Rroxscaffold_1G00008790

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0017491
Physical Location & Seq
Forward (+)
11047613 .. 11048152
540 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00008790.1

Sequence Viewer

Length: 540 bp
ATGGCTAACTTGTCATCATCACTTGAAGACTACCATGGAAGAGCCTCTGCATTGATTTCAGTTCCATTCAATTGGGAGTCTCAACCAGGTACCCCAAAATCCAAGTACCACCAAAGCCTTACTCTACCTCCTCTCACACCCCCACCTTCTTACTTTTACAACACAAATTCCACAAAAAGGCCTAAAACGAAAACCAAGTACTCAAAATCTCCTCTTTTACACAACATTTTCCCTAAGCTAGGATCAAGAAAATCATCAACCCCATCATCACCGGCCTCTTCTTCTCCACCAAATTCAAGGTCATCGTCGACATCGTCAGCATCTTCAATAACTTACTATTCGGTGCCTTCTTCTCCTGTGAGTACACCGGCGAGAAATCACTGTGCACGAGATCGAACATTGCCAAGCCCAAGGGTGCAACTGGAAATTGATTCAGGGATGCTGTGTCCACACGAGTATGGCTATGGCTCAAGTGTTTCAACTACTTCAGGTTGTTATTCATACTTAATCAAGGTACTGCTTAGGGAATATCAGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF688

Protein Analysis

179

Amino Acids

19.58

Weight (kDa)

9.71

Isoelectric Point (pI)

75.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017491)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06930 AT3G56260 AT3G56260
prunus_persica Prupe.6G043800_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0072421
rosa_roxburghii Rroxscaffold_1G00008790
rosa_rugosa Rorug05G0418000
rosa_samantha Rh5AG474500 Rh5BG494500 Rh5CG518600 Rh5DG506700
rosa_wichuraiana Rw5G044060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 89
AccB1I GGYRCC 2 cut(s) 89, 343
AccI GTMKAC 1 cut(s) 308
AclWI GGATC 1 cut(s) 250
AcsI RAATTY 2 cut(s) 166, 292
AcuI CTGAAG 1 cut(s) 471
AfaI GTAC 5 cut(s) 91, 107, 200, 364, 516
AfiI CCNNNNNNNGG 2 cut(s) 177, 239
AgsI TTSAA 5 cut(s) 26, 70, 297, 327, 480
AjnI CCWGG 1 cut(s) 85
AluBI AGCT 1 cut(s) 238
AluI AGCT 1 cut(s) 238
Alw21I GWGCWC 1 cut(s) 388
Alw26I GTCTC 1 cut(s) 84
Alw44I GTGCAC 1 cut(s) 384
AlwI GGATC 1 cut(s) 250
AoxI GGCC 2 cut(s) 179, 273
ApaLI GTGCAC 1 cut(s) 384
ApoI RAATTY 2 cut(s) 166, 292
ArsI GACNNNNNNTTYG 2 cut(s) 284, 316
Asp718I GGTACC 1 cut(s) 89
AsuHPI GGTGA 1 cut(s) 261
BaeGI GKGCMC 1 cut(s) 388
BanI GGYRCC 2 cut(s) 89, 343
BauI CACGAG 2 cut(s) 387, 452
BbsI GAAGAC 1 cut(s) 33
Bbv12I GWGCWC 1 cut(s) 388
BccI CCATC 1 cut(s) 271
BciT130I CCWGG 1 cut(s) 87
BcoDI GTCTC 1 cut(s) 84
BfaI CTAG 1 cut(s) 239
BmcAI AGTACT 1 cut(s) 200
Bme1390I CCNGG 1 cut(s) 87
BmiI GGNNCC 2 cut(s) 91, 345
BmrFI CCNGG 1 cut(s) 87
BmsI GCATC 2 cut(s) 329, 429
BpiI GAAGAC 1 cut(s) 33
Bpu10I CCTNAGC 2 cut(s) 234, 521
BpuEI CTTGAG 1 cut(s) 454
BsaJI CCNNGG 2 cut(s) 34, 410
BsaXI ACNNNNNCTCC 2 cut(s) 112, 142
Bsc4I CCNNNNNNNGG 2 cut(s) 177, 239
Bse118I RCCGGY 2 cut(s) 271, 367
Bse1I ACTGG 1 cut(s) 426
Bse3DI GCAATG 1 cut(s) 398
BseBI CCWGG 1 cut(s) 87
BseDI CCNNGG 2 cut(s) 34, 410
BseGI GGATG 1 cut(s) 444
BseLI CCNNNNNNNGG 2 cut(s) 177, 239
BseMI GCAATG 1 cut(s) 398
BseNI ACTGG 1 cut(s) 426
BseRI GAGGAG 2 cut(s) 120, 201
BseSI GKGCMC 1 cut(s) 388
BshFI GGCC 2 cut(s) 181, 275
BshNI GGYRCC 2 cut(s) 89, 343
BsiHKAI GWGCWC 1 cut(s) 388
BsiSI CCGG 2 cut(s) 272, 368
BslI CCNNNNNNNGG 2 cut(s) 177, 239
BsmAI GTCTC 1 cut(s) 84
BsnI GGCC 2 cut(s) 181, 275
Bsp1286I GDGCHC 1 cut(s) 388
Bsp143I GATC 2 cut(s) 242, 391
Bsp19I CCATGG 1 cut(s) 34
BspANI GGCC 2 cut(s) 181, 275
BspLI GGNNCC 2 cut(s) 91, 345
BspPI GGATC 1 cut(s) 250
BspQI GCTCTTC 1 cut(s) 34
BspT107I GGYRCC 2 cut(s) 89, 343
BsrDI GCAATG 1 cut(s) 398
BsrFI RCCGGY 2 cut(s) 271, 367
BsrI ACTGG 1 cut(s) 426
BssAI RCCGGY 2 cut(s) 271, 367
BssECI CCNNGG 2 cut(s) 34, 410
BssMI GATC 2 cut(s) 242, 391
BssSI CACGAG 2 cut(s) 387, 452
BssT1I CCWWGG 2 cut(s) 34, 410
Bst2BI CACGAG 2 cut(s) 387, 452
Bst2UI CCWGG 1 cut(s) 87
Bst4CI ACNGT 1 cut(s) 383
Bst6I CTCTTC 2 cut(s) 34, 283
BstDEI CTNAG 2 cut(s) 234, 521
BstDSI CCRYGG 1 cut(s) 34
BstENI CCTNNNNNAGG 1 cut(s) 237
BstF5I GGATG 1 cut(s) 444
BstKTI GATC 2 cut(s) 245, 394
BstMAI GTCTC 1 cut(s) 84
BstMBI GATC 2 cut(s) 242, 391
BstNI CCWGG 1 cut(s) 87
BstSCI CCNGG 1 cut(s) 85
BstSLI GKGCMC 1 cut(s) 388
BstV2I GAAGAC 1 cut(s) 33
BstXI CCANNNNNNTGG 1 cut(s) 72
BsuRI GGCC 2 cut(s) 181, 275
BtgI CCRYGG 1 cut(s) 34
BtsCI GGATG 1 cut(s) 444
BtsIMutI CAGTG 1 cut(s) 379
Cfr10I RCCGGY 2 cut(s) 271, 367
CsiI ACCWGGT 1 cut(s) 85
Csp6I GTAC 5 cut(s) 90, 106, 199, 363, 515
CviAII CATG 1 cut(s) 35
CviJI RGCY 9 cut(s) 5, 44, 117, 181, 238, 275, 408, 462, 468
CviKI_1 RGCY 9 cut(s) 5, 44, 117, 181, 238, 275, 408, 462, 468
CviQI GTAC 5 cut(s) 90, 106, 199, 363, 515
DdeI CTNAG 2 cut(s) 234, 521
DpnI GATC 2 cut(s) 244, 393
DpnII GATC 2 cut(s) 242, 391
Eam1104I CTCTTC 2 cut(s) 34, 283
EarI CTCTTC 2 cut(s) 34, 283
Eco130I CCWWGG 2 cut(s) 34, 410
Eco147I AGGCCT 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 471
EcoNI CCTNNNNNAGG 1 cut(s) 237
EcoRII CCWGG 1 cut(s) 85
EcoT14I CCWWGG 2 cut(s) 34, 410
ErhI CCWWGG 2 cut(s) 34, 410
FaeI CATG 1 cut(s) 38
FaiI YATR 4 cut(s) 36, 459, 465, 502
FatI CATG 1 cut(s) 34
FblI GTMKAC 1 cut(s) 308
FokI GGATG 1 cut(s) 451
FspBI CTAG 1 cut(s) 239
HaeIII GGCC 2 cut(s) 181, 275
HapII CCGG 2 cut(s) 272, 368
Hin1II CATG 1 cut(s) 38
HincII GTYRAC 1 cut(s) 309
HindII GTYRAC 1 cut(s) 309
HinfI GANTC 2 cut(s) 77, 431
HpaII CCGG 2 cut(s) 272, 368
HphI GGTGA 1 cut(s) 261
Hpy166II GTNNAC 4 cut(s) 309, 365, 386, 449
Hpy188III TCNNGA 1 cut(s) 246
Hpy8I GTNNAC 4 cut(s) 309, 365, 386, 449
Hpy99I CGWCG 1 cut(s) 310
HpyAV CCTTC 2 cut(s) 156, 357
HpyCH4III ACNGT 1 cut(s) 383
HpyCH4V TGCA 3 cut(s) 50, 386, 418
HpyF3I CTNAG 2 cut(s) 234, 521
Hsp92II CATG 1 cut(s) 38
KpnI GGTACC 1 cut(s) 93
Kzo9I GATC 2 cut(s) 242, 391
LguI GCTCTTC 1 cut(s) 34
LpnPI CCDG 8 cut(s) 72, 99, 285, 369, 381, 407, 420, 474
LweI GCATC 2 cut(s) 329, 429
MabI ACCWGGT 1 cut(s) 85
MaeI CTAG 1 cut(s) 239
MalI GATC 2 cut(s) 244, 393
MboI GATC 2 cut(s) 242, 391
MboII GAAGA 6 cut(s) 38, 51, 270, 273, 315, 342
MfeI CAATTG 1 cut(s) 70
MhlI GDGCHC 1 cut(s) 388
MluCI AATT 4 cut(s) 70, 166, 292, 426
MlyI GAGTC 1 cut(s) 86
MnlI CCTC 5 cut(s) 55, 138, 141, 222, 286
MseI TTAA 1 cut(s) 506
MslI CAYNNNNRTG 1 cut(s) 456
MspI CCGG 2 cut(s) 272, 368
MspR9I CCNGG 1 cut(s) 87
MunI CAATTG 1 cut(s) 70
MvaI CCWGG 1 cut(s) 87
NcoI CCATGG 1 cut(s) 34
NdeII GATC 2 cut(s) 242, 391
NlaIII CATG 1 cut(s) 38
NlaIV GGNNCC 2 cut(s) 91, 345
PceI AGGCCT 1 cut(s) 181
PciSI GCTCTTC 1 cut(s) 34
PcsI WCGNNNNNNNCGW 1 cut(s) 311
PfeI GAWTC 1 cut(s) 431
PflFI GACNNNGTC 1 cut(s) 313
PleI GAGTC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 85
Psp6I CCWGG 1 cut(s) 85
PspGI CCWGG 1 cut(s) 85
PspN4I GGNNCC 2 cut(s) 91, 345
PsyI GACNNNGTC 1 cut(s) 313
RsaI GTAC 5 cut(s) 91, 107, 200, 364, 516
RsaNI GTAC 5 cut(s) 90, 106, 199, 363, 515
RseI CAYNNNNRTG 1 cut(s) 456
SalI GTCGAC 1 cut(s) 307
SapI GCTCTTC 1 cut(s) 34
SaqAI TTAA 1 cut(s) 506
Sau3AI GATC 2 cut(s) 242, 391
ScaI AGTACT 1 cut(s) 200
SchI GAGTC 1 cut(s) 86
ScrFI CCNGG 1 cut(s) 87
SduI GDGCHC 1 cut(s) 388
SetI ASST 7 cut(s) 91, 130, 148, 240, 302, 493, 516
SexAI ACCWGGT 1 cut(s) 85
SfaNI GCATC 2 cut(s) 329, 429
SgrAI CRCCGGYG 1 cut(s) 367
SmiMI CAYNNNNRTG 1 cut(s) 456
SmlI CTYRAG 1 cut(s) 469
SmoI CTYRAG 1 cut(s) 469
Sse9I AATT 4 cut(s) 70, 166, 292, 426
SseBI AGGCCT 1 cut(s) 181
SspMI CTAG 1 cut(s) 239
StuI AGGCCT 1 cut(s) 181
StyD4I CCNGG 1 cut(s) 85
StyI CCWWGG 2 cut(s) 34, 410
TaaI ACNGT 1 cut(s) 383
TaqI TCGA 2 cut(s) 308, 394
TasI AATT 4 cut(s) 70, 166, 292, 426
TatI WGTACW 2 cut(s) 198, 362
TfiI GAWTC 1 cut(s) 431
Tru1I TTAA 1 cut(s) 506
Tru9I TTAA 1 cut(s) 506
TscAI CASTG 1 cut(s) 386
TspDTI ATGAA 1 cut(s) 489
TspRI CASTG 1 cut(s) 386
Tth111I GACNNNGTC 1 cut(s) 313
VneI GTGCAC 1 cut(s) 384
XagI CCTNNNNNAGG 1 cut(s) 237
XapI RAATTY 2 cut(s) 166, 292
XmiI GTMKAC 1 cut(s) 308
XspI CTAG 1 cut(s) 239
ZrmI AGTACT 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.