AT1G07300

JOSEPHIN-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015899
Physical Location & Seq
Reverse (-)
2245693 .. 2247240
1548 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G07300.3

Sequence Viewer

Length: 387 bp
ATGTCAGCTACTGGTATAAAACGGTCCAACCTCAACACTAGACCGGTTCAGAGAGATGCTTCGGCTAAGCAAACAGCTATCAAGGGACCTTATGGTAAGAGTCCGGGATGCACAACAAGCTGCGGATTAAGGTTACCGAGGAAAACAGAAGTGACAGCAGCAAAATTGATCAAGCATCTTGGATGCAAATTTGCAAAAGGTTTGCGTCTGGTGGTGATGAGGAAGAAGAAAAGATCTCCACCGTCGAAGGTTTCTTCTTTTTCTGGGAGGTCTCAGCCACCAATCATCCCAATAAACAATGACAGTCATCGATCAGAGGCCATAGAAGACTGCATACAGTTCATCAACTCATCATCCTCCTTCACCAGATCAAACTCTACTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

13.89

Weight (kDa)

10.86

Isoelectric Point (pI)

69.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015899)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07300 AT1G07300 AT1G07300
fragaria_vesca FvH4_3g38251
prunus_persica Prupe.6G060400_v2.0.a1
pyrus_communis pycom03g05970
rosa_laevigata RLG00000036007
rosa_multiflora Rmu_sc0000376.1_g000027
rosa_roxburghii Rroxscaffold_1G00012080
rosa_rugosa Rorug05G0392700
rosa_samantha Rh5AG450300 Rh5BG468700 Rh5CG490900 Rh5DG482200
rosa_wichuraiana Rw0G009880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 123
AcsI RAATTY 1 cut(s) 188
AgeI ACCGGT 1 cut(s) 43
AluBI AGCT 3 cut(s) 8, 77, 120
AluI AGCT 3 cut(s) 8, 77, 120
Alw26I GTCTC 1 cut(s) 276
AlwNI CAGNNNCTG 1 cut(s) 11
AoxI GGCC 1 cut(s) 318
ApeKI GCWGC 2 cut(s) 120, 158
ApoI RAATTY 1 cut(s) 188
AsiGI ACCGGT 1 cut(s) 43
AspS9I GGNCC 2 cut(s) 24, 86
AsuC2I CCSGG 1 cut(s) 105
AsuHPI GGTGA 2 cut(s) 226, 355
AvaII GGWCC 2 cut(s) 24, 86
BarI GAAGNNNNNNTAC 2 cut(s) 318, 350
BbsI GAAGAC 1 cut(s) 333
BbvI GCAGC 2 cut(s) 107, 170
BclI TGATCA 1 cut(s) 168
BcnI CCSGG 1 cut(s) 105
BcoDI GTCTC 1 cut(s) 276
BfaI CTAG 1 cut(s) 39
BglII AGATCT 1 cut(s) 233
BisI GCNGC 2 cut(s) 121, 159
BlpI GCTNAGC 1 cut(s) 66
BlsI GCNGC 2 cut(s) 122, 160
Bme1390I CCNGG 1 cut(s) 105
Bme18I GGWCC 2 cut(s) 24, 86
BmgT120I GGNCC 2 cut(s) 24, 86
BmiI GGNNCC 1 cut(s) 87
BmrFI CCNGG 1 cut(s) 105
BmsI GCATC 4 cut(s) 46, 98, 173, 184
BpiI GAAGAC 1 cut(s) 333
Bpu1102I GCTNAGC 1 cut(s) 66
BpuMI CCSGG 1 cut(s) 105
Bsa29I ATCGAT 1 cut(s) 310
BsaI GGTCTC 1 cut(s) 276
BsaJI CCNNGG 1 cut(s) 137
BsaWI WCCGGW 1 cut(s) 43
Bse118I RCCGGY 1 cut(s) 43
Bse1I ACTGG 1 cut(s) 16
BseCI ATCGAT 1 cut(s) 310
BseDI CCNNGG 1 cut(s) 137
BseGI GGATG 4 cut(s) 113, 188, 285, 353
BseMII CTCAG 1 cut(s) 287
BseNI ACTGG 1 cut(s) 16
BseXI GCAGC 2 cut(s) 107, 170
BshFI GGCC 1 cut(s) 320
BshTI ACCGGT 1 cut(s) 43
BshVI ATCGAT 1 cut(s) 310
BsiSI CCGG 2 cut(s) 44, 104
BslFI GGGAC 1 cut(s) 99
BsmAI GTCTC 1 cut(s) 276
BsmFI GGGAC 1 cut(s) 99
BsnI GGCC 1 cut(s) 320
Bso31I GGTCTC 1 cut(s) 276
Bsp143I GATC 4 cut(s) 168, 233, 311, 368
Bsp1720I GCTNAGC 1 cut(s) 66
BspACI CCGC 1 cut(s) 123
BspANI GGCC 1 cut(s) 320
BspCNI CTCAG 1 cut(s) 286
BspDI ATCGAT 1 cut(s) 310
BspLI GGNNCC 1 cut(s) 87
BspTNI GGTCTC 1 cut(s) 276
BsrFI RCCGGY 1 cut(s) 43
BsrI ACTGG 1 cut(s) 16
BssAI RCCGGY 1 cut(s) 43
BssECI CCNNGG 1 cut(s) 137
BssMI GATC 4 cut(s) 168, 233, 311, 368
Bst4CI ACNGT 4 cut(s) 24, 243, 305, 339
BstDEI CTNAG 2 cut(s) 66, 273
BstEII GGTNACC 1 cut(s) 132
BstF5I GGATG 4 cut(s) 113, 188, 285, 353
BstKTI GATC 4 cut(s) 171, 236, 314, 371
BstMAI GTCTC 1 cut(s) 276
BstMBI GATC 4 cut(s) 168, 233, 311, 368
BstMWI GCNNNNNNNGC 1 cut(s) 117
BstPI GGTNACC 1 cut(s) 132
BstSCI CCNGG 1 cut(s) 103
BstV1I GCAGC 2 cut(s) 107, 170
BstV2I GAAGAC 1 cut(s) 333
BstX2I RGATCY 1 cut(s) 233
BstYI RGATCY 1 cut(s) 233
Bsu15I ATCGAT 1 cut(s) 310
BsuRI GGCC 1 cut(s) 320
BsuTUI ATCGAT 1 cut(s) 310
BtsCI GGATG 4 cut(s) 113, 188, 285, 353
CaiI CAGNNNCTG 1 cut(s) 11
Cfr10I RCCGGY 1 cut(s) 43
Cfr13I GGNCC 2 cut(s) 24, 86
ClaI ATCGAT 1 cut(s) 310
CseI GACGC 1 cut(s) 194
CspAI ACCGGT 1 cut(s) 43
CviJI RGCY 6 cut(s) 8, 65, 77, 120, 277, 320
CviKI_1 RGCY 6 cut(s) 8, 65, 77, 120, 277, 320
DdeI CTNAG 2 cut(s) 66, 273
DpnI GATC 4 cut(s) 170, 235, 313, 370
DpnII GATC 4 cut(s) 168, 233, 311, 368
Eco31I GGTCTC 1 cut(s) 276
Eco47I GGWCC 2 cut(s) 24, 86
Eco91I GGTNACC 1 cut(s) 132
EcoO109I RGGNCCY 1 cut(s) 86
EcoO65I GGTNACC 1 cut(s) 132
FaiI YATR 4 cut(s) 17, 93, 323, 335
FaqI GGGAC 1 cut(s) 99
FbaI TGATCA 1 cut(s) 168
Fnu4HI GCNGC 2 cut(s) 121, 159
FokI GGATG 4 cut(s) 120, 195, 272, 340
Fsp4HI GCNGC 2 cut(s) 121, 159
FspBI CTAG 1 cut(s) 39
GluI GCNGC 2 cut(s) 121, 159
HaeIII GGCC 1 cut(s) 320
HapII CCGG 2 cut(s) 44, 104
HgaI GACGC 1 cut(s) 194
HinfI GANTC 1 cut(s) 100
HpaII CCGG 2 cut(s) 44, 104
HphI GGTGA 2 cut(s) 226, 355
Hpy188I TCNGA 2 cut(s) 51, 316
Hpy99I CGWCG 1 cut(s) 247
HpyAV CCTTC 2 cut(s) 241, 370
HpyCH4III ACNGT 4 cut(s) 24, 243, 305, 339
HpyCH4V TGCA 4 cut(s) 111, 186, 194, 333
HpyF10VI GCNNNNNNNGC 1 cut(s) 117
HpyF3I CTNAG 2 cut(s) 66, 273
Ksp22I TGATCA 1 cut(s) 168
Kzo9I GATC 4 cut(s) 168, 233, 311, 368
LpnPI CCDG 5 cut(s) 57, 117, 194, 249, 379
Lsp1109I GCAGC 2 cut(s) 107, 170
LweI GCATC 4 cut(s) 46, 98, 173, 184
MaeI CTAG 1 cut(s) 39
MaeIII GTNAC 2 cut(s) 132, 151
MalI GATC 4 cut(s) 170, 235, 313, 370
MboI GATC 4 cut(s) 168, 233, 311, 368
MboII GAAGA 4 cut(s) 235, 238, 246, 338
MflI RGATCY 1 cut(s) 233
MluCI AATT 2 cut(s) 164, 188
MlyI GAGTC 1 cut(s) 109
MmeI TCCRAC 1 cut(s) 51
MnlI CCTC 6 cut(s) 41, 132, 213, 261, 310, 367
MseI TTAA 2 cut(s) 128, 385
MspI CCGG 2 cut(s) 44, 104
MspR9I CCNGG 1 cut(s) 105
MwoI GCNNNNNNNGC 1 cut(s) 117
NciI CCSGG 1 cut(s) 105
NdeII GATC 4 cut(s) 168, 233, 311, 368
NlaIV GGNNCC 1 cut(s) 87
NmuCI GTSAC 1 cut(s) 151
PfoI TCCNGGA 1 cut(s) 103
PinAI ACCGGT 1 cut(s) 43
PkrI GCNGC 2 cut(s) 122, 160
PleI GAGTC 1 cut(s) 108
PpsI GAGTC 1 cut(s) 108
PpuMI RGGWCCY 1 cut(s) 86
Psp5II RGGWCCY 1 cut(s) 86
PspEI GGTNACC 1 cut(s) 132
PspN4I GGNNCC 1 cut(s) 87
PspPI GGNCC 2 cut(s) 24, 86
PspPPI RGGWCCY 1 cut(s) 86
PstNI CAGNNNCTG 1 cut(s) 11
PsuI RGATCY 1 cut(s) 233
SaqAI TTAA 2 cut(s) 128, 385
SatI GCNGC 2 cut(s) 121, 159
Sau3AI GATC 4 cut(s) 168, 233, 311, 368
Sau96I GGNCC 2 cut(s) 24, 86
SchI GAGTC 1 cut(s) 109
ScrFI CCNGG 1 cut(s) 105
SetI ASST 9 cut(s) 10, 33, 79, 91, 122, 134, 202, 252, 272
SfaNI GCATC 4 cut(s) 46, 98, 173, 184
SinI GGWCC 2 cut(s) 24, 86
Sse9I AATT 2 cut(s) 164, 188
SsiI CCGC 1 cut(s) 123
SspMI CTAG 1 cut(s) 39
StyD4I CCNGG 1 cut(s) 103
TaaI ACNGT 4 cut(s) 24, 243, 305, 339
TaqI TCGA 2 cut(s) 245, 310
TasI AATT 2 cut(s) 164, 188
Tru1I TTAA 2 cut(s) 128, 385
Tru9I TTAA 2 cut(s) 128, 385
TseFI GTSAC 1 cut(s) 151
TseI GCWGC 2 cut(s) 120, 158
Tsp45I GTSAC 1 cut(s) 151
TspDTI ATGAA 1 cut(s) 331
VpaK11BI GGWCC 2 cut(s) 24, 86
XapI RAATTY 1 cut(s) 188
XspI CTAG 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.