AT3G56260

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0017491
Physical Location & Seq
Reverse (-)
20867970 .. 20869024
1055 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G56260.2

Sequence Viewer

Length: 531 bp
ATGACTTTGCAATCGATGAAGAGAGATCCTCCTACTATGGCGGAGCCTCCATACCATTCATATGGGAGTCAAGGCCAGGAACACCCAAAAACCACCTCTGCTCCGATTCCTCTCTTCCTCTGCCTCTCACACCGCCGCCCTCATACTACTCCTCCGGGATTTTGTCGACACCAAGGACGCAAAGCAAGTGATCTCAGGAGGAGCAATCACGGTAGCAAGAAGACGGCAAGCTCATCGTTTTCTTGGTCTTCTACGTCATCTTCATCTTCCTTTTCCTCCTCGCCACCACATTCTTTGAAAAAACGTATGAGTCACGACAAAAAATCGCCACTTCTGTACGCTAACTACGAAGAGGATGAGCTTAGGTCTTCACCAACCTCGACTCTGTGTTGCTCCAACGGGGGAAGACTTGGCTGTAGTTCTTCAATGGGGAGTGTGACAAGAGCTCTGTTCTCTGGGTCAATGGAGGGTATGAAGAGACATGAGACCACAGGTAAAGCTCTAATCATCAGCGACATGAATAAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF688

Protein Analysis

176

Amino Acids

19.22

Weight (kDa)

9.84

Isoelectric Point (pI)

71.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017491)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06930 AT3G56260 AT3G56260
prunus_persica Prupe.6G043800_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0072421
rosa_roxburghii Rroxscaffold_1G00008790
rosa_rugosa Rorug05G0418000
rosa_samantha Rh5AG474500 Rh5BG494500 Rh5CG518600 Rh5DG506700
rosa_wichuraiana Rw5G044060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 166
AciI CCGC 3 cut(s) 41, 133, 136
AclWI GGATC 1 cut(s) 20
AfaI GTAC 1 cut(s) 338
AgsI TTSAA 2 cut(s) 298, 426
AjnI CCWGG 1 cut(s) 75
AluBI AGCT 5 cut(s) 231, 361, 446, 500, 527
AluI AGCT 5 cut(s) 231, 361, 446, 500, 527
Alw21I GWGCWC 1 cut(s) 448
Alw26I GTCTC 2 cut(s) 472, 479
AlwI GGATC 1 cut(s) 20
AoxI GGCC 1 cut(s) 73
AsuC2I CCSGG 1 cut(s) 156
AsuHPI GGTGA 1 cut(s) 363
BanII GRGCYC 1 cut(s) 448
BbsI GAAGAC 4 cut(s) 227, 240, 360, 412
Bbv12I GWGCWC 1 cut(s) 448
BceAI ACGGC 1 cut(s) 240
BcgI CGANNNNNNTGC 2 cut(s) 216, 250
BciT130I CCWGG 1 cut(s) 77
BcnI CCSGG 1 cut(s) 156
BcoDI GTCTC 2 cut(s) 472, 479
BfmI CTRYAG 1 cut(s) 415
BisI GCNGC 1 cut(s) 136
BlsI GCNGC 1 cut(s) 137
Bme1390I CCNGG 2 cut(s) 77, 156
BmiI GGNNCC 1 cut(s) 45
BmrFI CCNGG 2 cut(s) 77, 156
BpiI GAAGAC 4 cut(s) 227, 240, 360, 412
BplI GAGNNNNNCTC 2 cut(s) 13, 45
Bpu10I CCTNAGC 1 cut(s) 362
BpuMI CCSGG 1 cut(s) 156
Bsa29I ATCGAT 1 cut(s) 14
BsaI GGTCTC 1 cut(s) 479
BsaJI CCNNGG 1 cut(s) 172
BsaXI ACNNNNNCTCC 4 cut(s) 85, 115, 136, 166
BseBI CCWGG 1 cut(s) 77
BseCI ATCGAT 1 cut(s) 14
BseDI CCNNGG 1 cut(s) 172
BseGI GGATG 1 cut(s) 361
BseMII CTCAG 1 cut(s) 208
BseRI GAGGAG 3 cut(s) 141, 214, 268
BshFI GGCC 1 cut(s) 75
BshVI ATCGAT 1 cut(s) 14
BsiHKAI GWGCWC 1 cut(s) 448
BsiSI CCGG 1 cut(s) 155
BsmAI GTCTC 2 cut(s) 472, 479
BsnI GGCC 1 cut(s) 75
Bso31I GGTCTC 1 cut(s) 479
Bsp1286I GDGCHC 1 cut(s) 448
Bsp143I GATC 2 cut(s) 25, 190
BspACI CCGC 3 cut(s) 41, 133, 136
BspANI GGCC 1 cut(s) 75
BspCNI CTCAG 1 cut(s) 207
BspDI ATCGAT 1 cut(s) 14
BspLI GGNNCC 1 cut(s) 45
BspPI GGATC 1 cut(s) 20
BspTNI GGTCTC 1 cut(s) 479
BssECI CCNNGG 1 cut(s) 172
BssMI GATC 2 cut(s) 25, 190
BssT1I CCWWGG 1 cut(s) 172
Bst2UI CCWGG 1 cut(s) 77
Bst4CI ACNGT 1 cut(s) 212
Bst6I CTCTTC 4 cut(s) 14, 119, 345, 470
BstC8I GCNNGC 1 cut(s) 229
BstDEI CTNAG 2 cut(s) 194, 362
BstF5I GGATG 1 cut(s) 361
BstKTI GATC 2 cut(s) 28, 193
BstMAI GTCTC 2 cut(s) 472, 479
BstMBI GATC 2 cut(s) 25, 190
BstNI CCWGG 1 cut(s) 77
BstSCI CCNGG 2 cut(s) 75, 154
BstSFI CTRYAG 1 cut(s) 415
BstV2I GAAGAC 4 cut(s) 227, 240, 360, 412
BstX2I RGATCY 1 cut(s) 25
BstXI CCANNNNNNTGG 1 cut(s) 62
BstYI RGATCY 1 cut(s) 25
Bsu15I ATCGAT 1 cut(s) 14
BsuRI GGCC 1 cut(s) 75
BsuTUI ATCGAT 1 cut(s) 14
BtsCI GGATG 1 cut(s) 361
Cac8I GCNNGC 1 cut(s) 229
ClaI ATCGAT 1 cut(s) 14
CseI GACGC 1 cut(s) 186
Csp6I GTAC 1 cut(s) 337
CspCI CAANNNNNGTGG 2 cut(s) 276, 311
CviAII CATG 2 cut(s) 482, 517
CviJI RGCY 8 cut(s) 46, 75, 231, 361, 414, 446, 500, 527
CviKI_1 RGCY 8 cut(s) 46, 75, 231, 361, 414, 446, 500, 527
CviQI GTAC 1 cut(s) 337
DdeI CTNAG 2 cut(s) 194, 362
DpnI GATC 2 cut(s) 27, 192
DpnII GATC 2 cut(s) 25, 190
Eam1104I CTCTTC 4 cut(s) 14, 119, 345, 470
EarI CTCTTC 4 cut(s) 14, 119, 345, 470
EciI GGCGGA 1 cut(s) 56
Ecl136II GAGCTC 1 cut(s) 446
Eco130I CCWWGG 1 cut(s) 172
Eco24I GRGCYC 1 cut(s) 448
Eco31I GGTCTC 1 cut(s) 479
Eco53kI GAGCTC 1 cut(s) 446
EcoICRI GAGCTC 1 cut(s) 446
EcoRII CCWGG 1 cut(s) 75
EcoT14I CCWWGG 1 cut(s) 172
EcoT38I GRGCYC 1 cut(s) 448
ErhI CCWWGG 1 cut(s) 172
FaeI CATG 2 cut(s) 485, 520
FaiI YATR 9 cut(s) 38, 52, 61, 63, 144, 308, 473, 483, 518
FatI CATG 2 cut(s) 481, 516
FauNDI CATATG 1 cut(s) 61
FblI GTMKAC 1 cut(s) 166
Fnu4HI GCNGC 1 cut(s) 136
FokI GGATG 1 cut(s) 368
FriOI GRGCYC 1 cut(s) 448
Fsp4HI GCNGC 1 cut(s) 136
GluI GCNGC 1 cut(s) 136
HaeIII GGCC 1 cut(s) 75
HapII CCGG 1 cut(s) 155
HgaI GACGC 1 cut(s) 186
Hin1II CATG 2 cut(s) 485, 520
HincII GTYRAC 1 cut(s) 167
HindII GTYRAC 1 cut(s) 167
HindIII AAGCTT 1 cut(s) 525
HinfI GANTC 4 cut(s) 67, 106, 310, 382
HpaII CCGG 1 cut(s) 155
HphI GGTGA 1 cut(s) 363
Hpy166II GTNNAC 1 cut(s) 167
Hpy188I TCNGA 1 cut(s) 105
Hpy188III TCNNGA 2 cut(s) 196, 314
Hpy8I GTNNAC 1 cut(s) 167
HpyCH4III ACNGT 1 cut(s) 212
HpyCH4IV ACGT 2 cut(s) 254, 304
HpyCH4V TGCA 1 cut(s) 10
HpyF3I CTNAG 2 cut(s) 194, 362
HpySE526I ACGT 2 cut(s) 254, 304
Hsp92II CATG 2 cut(s) 485, 520
Kzo9I GATC 2 cut(s) 25, 190
LmnI GCTCC 4 cut(s) 43, 106, 201, 398
LpnPI CCDG 6 cut(s) 62, 89, 168, 181, 441, 477
MaeII ACGT 2 cut(s) 254, 304
MaeIII GTNAC 2 cut(s) 311, 436
MalI GATC 2 cut(s) 27, 192
MboI GATC 2 cut(s) 25, 190
MflI RGATCY 1 cut(s) 25
MhlI GDGCHC 1 cut(s) 448
MlyI GAGTC 3 cut(s) 76, 319, 376
MmeI TCCRAC 1 cut(s) 420
MslI CAYNNNNRTG 1 cut(s) 60
MspI CCGG 1 cut(s) 155
MspR9I CCNGG 2 cut(s) 77, 156
MvaI CCWGG 1 cut(s) 77
NciI CCSGG 1 cut(s) 156
NdeI CATATG 1 cut(s) 61
NdeII GATC 2 cut(s) 25, 190
NlaIII CATG 2 cut(s) 485, 520
NlaIV GGNNCC 1 cut(s) 45
NmuCI GTSAC 2 cut(s) 311, 436
PcsI WCGNNNNNNNCGW 1 cut(s) 345
PfeI GAWTC 1 cut(s) 106
PfoI TCCNGGA 1 cut(s) 154
PkrI GCNGC 1 cut(s) 137
PleI GAGTC 3 cut(s) 75, 318, 376
PpsI GAGTC 3 cut(s) 75, 318, 376
Psp124BI GAGCTC 1 cut(s) 448
Psp6I CCWGG 1 cut(s) 75
PspGI CCWGG 1 cut(s) 75
PspN4I GGNNCC 1 cut(s) 45
PsuI RGATCY 1 cut(s) 25
RsaI GTAC 1 cut(s) 338
RsaNI GTAC 1 cut(s) 337
RseI CAYNNNNRTG 1 cut(s) 60
SacI GAGCTC 1 cut(s) 448
SalI GTCGAC 1 cut(s) 165
SatI GCNGC 1 cut(s) 136
Sau3AI GATC 2 cut(s) 25, 190
SchI GAGTC 3 cut(s) 76, 319, 376
ScrFI CCNGG 2 cut(s) 77, 156
SduI GDGCHC 1 cut(s) 448
SfcI CTRYAG 1 cut(s) 415
SmiMI CAYNNNNRTG 1 cut(s) 60
SsiI CCGC 3 cut(s) 41, 133, 136
SstI GAGCTC 1 cut(s) 448
StyD4I CCNGG 2 cut(s) 75, 154
StyI CCWWGG 1 cut(s) 172
TaaI ACNGT 1 cut(s) 212
TaiI ACGT 2 cut(s) 257, 307
TaqI TCGA 3 cut(s) 14, 166, 380
TauI GCSGC 1 cut(s) 138
TfiI GAWTC 1 cut(s) 106
TseFI GTSAC 2 cut(s) 311, 436
Tsp45I GTSAC 2 cut(s) 311, 436
TspDTI ATGAA 4 cut(s) 32, 48, 252, 488
XmiI GTMKAC 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.