RchiOBHm_Chr5g0072421

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0017491
Physical Location & Seq
Reverse (-)
78390561 .. 78391103
543 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34738

Sequence Viewer

Length: 543 bp
ATGGCTAACTTGTCATCATCACTTGAAGACTACCATGGAAGAGCCTCTGCATTGGTTTCAGTTCCATTCAATTGGGAGTCTCAACCAGGTACTCCAAAATCCAAGTACCACCAAAGCCTTACTCTACCTCCTCTCACACCCCCACCTTCTTACTTTTACAACACAAATTCCACAAAAAGGCCTAAAACGAAAACCAAGCACTCAAAATCTCCTCTTTTACACAACATTTTCCCTAAGCTACGATCAAGAAAATCATCAACCCCATCATCACCGGCCTCTTCTTCTTCTCCATCAAATTCAAGGTCATCGTCGACATCGTCAGCATCTTCAATAACTTACTATTCGGTGCCGTCTTCTCCTGTGAGTACACCGCCGAGAAATCACTGTGCACGAGATCGAACATTGCCAAGCCCAAGGGTGCAACTGGAAATTGATTCAGGGATGCTGTGTCCACATGAGTATGGCTATGGCTCAAGCGTTTCAACTACTTCAGGTTGTTATTCATACTTAATCAAGGTACTGCTGAGGCAATATCAGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF688

Protein Analysis

180

Amino Acids

19.75

Weight (kDa)

9.9

Isoelectric Point (pI)

79.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017491)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06930 AT3G56260 AT3G56260
prunus_persica Prupe.6G043800_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0072421
rosa_roxburghii Rroxscaffold_1G00008790
rosa_rugosa Rorug05G0418000
rosa_samantha Rh5AG474500 Rh5BG494500 Rh5CG518600 Rh5DG506700
rosa_wichuraiana Rw5G044060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 346
AccI GTMKAC 1 cut(s) 311
AciI CCGC 1 cut(s) 371
AcsI RAATTY 2 cut(s) 166, 295
AcuI CTGAAG 1 cut(s) 474
AfaI GTAC 4 cut(s) 91, 107, 367, 519
AfiI CCNNNNNNNGG 1 cut(s) 177
AgsI TTSAA 5 cut(s) 26, 70, 300, 330, 483
AjnI CCWGG 1 cut(s) 85
AluBI AGCT 1 cut(s) 238
AluI AGCT 1 cut(s) 238
Alw21I GWGCWC 1 cut(s) 391
Alw26I GTCTC 1 cut(s) 84
Alw44I GTGCAC 1 cut(s) 387
AoxI GGCC 2 cut(s) 179, 273
ApaLI GTGCAC 1 cut(s) 387
ApoI RAATTY 2 cut(s) 166, 295
ArsI GACNNNNNNTTYG 2 cut(s) 287, 319
AsuHPI GGTGA 1 cut(s) 261
BaeGI GKGCMC 1 cut(s) 391
BanI GGYRCC 1 cut(s) 346
BauI CACGAG 1 cut(s) 390
BbsI GAAGAC 2 cut(s) 33, 345
Bbv12I GWGCWC 1 cut(s) 391
BbvCI CCTCAGC 1 cut(s) 524
BccI CCATC 2 cut(s) 271, 298
BceAI ACGGC 1 cut(s) 334
BciT130I CCWGG 1 cut(s) 87
BcoDI GTCTC 1 cut(s) 84
Bme1390I CCNGG 1 cut(s) 87
BmiI GGNNCC 1 cut(s) 348
BmrFI CCNGG 1 cut(s) 87
BmsI GCATC 2 cut(s) 332, 432
BpiI GAAGAC 2 cut(s) 33, 345
Bpu10I CCTNAGC 2 cut(s) 234, 524
BpuEI CTTGAG 1 cut(s) 457
BsaJI CCNNGG 2 cut(s) 34, 413
BsaXI ACNNNNNCTCC 2 cut(s) 112, 142
Bsc4I CCNNNNNNNGG 1 cut(s) 177
Bse118I RCCGGY 1 cut(s) 271
Bse1I ACTGG 1 cut(s) 429
Bse3DI GCAATG 1 cut(s) 401
BseBI CCWGG 1 cut(s) 87
BseDI CCNNGG 2 cut(s) 34, 413
BseGI GGATG 1 cut(s) 447
BseLI CCNNNNNNNGG 1 cut(s) 177
BseMI GCAATG 1 cut(s) 401
BseMII CTCAG 1 cut(s) 515
BseNI ACTGG 1 cut(s) 429
BseRI GAGGAG 2 cut(s) 120, 201
BseSI GKGCMC 1 cut(s) 391
BshFI GGCC 2 cut(s) 181, 275
BshNI GGYRCC 1 cut(s) 346
BsiHKAI GWGCWC 1 cut(s) 391
BsiSI CCGG 1 cut(s) 272
BslI CCNNNNNNNGG 1 cut(s) 177
BsmAI GTCTC 1 cut(s) 84
BsnI GGCC 2 cut(s) 181, 275
Bsp1286I GDGCHC 1 cut(s) 391
Bsp143I GATC 2 cut(s) 242, 394
Bsp19I CCATGG 1 cut(s) 34
BspACI CCGC 1 cut(s) 371
BspANI GGCC 2 cut(s) 181, 275
BspCNI CTCAG 1 cut(s) 516
BspLI GGNNCC 1 cut(s) 348
BspQI GCTCTTC 1 cut(s) 34
BspT107I GGYRCC 1 cut(s) 346
BsrDI GCAATG 1 cut(s) 401
BsrFI RCCGGY 1 cut(s) 271
BsrI ACTGG 1 cut(s) 429
BssAI RCCGGY 1 cut(s) 271
BssECI CCNNGG 2 cut(s) 34, 413
BssMI GATC 2 cut(s) 242, 394
BssSI CACGAG 1 cut(s) 390
BssT1I CCWWGG 2 cut(s) 34, 413
Bst2BI CACGAG 1 cut(s) 390
Bst2UI CCWGG 1 cut(s) 87
Bst4CI ACNGT 1 cut(s) 386
Bst6I CTCTTC 2 cut(s) 34, 283
BstDEI CTNAG 2 cut(s) 234, 524
BstDSI CCRYGG 1 cut(s) 34
BstF5I GGATG 1 cut(s) 447
BstKTI GATC 2 cut(s) 245, 397
BstMAI GTCTC 1 cut(s) 84
BstMBI GATC 2 cut(s) 242, 394
BstMWI GCNNNNNNNGC 1 cut(s) 535
BstNI CCWGG 1 cut(s) 87
BstSCI CCNGG 1 cut(s) 85
BstSLI GKGCMC 1 cut(s) 391
BstV2I GAAGAC 2 cut(s) 33, 345
BstXI CCANNNNNNTGG 1 cut(s) 72
BsuRI GGCC 2 cut(s) 181, 275
BtgI CCRYGG 1 cut(s) 34
BtsCI GGATG 1 cut(s) 447
BtsIMutI CAGTG 1 cut(s) 382
Cfr10I RCCGGY 1 cut(s) 271
CsiI ACCWGGT 1 cut(s) 85
Csp6I GTAC 4 cut(s) 90, 106, 366, 518
CviAII CATG 2 cut(s) 35, 455
CviJI RGCY 9 cut(s) 5, 44, 117, 181, 238, 275, 411, 465, 471
CviKI_1 RGCY 9 cut(s) 5, 44, 117, 181, 238, 275, 411, 465, 471
CviQI GTAC 4 cut(s) 90, 106, 366, 518
DdeI CTNAG 2 cut(s) 234, 524
DpnI GATC 2 cut(s) 244, 396
DpnII GATC 2 cut(s) 242, 394
Eam1104I CTCTTC 2 cut(s) 34, 283
EarI CTCTTC 2 cut(s) 34, 283
Eco130I CCWWGG 2 cut(s) 34, 413
Eco147I AGGCCT 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 474
EcoRII CCWGG 1 cut(s) 85
EcoT14I CCWWGG 2 cut(s) 34, 413
ErhI CCWWGG 2 cut(s) 34, 413
FaeI CATG 2 cut(s) 38, 458
FaiI YATR 5 cut(s) 36, 456, 462, 468, 505
FatI CATG 2 cut(s) 34, 454
FblI GTMKAC 1 cut(s) 311
FokI GGATG 1 cut(s) 454
HaeIII GGCC 2 cut(s) 181, 275
HapII CCGG 1 cut(s) 272
Hin1II CATG 2 cut(s) 38, 458
HincII GTYRAC 1 cut(s) 312
HindII GTYRAC 1 cut(s) 312
HinfI GANTC 2 cut(s) 77, 434
HpaII CCGG 1 cut(s) 272
HphI GGTGA 1 cut(s) 261
Hpy166II GTNNAC 4 cut(s) 312, 368, 389, 452
Hpy188III TCNNGA 1 cut(s) 246
Hpy8I GTNNAC 4 cut(s) 312, 368, 389, 452
Hpy99I CGWCG 1 cut(s) 313
HpyAV CCTTC 1 cut(s) 156
HpyCH4III ACNGT 1 cut(s) 386
HpyCH4V TGCA 3 cut(s) 50, 389, 421
HpyF10VI GCNNNNNNNGC 1 cut(s) 535
HpyF3I CTNAG 2 cut(s) 234, 524
Hsp92II CATG 2 cut(s) 38, 458
Kzo9I GATC 2 cut(s) 242, 394
LguI GCTCTTC 1 cut(s) 34
LpnPI CCDG 7 cut(s) 72, 99, 285, 372, 410, 423, 477
LweI GCATC 2 cut(s) 332, 432
MabI ACCWGGT 1 cut(s) 85
MalI GATC 2 cut(s) 244, 396
MboI GATC 2 cut(s) 242, 394
MboII GAAGA 7 cut(s) 38, 51, 270, 273, 276, 318, 345
MfeI CAATTG 1 cut(s) 70
MhlI GDGCHC 1 cut(s) 391
MluCI AATT 4 cut(s) 70, 166, 295, 429
MlyI GAGTC 1 cut(s) 86
MnlI CCTC 6 cut(s) 55, 138, 141, 222, 286, 519
MseI TTAA 1 cut(s) 509
MslI CAYNNNNRTG 1 cut(s) 459
MspI CCGG 1 cut(s) 272
MspR9I CCNGG 1 cut(s) 87
MunI CAATTG 1 cut(s) 70
MvaI CCWGG 1 cut(s) 87
MwoI GCNNNNNNNGC 1 cut(s) 535
NcoI CCATGG 1 cut(s) 34
NdeII GATC 2 cut(s) 242, 394
NlaIII CATG 2 cut(s) 38, 458
NlaIV GGNNCC 1 cut(s) 348
NmeAIII GCCGAG 1 cut(s) 399
PceI AGGCCT 1 cut(s) 181
PciSI GCTCTTC 1 cut(s) 34
PcsI WCGNNNNNNNCGW 1 cut(s) 314
PfeI GAWTC 1 cut(s) 434
PflFI GACNNNGTC 1 cut(s) 316
PleI GAGTC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 85
Psp6I CCWGG 1 cut(s) 85
PspGI CCWGG 1 cut(s) 85
PspN4I GGNNCC 1 cut(s) 348
PsyI GACNNNGTC 1 cut(s) 316
RsaI GTAC 4 cut(s) 91, 107, 367, 519
RsaNI GTAC 4 cut(s) 90, 106, 366, 518
RseI CAYNNNNRTG 1 cut(s) 459
SalI GTCGAC 1 cut(s) 310
SapI GCTCTTC 1 cut(s) 34
SaqAI TTAA 1 cut(s) 509
Sau3AI GATC 2 cut(s) 242, 394
SchI GAGTC 1 cut(s) 86
ScrFI CCNGG 1 cut(s) 87
SduI GDGCHC 1 cut(s) 391
SetI ASST 7 cut(s) 91, 130, 148, 240, 305, 496, 519
SexAI ACCWGGT 1 cut(s) 85
SfaNI GCATC 2 cut(s) 332, 432
SmiMI CAYNNNNRTG 1 cut(s) 459
SmlI CTYRAG 1 cut(s) 472
SmoI CTYRAG 1 cut(s) 472
Sse9I AATT 4 cut(s) 70, 166, 295, 429
SseBI AGGCCT 1 cut(s) 181
SsiI CCGC 1 cut(s) 371
StuI AGGCCT 1 cut(s) 181
StyD4I CCNGG 1 cut(s) 85
StyI CCWWGG 2 cut(s) 34, 413
TaaI ACNGT 1 cut(s) 386
TaqI TCGA 2 cut(s) 311, 397
TasI AATT 4 cut(s) 70, 166, 295, 429
TatI WGTACW 1 cut(s) 365
TfiI GAWTC 1 cut(s) 434
Tru1I TTAA 1 cut(s) 509
Tru9I TTAA 1 cut(s) 509
TscAI CASTG 1 cut(s) 389
TspDTI ATGAA 1 cut(s) 492
TspRI CASTG 1 cut(s) 389
Tth111I GACNNNGTC 1 cut(s) 316
VneI GTGCAC 1 cut(s) 387
XapI RAATTY 2 cut(s) 166, 295
XmiI GTMKAC 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.