FvH4_3g38251

JOSEPHIN-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0015899
Physical Location & Seq
Forward (+)
32648466 .. 32649783
1318 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g38251.t1

Sequence Viewer

Length: 678 bp
ATGGCAATGAGAACCGAGACCCAGGTGAGCAACTGGGATTATGTGAACAAGAGGACAATCCTCTTTTCCAAACAAACTTCCAGCAAGAGAGTTGCTCAAAACACAAGGTTTGTTGACTTTAGGTTCAAGCTCTCTTCATGGTCGGGATTCTTGCCTATGAGGTTACTCAAACATTTTGCCGACAAGGTGGCTGGAACTCTATGCTTGGGTATGGTTTCGGCAAGGGCAAGACCTTCTCGAAATGATTCTTCATCCAGAAGATCGGTAAATGATTCTTCATCCAGAAGAACAATGCCATACGTGACTGCAGGTGATTGTCAAAGAGAAGAAGCCATAGAAGACTGCATTGAGTTCTTCAACTCTTCTTCTACTTTCTCAAGAGCAACTCCTATTGCGACACAGCCTGTCACCCCCTCGGCTTCGCCACCGTCACTTGCTGGCCGCCGTTTCCCGGCCACCCGTCAGCCTTCTCCGGCAACTCTGTCAGCCTCATGCATGCTGCCCCGCTCAGCGACTAGCCGGCGACAAGTTTTCCGGCCAACCTTGATCAATCATGGTGTTTTCCGTCCAGAGCTTCAATCCGGCCGGAAAACTTTTCCGGCCAGTCCTGGAAGGAGAGAAGCCGTCCTGGAAGCCTGTGCTGTCATCCGGGAAGGAGAGAAGCCGTCGCCGACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

226

Amino Acids

25.01

Weight (kDa)

11.07

Isoelectric Point (pI)

82.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015899)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07300 AT1G07300 AT1G07300
fragaria_vesca FvH4_3g38251
prunus_persica Prupe.6G060400_v2.0.a1
pyrus_communis pycom03g05970
rosa_laevigata RLG00000036007
rosa_multiflora Rmu_sc0000376.1_g000027
rosa_roxburghii Rroxscaffold_1G00012080
rosa_rugosa Rorug05G0392700
rosa_samantha Rh5AG450300 Rh5BG468700 Rh5CG490900 Rh5DG482200
rosa_wichuraiana Rw0G009880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 299
Acc36I ACCTGC 1 cut(s) 299
AccBSI CCGCTC 1 cut(s) 507
AciI CCGC 2 cut(s) 442, 505
AcoI YGGCCR 5 cut(s) 439, 453, 536, 583, 600
AfiI CCNNNNNNNGG 1 cut(s) 451
AgsI TTSAA 3 cut(s) 127, 358, 578
AjiI CACGTC 1 cut(s) 675
AjnI CCWGG 3 cut(s) 21, 607, 627
AluBI AGCT 2 cut(s) 130, 574
AluI AGCT 2 cut(s) 130, 574
Alw26I GTCTC 1 cut(s) 11
AoxI GGCC 5 cut(s) 439, 453, 536, 583, 600
ApeKI GCWGC 1 cut(s) 499
Asp700I GAANNNNTTC 1 cut(s) 244
AsuC2I CCSGG 2 cut(s) 452, 650
AsuHPI GGTGA 3 cut(s) 37, 323, 400
BbsI GAAGAC 1 cut(s) 345
BbvI GCAGC 1 cut(s) 486
BceAI ACGGC 3 cut(s) 429, 608, 649
BciT130I CCWGG 3 cut(s) 23, 609, 629
BclI TGATCA 1 cut(s) 546
BcnI CCSGG 2 cut(s) 452, 650
BcoDI GTCTC 1 cut(s) 11
BfaI CTAG 1 cut(s) 516
BfmI CTRYAG 1 cut(s) 306
BfuAI ACCTGC 1 cut(s) 299
BisI GCNGC 2 cut(s) 442, 500
BlpI GCTNAGC 1 cut(s) 508
BlsI GCNGC 2 cut(s) 443, 501
Bme1390I CCNGG 5 cut(s) 23, 452, 609, 629, 650
BmgBI CACGTC 1 cut(s) 675
BmrFI CCNGG 5 cut(s) 23, 452, 609, 629, 650
BmrI ACTGGG 1 cut(s) 43
BmuI ACTGGG 1 cut(s) 43
BpiI GAAGAC 1 cut(s) 345
BplI GAGNNNNNCTC 2 cut(s) 79, 111
Bpu1102I GCTNAGC 1 cut(s) 508
BpuEI CTTGAG 1 cut(s) 361
BpuMI CCSGG 2 cut(s) 452, 650
BsaAI YACGTR 1 cut(s) 301
BsaI GGTCTC 1 cut(s) 11
BsaJI CCNNGG 2 cut(s) 21, 414
Bsc4I CCNNNNNNNGG 1 cut(s) 451
Bse118I RCCGGY 1 cut(s) 519
Bse1I ACTGG 2 cut(s) 38, 603
Bse3DI GCAATG 1 cut(s) 12
BseBI CCWGG 3 cut(s) 23, 609, 629
BseDI CCNNGG 2 cut(s) 21, 414
BseGI GGATG 3 cut(s) 251, 278, 645
BseLI CCNNNNNNNGG 1 cut(s) 451
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 1 cut(s) 522
BseNI ACTGG 2 cut(s) 38, 603
BseX3I CGGCCG 1 cut(s) 583
BseXI GCAGC 1 cut(s) 486
Bsh1285I CGRYCG 1 cut(s) 586
BshFI GGCC 5 cut(s) 441, 455, 538, 585, 602
BsiEI CGRYCG 1 cut(s) 586
BsiSI CCGG 8 cut(s) 452, 473, 520, 535, 582, 586, 599, 649
BslI CCNNNNNNNGG 1 cut(s) 451
BsmAI GTCTC 1 cut(s) 11
BsnI GGCC 5 cut(s) 441, 455, 538, 585, 602
Bso31I GGTCTC 1 cut(s) 11
Bsp143I GATC 2 cut(s) 260, 546
Bsp1720I GCTNAGC 1 cut(s) 508
BspACI CCGC 2 cut(s) 442, 505
BspANI GGCC 5 cut(s) 441, 455, 538, 585, 602
BspCNI CTCAG 1 cut(s) 521
BspMAI CTGCAG 1 cut(s) 310
BspMI ACCTGC 1 cut(s) 299
BspTNI GGTCTC 1 cut(s) 11
BsrBI CCGCTC 1 cut(s) 507
BsrDI GCAATG 1 cut(s) 12
BsrFI RCCGGY 1 cut(s) 519
BsrI ACTGG 2 cut(s) 38, 603
BssAI RCCGGY 1 cut(s) 519
BssECI CCNNGG 2 cut(s) 21, 414
BssMI GATC 2 cut(s) 260, 546
Bst2UI CCWGG 3 cut(s) 23, 609, 629
Bst4CI ACNGT 1 cut(s) 429
Bst6I CTCTTC 2 cut(s) 139, 367
BstBAI YACGTR 1 cut(s) 301
BstC8I GCNNGC 3 cut(s) 439, 497, 521
BstDEI CTNAG 1 cut(s) 508
BstF5I GGATG 3 cut(s) 251, 278, 645
BstKTI GATC 2 cut(s) 263, 549
BstMAI GTCTC 1 cut(s) 11
BstMBI GATC 2 cut(s) 260, 546
BstMCI CGRYCG 1 cut(s) 586
BstNI CCWGG 3 cut(s) 23, 609, 629
BstNSI RCATGY 1 cut(s) 499
BstSCI CCNGG 5 cut(s) 21, 450, 607, 627, 648
BstSFI CTRYAG 1 cut(s) 306
BstV1I GCAGC 1 cut(s) 486
BstV2I GAAGAC 1 cut(s) 345
BstZI CGGCCG 1 cut(s) 583
BsuRI GGCC 5 cut(s) 441, 455, 538, 585, 602
BtrI CACGTC 1 cut(s) 675
BtsCI GGATG 3 cut(s) 251, 278, 645
BveI ACCTGC 1 cut(s) 299
Cac8I GCNNGC 3 cut(s) 439, 497, 521
Cfr10I RCCGGY 1 cut(s) 519
CviAII CATG 4 cut(s) 138, 492, 496, 554
DdeI CTNAG 1 cut(s) 508
DpnI GATC 2 cut(s) 262, 548
DpnII GATC 2 cut(s) 260, 546
EaeI YGGCCR 5 cut(s) 439, 453, 536, 583, 600
EagI CGGCCG 1 cut(s) 583
Eam1104I CTCTTC 2 cut(s) 139, 367
EarI CTCTTC 2 cut(s) 139, 367
EclXI CGGCCG 1 cut(s) 583
Eco31I GGTCTC 1 cut(s) 11
Eco52I CGGCCG 1 cut(s) 583
EcoRII CCWGG 3 cut(s) 21, 607, 627
EcoT22I ATGCAT 1 cut(s) 497
FaeI CATG 4 cut(s) 141, 495, 499, 557
FatI CATG 4 cut(s) 137, 491, 495, 553
FauI CCCGC 1 cut(s) 512
FbaI TGATCA 1 cut(s) 546
Fnu4HI GCNGC 2 cut(s) 442, 500
FokI GGATG 3 cut(s) 238, 265, 632
Fsp4HI GCNGC 2 cut(s) 442, 500
FspBI CTAG 1 cut(s) 516
GluI GCNGC 2 cut(s) 442, 500
HaeIII GGCC 5 cut(s) 441, 455, 538, 585, 602
HapII CCGG 8 cut(s) 452, 473, 520, 535, 582, 586, 599, 649
Hin1II CATG 4 cut(s) 141, 495, 499, 557
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HinfI GANTC 3 cut(s) 147, 245, 272
HpaII CCGG 8 cut(s) 452, 473, 520, 535, 582, 586, 599, 649
HphI GGTGA 3 cut(s) 37, 323, 400
Hpy166II GTNNAC 2 cut(s) 46, 115
Hpy188III TCNNGA 6 cut(s) 144, 237, 255, 282, 378, 569
Hpy8I GTNNAC 2 cut(s) 46, 115
Hpy99I CGWCG 2 cut(s) 670, 676
HpyAV CCTTC 4 cut(s) 243, 477, 606, 647
HpyCH4III ACNGT 1 cut(s) 429
HpyCH4IV ACGT 2 cut(s) 300, 674
HpyCH4V TGCA 3 cut(s) 308, 345, 495
HpyF3I CTNAG 1 cut(s) 508
HpySE526I ACGT 2 cut(s) 300, 674
Hsp92II CATG 4 cut(s) 141, 495, 499, 557
KroI GCCGGC 1 cut(s) 519
KroNI GCCGGC 1 cut(s) 521
Ksp22I TGATCA 1 cut(s) 546
Kzo9I GATC 2 cut(s) 260, 546
Lsp1109I GCAGC 1 cut(s) 486
MaeI CTAG 1 cut(s) 516
MaeII ACGT 2 cut(s) 300, 674
MaeIII GTNAC 4 cut(s) 162, 301, 406, 429
MalI GATC 2 cut(s) 262, 548
MbiI CCGCTC 1 cut(s) 507
MboI GATC 2 cut(s) 260, 546
MnlI CCTC 5 cut(s) 45, 71, 153, 424, 499
Mph1103I ATGCAT 1 cut(s) 497
MroNI GCCGGC 1 cut(s) 519
MroXI GAANNNNTTC 1 cut(s) 244
MspI CCGG 8 cut(s) 452, 473, 520, 535, 582, 586, 599, 649
MspR9I CCNGG 5 cut(s) 23, 452, 609, 629, 650
MvaI CCWGG 3 cut(s) 23, 609, 629
NaeI GCCGGC 1 cut(s) 521
NciI CCSGG 2 cut(s) 452, 650
NdeII GATC 2 cut(s) 260, 546
NgoMIV GCCGGC 1 cut(s) 519
NlaIII CATG 4 cut(s) 141, 495, 499, 557
NmeAIII GCCGAG 1 cut(s) 395
NmuCI GTSAC 3 cut(s) 301, 406, 429
NsiI ATGCAT 1 cut(s) 497
NspI RCATGY 1 cut(s) 499
PaeI GCATGC 1 cut(s) 499
PaqCI CACCTGC 1 cut(s) 299
PdiI GCCGGC 1 cut(s) 521
PdmI GAANNNNTTC 1 cut(s) 244
PfeI GAWTC 3 cut(s) 147, 245, 272
PfoI TCCNGGA 3 cut(s) 607, 627, 648
PkrI GCNGC 2 cut(s) 443, 501
Ppu21I YACGTR 1 cut(s) 301
Psp6I CCWGG 3 cut(s) 21, 607, 627
PspGI CCWGG 3 cut(s) 21, 607, 627
PstI CTGCAG 1 cut(s) 310
SatI GCNGC 2 cut(s) 442, 500
Sau3AI GATC 2 cut(s) 260, 546
ScrFI CCNGG 5 cut(s) 23, 452, 609, 629, 650
SfcI CTRYAG 1 cut(s) 306
SmlI CTYRAG 1 cut(s) 376
SmoI CTYRAG 1 cut(s) 376
SphI GCATGC 1 cut(s) 499
SsiI CCGC 2 cut(s) 442, 505
SspMI CTAG 1 cut(s) 516
StyD4I CCNGG 5 cut(s) 21, 450, 607, 627, 648
TaaI ACNGT 1 cut(s) 429
TaiI ACGT 2 cut(s) 303, 677
TaqI TCGA 1 cut(s) 238
TauI GCSGC 1 cut(s) 444
TfiI GAWTC 3 cut(s) 147, 245, 272
TseFI GTSAC 3 cut(s) 301, 406, 429
TseI GCWGC 1 cut(s) 499
Tsp45I GTSAC 3 cut(s) 301, 406, 429
TspDTI ATGAA 3 cut(s) 126, 240, 267
TspGWI ACGGA 1 cut(s) 554
XceI RCATGY 1 cut(s) 499
XmnI GAANNNNTTC 1 cut(s) 244
XspI CTAG 1 cut(s) 516
Zsp2I ATGCAT 1 cut(s) 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.