) 379
AgsI TTSAA 5 cut(s) 26, 63, 255, 420, 471
AhlI ACTAGT 1 cut(s) 245
AjnI CCWGG 1 cut(s) 88
AluBI AGCT 1 cut(s) 9
AluI AGCT 1 cut(s) 9
ApoI RAATTY 2 cut(s) 368, 518
AsuC2I CCSGG 1 cut(s) 374
AsuHPI GGTGA 1 cut(s) 276
AsuII TTCGAA 1 cut(s) 365
AsuNHI GCTAGC 1 cut(s) 5
AxyI CCTNAGG 1 cut(s) 512
BarI GAAGNNNNNNTAC 2 cut(s) 235, 267
BbsI GAAGAC 2 cut(s) 300, 456
BccI CCATC 2 cut(s) 295, 352
BciT130I CCWGG 1 cut(s) 90
BcnI CCSGG 1 cut(s) 374
BcuI ACTAGT 1 cut(s) 245
BfaI CTAG 3 cut(s) 6, 246, 474
BmcAI AGTACT 2 cut(s) 244, 250
Bme1390I CCNGG 2 cut(s) 90, 374
BmiI GGNNCC 1 cut(s) 46
BmrFI CCNGG 2 cut(s) 90, 374
BmsI GCATC 2 cut(s) 222, 326
BmtI GCTAGC 1 cut(s) 9
BpiI GAAGAC 2 cut(s) 300, 456
Bpu14I TTCGAA 1 cut(s) 365
BpuEI CTTGAG 2 cut(s) 202, 445
BpuMI CCSGG 1 cut(s) 374
BsaJI CCNNGG 1 cut(s) 37
BsaXI ACNNNNNCTCC 2 cut(s) 115, 145
Bsc4I CCNNNNNNNGG 1 cut(s) 379
Bse21I CCTNAGG 1 cut(s) 512
Bse3DI GCAATG 1 cut(s) 430
BseBI CCWGG 1 cut(s) 90
BseDI CCNNGG 1 cut(s) 37
BseGI GGATG 4 cut(s) 14, 266, 317, 426
BseLI CCNNNNNNNGG 1 cut(s) 379
BseMI GCAATG 1 cut(s) 430
BseRI GAGGAG 2 cut(s) 57, 123
BseYI CCCAGC 1 cut(s) 271
BsiSI CCGG 1 cut(s) 373
BslFI GGGAC 1 cut(s) 326
BslI CCNNNNNNNGG 1 cut(s) 379
BsmFI GGGAC 1 cut(s) 326
Bsp119I TTCGAA 1 cut(s) 365
Bsp143I GATC 2 cut(s) 28, 439
Bsp19I CCATGG 1 cut(s) 37
BspLI GGNNCC 1 cut(s) 46
BspOI GCTAGC 1 cut(s) 9
BspT104I TTCGAA 1 cut(s) 365
BsrDI GCAATG 1 cut(s) 430
BssECI CCNNGG 1 cut(s) 37
BssMI GATC 2 cut(s) 28, 439
BssT1I CCWWGG 1 cut(s) 37
Bst2UI CCWGG 1 cut(s) 90
Bst6I CTCTTC 1 cut(s) 210
BstBI TTCGAA 1 cut(s) 365
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 1 cut(s) 512
BstDSI CCRYGG 1 cut(s) 37
BstF5I GGATG 4 cut(s) 14, 266, 317, 426
BstKTI GATC 2 cut(s) 31, 442
BstMBI GATC 2 cut(s) 28, 439
BstNI CCWGG 1 cut(s) 90
BstSCI CCNGG 2 cut(s) 88, 372
BstV2I GAAGAC 2 cut(s) 300, 456
BstXI CCANNNNNNTGG 1 cut(s) 75
Bsu36I CCTNAGG 1 cut(s) 512
BtgI CCRYGG 1 cut(s) 37
BtsCI GGATG 4 cut(s) 14, 266, 317, 426
Cac8I GCNNGC 1 cut(s) 7
Csp6I GTAC 4 cut(s) 109, 243, 249, 445
CviAII CATG 2 cut(s) 38, 437
CviJI RGCY 6 cut(s) 5, 9, 47, 275, 399, 459
CviKI_1 RGCY 6 cut(s) 5, 9, 47, 275, 399, 459
CviQI GTAC 4 cut(s) 109, 243, 249, 445
DdeI CTNAG 1 cut(s) 512
DpnI GATC 2 cut(s) 30, 441
DpnII GATC 2 cut(s) 28, 439
DraI TTTAAA 1 cut(s) 492
Eam1104I CTCTTC 1 cut(s) 210
EarI CTCTTC 1 cut(s) 210
Eco130I CCWWGG 1 cut(s) 37
Eco81I CCTNAGG 1 cut(s) 512
EcoRII CCWGG 1 cut(s) 88
EcoT14I CCWWGG 1 cut(s) 37
ErhI CCWWGG 1 cut(s) 37
FaeI CATG 2 cut(s) 41, 440
FaiI YATR 5 cut(s) 39, 331, 356, 438, 456
FaqI GGGAC 1 cut(s) 326
FatI CATG 2 cut(s) 37, 436
FokI GGATG 3 cut(s) 253, 304, 413
FspBI CTAG 3 cut(s) 6, 246, 474
GsaI CCCAGC 1 cut(s) 275
HapII CCGG 1 cut(s) 373
Hin1II CATG 2 cut(s) 41, 440
HinfI GANTC 2 cut(s) 80, 416
HpaII CCGG 1 cut(s) 373
HphI GGTGA 1 cut(s) 276
Hpy188III TCNNGA 2 cut(s) 255, 462
HpyAV CCTTC 2 cut(s) 159, 372
HpyF3I CTNAG 1 cut(s) 512
Hsp92II CATG 2 cut(s) 41, 440
Kzo9I GATC 2 cut(s) 28, 439
LmnI GCTCC 1 cut(s) 44
LpnPI CCDG 6 cut(s) 75, 102, 285, 386, 395, 465
LweI GCATC 2 cut(s) 222, 326
MaeI CTAG 3 cut(s) 6, 246, 474
MalI GATC 2 cut(s) 30, 441
MboI GATC 2 cut(s) 28, 439
MboII GAAGA 8 cut(s) 38, 197, 288, 291, 294, 300, 339, 461
MluCI AATT 3 cut(s) 63, 368, 518
MmeI TCCRAC 1 cut(s) 222
MnlI CCTC 9 cut(s) 35, 58, 122, 141, 144, 153, 177, 286, 331
MseI TTAA 3 cut(s) 491, 501, 526
MslI CAYNNNNRTG 3 cut(s) 36, 435, 503
MspI CCGG 1 cut(s) 373
MspR9I CCNGG 2 cut(s) 90, 374
MvaI CCWGG 1 cut(s) 90
NciI CCSGG 1 cut(s) 374
NcoI CCATGG 1 cut(s) 37
NdeII GATC 2 cut(s) 28, 439
NheI GCTAGC 1 cut(s) 5
NlaIII CATG 2 cut(s) 41, 440
NlaIV GGNNCC 1 cut(s) 46
NspV TTCGAA 1 cut(s) 365
PfeI GAWTC 2 cut(s) 80, 416
PfoI TCCNGGA 1 cut(s) 372
Psp6I CCWGG 1 cut(s) 88
PspFI CCCAGC 1 cut(s) 271
PspGI CCWGG 1 cut(s) 88
PspN4I GGNNCC 1 cut(s) 46
RsaI GTAC 4 cut(s) 110, 244, 250, 446
RsaNI GTAC 4 cut(s) 109, 243, 249, 445
RseI CAYNNNNRTG 3 cut(s) 36, 435, 503
SaqAI TTAA 3 cut(s) 491, 501, 526
Sau3AI GATC 2 cut(s) 28, 439
ScaI AGTACT 2 cut(s) 244, 250
ScrFI CCNGG 2 cut(s) 90, 374
SetI ASST 9 cut(s) 11, 114, 145, 151, 364, 389, 408, 484, 507
SfaNI GCATC 2 cut(s) 222, 326
SfuI TTCGAA 1 cut(s) 365
SmiMI CAYNNNNRTG 3 cut(s) 36, 435, 503
SmlI CTYRAG 2 cut(s) 181, 460
SmoI CTYRAG 2 cut(s) 181, 460
SpeI ACTAGT 1 cut(s) 245
Sse9I AATT 3 cut(s) 63, 368, 518
SspI AATATT 1 cut(s) 220
SspMI CTAG 3 cut(s) 6, 246, 474
StyD4I CCNGG 2 cut(s) 88, 372
StyI CCWWGG 1 cut(s) 37
TaqI TCGA 3 cut(s) 72, 365, 389
TasI AATT 3 cut(s) 63, 368, 518
TatI WGTACW 2 cut(s) 242, 248
TfiI GAWTC 2 cut(s) 80, 416
Tru1I TTAA 3 cut(s) 491, 501, 526
Tru9I TTAA 3 cut(s) 491, 501, 526
TspDTI ATGAA 2 cut(s) 487, 512
XapI RAATTY 2 cut(s) 368, 518
XspI CTAG 3 cut(s) 6, 246, 474
ZrmI AGTACT 2 cut(s) 244, 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.