pycom03g05970

JOSEPHIN-like protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Reverse (-)
4720105 .. 4720470
366 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g05970.1

Sequence Viewer

Length: 366 bp
ATGGCAACAAGAGCCAAGACCCCGGTGAGCCACAGAGAGTACGTCAAGAAGAAACAAACTACCACAAGTAGCGTTGTGCAAGATGGAAGGTTTGCTGAAACTTTTAGATTCAGGTTTCCTATGTGGTCTGGATTCTTGCCCATGAGGCTACTCAAAAATCTTGCCGACAGGGTGGCGGGAACTCTATGTCTGGGCACGGCGTCTGTGAGGGCGAGGCCTTCGCGGAAGGACTCGTCATCTAGAAGATCGATGCCATTCATGGCTCCTGTTGATTCTCATAGAGAAGAAGCCATAGAAGATTGCATTGAGTTCATCAACTCTTCATCCATTTCAAGATCAACTTCTATGGCCAAACATTCTCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.64

Weight (kDa)

10.63

Isoelectric Point (pI)

71.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015899)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07300 AT1G07300 AT1G07300
fragaria_vesca FvH4_3g38251
prunus_persica Prupe.6G060400_v2.0.a1
pyrus_communis pycom03g05970
rosa_laevigata RLG00000036007
rosa_multiflora Rmu_sc0000376.1_g000027
rosa_roxburghii Rroxscaffold_1G00012080
rosa_rugosa Rorug05G0392700
rosa_samantha Rh5AG450300 Rh5BG468700 Rh5CG490900 Rh5DG482200
rosa_wichuraiana Rw0G009880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 223
AciI CCGC 2 cut(s) 176, 223
AcoI YGGCCR 1 cut(s) 348
AcyI GRCGYC 1 cut(s) 200
AfaI GTAC 1 cut(s) 41
AgsI TTSAA 1 cut(s) 333
AoxI GGCC 2 cut(s) 215, 348
AsuC2I CCSGG 1 cut(s) 23
AsuHPI GGTGA 1 cut(s) 37
BaeGI GKGCMC 1 cut(s) 197
BalI TGGCCA 1 cut(s) 350
BccI CCATC 1 cut(s) 77
BceAI ACGGC 1 cut(s) 213
BcnI CCSGG 1 cut(s) 23
BfaI CTAG 1 cut(s) 240
BglI GCCNNNNNGGC 1 cut(s) 145
Bme1390I CCNGG 1 cut(s) 23
BmiI GGNNCC 1 cut(s) 264
BmrFI CCNGG 1 cut(s) 23
BmsI GCATC 1 cut(s) 240
BpuMI CCSGG 1 cut(s) 23
Bsa29I ATCGAT 1 cut(s) 248
BsaHI GRCGYC 1 cut(s) 200
BsaJI CCNNGG 1 cut(s) 21
BseCI ATCGAT 1 cut(s) 248
BseDI CCNNGG 1 cut(s) 21
BseGI GGATG 1 cut(s) 323
BseSI GKGCMC 1 cut(s) 197
Bsh1236I CGCG 1 cut(s) 223
BshFI GGCC 2 cut(s) 217, 350
BshVI ATCGAT 1 cut(s) 248
BsiSI CCGG 1 cut(s) 23
BsnI GGCC 2 cut(s) 217, 350
Bsp1286I GDGCHC 1 cut(s) 197
Bsp143I GATC 2 cut(s) 245, 335
BspACI CCGC 2 cut(s) 176, 223
BspANI GGCC 2 cut(s) 217, 350
BspDI ATCGAT 1 cut(s) 248
BspFNI CGCG 1 cut(s) 223
BspLI GGNNCC 1 cut(s) 264
BssECI CCNNGG 1 cut(s) 21
BssMI GATC 2 cut(s) 245, 335
BssNI GRCGYC 1 cut(s) 200
Bst6I CTCTTC 1 cut(s) 325
BstACI GRCGYC 1 cut(s) 200
BstDEI CTNAG 1 cut(s) 363
BstF5I GGATG 1 cut(s) 323
BstFNI CGCG 1 cut(s) 223
BstKTI GATC 2 cut(s) 248, 338
BstMBI GATC 2 cut(s) 245, 335
BstMWI GCNNNNNNNGC 2 cut(s) 11, 145
BstSCI CCNGG 1 cut(s) 21
BstSLI GKGCMC 1 cut(s) 197
BstUI CGCG 1 cut(s) 223
Bsu15I ATCGAT 1 cut(s) 248
BsuRI GGCC 2 cut(s) 217, 350
BsuTUI ATCGAT 1 cut(s) 248
BtsCI GGATG 1 cut(s) 323
ClaI ATCGAT 1 cut(s) 248
CseI GACGC 1 cut(s) 189
Csp6I GTAC 1 cut(s) 40
CviAII CATG 2 cut(s) 142, 259
CviJI RGCY 7 cut(s) 14, 30, 148, 217, 263, 290, 350
CviKI_1 RGCY 7 cut(s) 14, 30, 148, 217, 263, 290, 350
CviQI GTAC 1 cut(s) 40
DdeI CTNAG 1 cut(s) 363
DpnI GATC 2 cut(s) 247, 337
DpnII GATC 2 cut(s) 245, 335
EaeI YGGCCR 1 cut(s) 348
Eam1104I CTCTTC 1 cut(s) 325
EarI CTCTTC 1 cut(s) 325
Eco147I AGGCCT 1 cut(s) 217
FaeI CATG 2 cut(s) 145, 262
FaiI YATR 7 cut(s) 122, 143, 187, 260, 279, 293, 347
FalI AAGNNNNNCTT 2 cut(s) 325, 357
FatI CATG 2 cut(s) 141, 258
FauI CCCGC 1 cut(s) 169
FokI GGATG 1 cut(s) 310
FspBI CTAG 1 cut(s) 240
HaeIII GGCC 2 cut(s) 217, 350
HapII CCGG 1 cut(s) 23
HgaI GACGC 1 cut(s) 189
Hin1I GRCGYC 1 cut(s) 200
Hin1II CATG 2 cut(s) 145, 262
HinfI GANTC 4 cut(s) 108, 132, 230, 272
HpaII CCGG 1 cut(s) 23
HphI GGTGA 1 cut(s) 37
Hpy188III TCNNGA 4 cut(s) 46, 129, 240, 333
HpyAV CCTTC 3 cut(s) 81, 220, 228
HpyCH4IV ACGT 1 cut(s) 42
HpyCH4V TGCA 2 cut(s) 79, 303
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 145
HpyF3I CTNAG 1 cut(s) 363
HpySE526I ACGT 1 cut(s) 42
Hsp92I GRCGYC 1 cut(s) 200
Hsp92II CATG 2 cut(s) 145, 262
Kzo9I GATC 2 cut(s) 245, 335
LmnI GCTCC 1 cut(s) 268
LpnPI CCDG 6 cut(s) 36, 97, 114, 154, 176, 279
LweI GCATC 1 cut(s) 240
MaeI CTAG 1 cut(s) 240
MaeII ACGT 1 cut(s) 42
MalI GATC 2 cut(s) 247, 337
MboI GATC 2 cut(s) 245, 335
MboII GAAGA 5 cut(s) 61, 255, 296, 308, 312
MhlI GDGCHC 1 cut(s) 197
MlsI TGGCCA 1 cut(s) 350
MluNI TGGCCA 1 cut(s) 350
MlyI GAGTC 1 cut(s) 224
MnlI CCTC 3 cut(s) 138, 201, 207
Mox20I TGGCCA 1 cut(s) 350
MscI TGGCCA 1 cut(s) 350
Msp20I TGGCCA 1 cut(s) 350
MspI CCGG 1 cut(s) 23
MspR9I CCNGG 1 cut(s) 23
MvnI CGCG 1 cut(s) 223
MwoI GCNNNNNNNGC 2 cut(s) 11, 145
NciI CCSGG 1 cut(s) 23
NdeII GATC 2 cut(s) 245, 335
NlaIII CATG 2 cut(s) 145, 262
NlaIV GGNNCC 1 cut(s) 264
PceI AGGCCT 1 cut(s) 217
PfeI GAWTC 3 cut(s) 108, 132, 272
PleI GAGTC 1 cut(s) 224
PpsI GAGTC 1 cut(s) 224
PspN4I GGNNCC 1 cut(s) 264
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
Sau3AI GATC 2 cut(s) 245, 335
SchI GAGTC 1 cut(s) 224
ScrFI CCNGG 1 cut(s) 23
SduI GDGCHC 1 cut(s) 197
SetI ASST 3 cut(s) 45, 92, 116
SfaNI GCATC 1 cut(s) 240
SseBI AGGCCT 1 cut(s) 217
SsiI CCGC 2 cut(s) 176, 223
SspMI CTAG 1 cut(s) 240
StuI AGGCCT 1 cut(s) 217
StyD4I CCNGG 1 cut(s) 21
TaiI ACGT 1 cut(s) 45
TaqI TCGA 1 cut(s) 248
TfiI GAWTC 3 cut(s) 108, 132, 272
TspDTI ATGAA 3 cut(s) 247, 301, 312
XbaI TCTAGA 1 cut(s) 239
XspI CTAG 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.