Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0020958

Physical Location & Seq

Genomic Coordinates Reverse (-)

2977792 .. 2979466

Gene Structure 1675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G09220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1515 bp

ATGTTCTTGTTCTCTTCACGTAGAATCACCTCTCTACGCTCTTACACCATAATCAAACATTCAAGTTGTTATTCGACTTTGGTTTCTGATGGTAACATCTTCTCGATTCAACACTTTCAATCTCTTATGCAAAAATATGAATCAAACCTTAAAATCATCCACCAGCTCCATTCACACTTCACCACTTCTGGGTTTCTTCTCCTTCATCAGAAGCAAAACTCTGGGAAACTTTTTCTATTCAATCCTCTGCTTCGATGCTATTCTCTTGGCGAAACCCCTCTTCATGCTTACTTCCTCTACGACCAACTCCAACGACTCCATTTCTTGTCTGATCACAATAAGAGTCTGCCTCCTTTTGATAGTTTCACTTACCTCTTTCTCCTGAAAGCGAGTTCGAATCCGCGGTTCCCATCTTTACTACTGGGAATTGGACTCCACGGGTTGACTCTAAAACTGGGTTTTGAATCTCATGTCTACGTGCAGACAGCTTTGGTTGGTATGTATCTTGTTGGTGGAAACATGATTGATGCTCACAAAGTGTTTGATGAAATGCCTGAGAGAAATCCGGTAACTTGGAATGTGATGATCACTGGCCTTACTAATTTGGGAGATTTCGAAAAAGCTCTTTGCTTTTTGGAGAAGATGCCGAATCGGACGGTAGTGTCTTGGACCACTATCATTGATGGGTATGCACGAGTAGATAAACCCAAGGAAGCTATACTCTTGTTTTCAAGAATGGTTGCTTGCGACGCAATAAAGCCCAACGAGATAACCATTCTCGCCATTCTCCCAGCTGTTTGGAACTTGGGAGACTTAAAGATGTGCGGATCAGTTCATGCTTATGTTGGGAAAAGAGGGTTTGTTCCATGTGATATCCGTGTGACTAACTCTCTCATCGACGCTTATGCAAAATGTGGGTGTATTCAAAGCGCGTTCAAGTTTTTCATAGAGATTCCAAACGGAAGGAAGAATCTTGTATCGTGGACAACGATGATCTCGGCGTTTGCAATTCACGGAATGGGAAAAGAAGCGGTCAGTATGTTTAAAGACATGGAAAGATTAGGATTGAAGCCGAACAGAGTGACCATGATCAGTGTTTTGAACGCTTGCAGCCATGGAGGTTTAGCAGAAGAAGAGTTTCTAGAGTTTTTCAACACGATGGTAAACGAGTACAAGATCACGCCGGATGTGAAGCACTATGGATGTCTAGTAGATATGTTGAGAAGAAAAGGAAGATTAGAAGAAGCAGAGAAGATTGCTTTGGAGATTCCAATAGAAGAAAAAGCTGTGGTTTGGAGAATGCTGCTTGGAGCTTGTAGCGTTTATGATGATGCTGAATTGGCTGAGAGGGTTACTAGAAAGCTAATGGAGCTAGAGAGAAGCCATGGAGGAGACTATGTGCTTATGTCCAACATCTTTTGTGGTACTGGAAGATTTTTAGATGCGCAGAGATTTCGGAAACAGATGGATGTTAGAGGAGTAGCTAAACTTCCAGGACATTCACAAGTAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0022626 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

504

Amino Acids

57.13

Weight (kDa)

8.77

Isoelectric Point (pI)

36.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	219 - 259	4.3e-07	PPR repeat family
PPR	PF01535	221 - 248	5.6e-06	PPR repeat
PPR_2	PF13041	324 - 371	2.1e-11	PPR repeat family
PPR	PF01535	326 - 356	1.5e-08	PPR repeat
E_motif	PF20431	442 - 503	1.4e-13	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09220
malus_domestica	MD02G1261700.v1.1
prunus_persica	Prupe.6G096600_v2.0.a1 Prupe.6G097400_v2.0.a1
pyrus_communis	pycom02g22380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	661
Acc16I	TGCGCA	1 cut(s)	1446
AccI	GTMKAC	1 cut(s)	474
AccII	CGCG	2 cut(s)	403, 932
AciI	CCGC	4 cut(s)	401, 403, 825, 1031
AclWI	GGATC	1 cut(s)	835
AdeI	CACNNNGTG	1 cut(s)	538
AfaI	GTAC	2 cut(s)	1172, 1426
AfiI	CCNNNNNNNGG	1 cut(s)	189
AjnI	CCWGG	1 cut(s)	1492
AjuI	GAANNNNNNNTTGG	2 cut(s)	1244, 1276
Alw26I	GTCTC	2 cut(s)	804, 1386
AlwI	GGATC	1 cut(s)	835
AoxI	GGCC	1 cut(s)	592
ApeKI	GCWGC	2 cut(s)	1110, 1303
Asp700I	GAANNNNTTC	1 cut(s)	1137
AspLEI	GCGC	2 cut(s)	932, 1447
AspS9I	GGNCC	1 cut(s)	669
AsuHPI	GGTGA	2 cut(s)	19, 172
AsuII	TTCGAA	2 cut(s)	395, 615
AvaII	GGWCC	1 cut(s)	669
BarI	GAAGNNNNNNTAC	2 cut(s)	1473, 1505
BauI	CACGAG	1 cut(s)	693
BbvI	GCAGC	2 cut(s)	1122, 1290
BccI	CCATC	5 cut(s)	83, 418, 677, 1153, 1459
BcgI	CGANNNNNNTGC	4 cut(s)	887, 921, 1436, 1470
BciT130I	CCWGG	1 cut(s)	1494
BclI	TGATCA	3 cut(s)	331, 585, 1089
BcoDI	GTCTC	2 cut(s)	804, 1386
BfaI	CTAG	4 cut(s)	1142, 1208, 1356, 1373
BisI	GCNGC	2 cut(s)	1111, 1304
BlsI	GCNGC	2 cut(s)	1112, 1305
Bme1390I	CCNGG	1 cut(s)	1494
Bme18I	GGWCC	1 cut(s)	669
BmgT120I	GGNCC	1 cut(s)	669
BmiI	GGNNCC	1 cut(s)	407
BmrFI	CCNGG	1 cut(s)	1494
BmrI	ACTGGG	2 cut(s)	431, 464
BmsI	GCATC	5 cut(s)	245, 517, 633, 1321, 1432
BmuI	ACTGGG	2 cut(s)	431, 464
BplI	GAGNNNNNCTC	2 cut(s)	334, 366
Bpu14I	TTCGAA	2 cut(s)	395, 615
BsaAI	YACGTR	2 cut(s)	20, 478
BsaJI	CCNNGG	5 cut(s)	401, 436, 708, 1114, 1384
BsaWI	WCCGGW	1 cut(s)	565
BsaXI	ACNNNNNCTCC	2 cut(s)	1383, 1413
Bsc4I	CCNNNNNNNGG	1 cut(s)	189
Bse1I	ACTGG	4 cut(s)	426, 459, 595, 1432
BseBI	CCWGG	1 cut(s)	1494
BseDI	CCNNGG	5 cut(s)	401, 436, 708, 1114, 1384
BseGI	GGATG	4 cut(s)	156, 1192, 1208, 1474
BseLI	CCNNNNNNNGG	1 cut(s)	189
BseMII	CTCAG	2 cut(s)	546, 1335
BseNI	ACTGG	4 cut(s)	426, 459, 595, 1432
BseRI	GAGGAG	2 cut(s)	1404, 1491
BseXI	GCAGC	2 cut(s)	1122, 1290
BseYI	CCCAGC	1 cut(s)	790
BsgI	GTGCAG	1 cut(s)	500
Bsh1236I	CGCG	2 cut(s)	403, 932
BshFI	GGCC	1 cut(s)	594
BsiSI	CCGG	2 cut(s)	566, 1184
BslI	CCNNNNNNNGG	1 cut(s)	189
BsmAI	GTCTC	2 cut(s)	804, 1386
BsmI	GAATGC	1 cut(s)	1305
BsnI	GGCC	1 cut(s)	594
Bsp119I	TTCGAA	2 cut(s)	395, 615
Bsp143I	GATC	6 cut(s)	331, 585, 827, 993, 1089, 1176
Bsp19I	CCATGG	2 cut(s)	1114, 1384
BspACI	CCGC	4 cut(s)	401, 403, 825, 1031
BspANI	GGCC	1 cut(s)	594
BspCNI	CTCAG	2 cut(s)	547, 1336
BspFNI	CGCG	2 cut(s)	403, 932
BspLI	GGNNCC	1 cut(s)	407
BspPI	GGATC	1 cut(s)	835
BspT104I	TTCGAA	2 cut(s)	395, 615
BsrI	ACTGG	4 cut(s)	426, 459, 595, 1432
BssECI	CCNNGG	5 cut(s)	401, 436, 708, 1114, 1384
BssMI	GATC	6 cut(s)	331, 585, 827, 993, 1089, 1176
BssSI	CACGAG	1 cut(s)	693
BssT1I	CCWWGG	3 cut(s)	708, 1114, 1384
Bst2BI	CACGAG	1 cut(s)	693
Bst2UI	CCWGG	1 cut(s)	1494
Bst4CI	ACNGT	1 cut(s)	658
Bst6I	CTCTTC	3 cut(s)	19, 285, 1128
BstBAI	YACGTR	2 cut(s)	20, 478
BstBI	TTCGAA	2 cut(s)	395, 615
BstC8I	GCNNGC	2 cut(s)	745, 1108
BstDEI	CTNAG	2 cut(s)	555, 1344
BstDSI	CCRYGG	4 cut(s)	401, 436, 1114, 1384
BstF5I	GGATG	4 cut(s)	156, 1192, 1208, 1474
BstFNI	CGCG	2 cut(s)	403, 932
BstHHI	GCGC	2 cut(s)	932, 1447
BstKTI	GATC	6 cut(s)	334, 588, 830, 996, 1092, 1179
BstMAI	GTCTC	2 cut(s)	804, 1386
BstMBI	GATC	6 cut(s)	331, 585, 827, 993, 1089, 1176
BstMWI	GCNNNNNNNGC	3 cut(s)	749, 1340, 1369
BstNI	CCWGG	1 cut(s)	1494
BstSCI	CCNGG	1 cut(s)	1492
BstUI	CGCG	2 cut(s)	403, 932
BstV1I	GCAGC	2 cut(s)	1122, 1290
BstXI	CCANNNNNNTGG	1 cut(s)	798
BsuRI	GGCC	1 cut(s)	594
BtgI	CCRYGG	4 cut(s)	401, 436, 1114, 1384
BtsCI	GGATG	4 cut(s)	156, 1192, 1208, 1474
BtsIMutI	CAGTG	2 cut(s)	588, 1099
Cac8I	GCNNGC	2 cut(s)	745, 1108
CfoI	GCGC	2 cut(s)	932, 1447
Cfr13I	GGNCC	1 cut(s)	669
Cfr42I	CCGCGG	1 cut(s)	404
CseI	GACGC	2 cut(s)	758, 908
Csp6I	GTAC	2 cut(s)	1171, 1425
CspCI	CAANNNNNGTGG	2 cut(s)	661, 696
CviAII	CATG	9 cut(s)	284, 470, 520, 836, 867, 1051, 1087, 1115, 1385
CviQI	GTAC	2 cut(s)	1171, 1425
DdeI	CTNAG	2 cut(s)	555, 1344
DpnI	GATC	6 cut(s)	333, 587, 829, 995, 1091, 1178
DpnII	GATC	6 cut(s)	331, 585, 827, 993, 1089, 1176
DraI	TTTAAA	1 cut(s)	1045
DraIII	CACNNNGTG	1 cut(s)	538
DrdI	GACNNNNNNGTC	1 cut(s)	661
DseDI	GACNNNNNNGTC	1 cut(s)	661
Eam1104I	CTCTTC	3 cut(s)	19, 285, 1128
EarI	CTCTTC	3 cut(s)	19, 285, 1128
Eco130I	CCWWGG	3 cut(s)	708, 1114, 1384
Eco32I	GATATC	1 cut(s)	874
Eco47I	GGWCC	1 cut(s)	669
EcoRII	CCWGG	1 cut(s)	1492
EcoRV	GATATC	1 cut(s)	874
EcoT14I	CCWWGG	3 cut(s)	708, 1114, 1384
ErhI	CCWWGG	3 cut(s)	708, 1114, 1384
FaeI	CATG	9 cut(s)	287, 473, 523, 839, 870, 1054, 1090, 1118, 1388
FatI	CATG	9 cut(s)	283, 469, 519, 835, 866, 1050, 1086, 1114, 1384
FbaI	TGATCA	3 cut(s)	331, 585, 1089
FblI	GTMKAC	1 cut(s)	474
Fnu4HI	GCNGC	2 cut(s)	1111, 1304
FokI	GGATG	4 cut(s)	143, 1199, 1215, 1481
Fsp4HI	GCNGC	2 cut(s)	1111, 1304
FspBI	CTAG	4 cut(s)	1142, 1208, 1356, 1373
FspI	TGCGCA	1 cut(s)	1446
GlaI	GCGC	2 cut(s)	931, 1446
GluI	GCNGC	2 cut(s)	1111, 1304
GsaI	CCCAGC	1 cut(s)	794
HaeIII	GGCC	1 cut(s)	594
HapII	CCGG	2 cut(s)	566, 1184
HgaI	GACGC	2 cut(s)	758, 908
HhaI	GCGC	2 cut(s)	932, 1447
Hin1II	CATG	9 cut(s)	287, 473, 523, 839, 870, 1054, 1090, 1118, 1388
Hin6I	GCGC	2 cut(s)	930, 1445
HinP1I	GCGC	2 cut(s)	930, 1445
HincII	GTYRAC	1 cut(s)	444
HindII	GTYRAC	1 cut(s)	444
HpaII	CCGG	2 cut(s)	566, 1184
HphI	GGTGA	2 cut(s)	19, 172
Hpy166II	GTNNAC	4 cut(s)	444, 475, 984, 1165
Hpy188I	TCNGA	5 cut(s)	88, 210, 331, 654, 1458
Hpy188III	TCNNGA	4 cut(s)	103, 382, 732, 1142
Hpy8I	GTNNAC	4 cut(s)	444, 475, 984, 1165
Hpy99I	CGWCG	2 cut(s)	752, 902
HpyAV	CCTTC	2 cut(s)	212, 957
HpyCH4III	ACNGT	1 cut(s)	658
HpyCH4IV	ACGT	2 cut(s)	19, 477
HpyCH4V	TGCA	6 cut(s)	130, 481, 692, 908, 1007, 1110
HpyF10VI	GCNNNNNNNGC	3 cut(s)	749, 1340, 1369
HpyF3I	CTNAG	2 cut(s)	555, 1344
HpySE526I	ACGT	2 cut(s)	19, 477
Hsp92II	CATG	9 cut(s)	287, 473, 523, 839, 870, 1054, 1090, 1118, 1388
HspAI	GCGC	2 cut(s)	930, 1445
Ksp22I	TGATCA	3 cut(s)	331, 585, 1089
KspI	CCGCGG	1 cut(s)	404
Kzo9I	GATC	6 cut(s)	331, 585, 827, 993, 1089, 1176
LmnI	GCTCC	3 cut(s)	171, 1310, 1369
Lsp1109I	GCAGC	2 cut(s)	1122, 1290
LweI	GCATC	5 cut(s)	245, 517, 633, 1321, 1432
MaeI	CTAG	4 cut(s)	1142, 1208, 1356, 1373
MaeII	ACGT	2 cut(s)	19, 477
MaeIII	GTNAC	6 cut(s)	92, 568, 880, 1081, 1351, 1507
MalI	GATC	6 cut(s)	333, 587, 829, 995, 1091, 1178
MboI	GATC	6 cut(s)	331, 585, 827, 993, 1089, 1176
MluCI	AATT	4 cut(s)	426, 601, 1008, 1337
MlyI	GAGTC	4 cut(s)	309, 352, 426, 439
MmeI	TCCRAC	2 cut(s)	334, 1434
MroXI	GAANNNNTTC	1 cut(s)	1137
MseI	TTAA	3 cut(s)	150, 815, 1044
MslI	CAYNNNNRTG	1 cut(s)	840
MspA1I	CMGCKG	2 cut(s)	403, 794
MspI	CCGG	2 cut(s)	566, 1184
MspR9I	CCNGG	1 cut(s)	1494
Mva1269I	GAATGC	1 cut(s)	1305
MvaI	CCWGG	1 cut(s)	1494
MvnI	CGCG	2 cut(s)	403, 932
MwoI	GCNNNNNNNGC	3 cut(s)	749, 1340, 1369
NcoI	CCATGG	2 cut(s)	1114, 1384
NdeII	GATC	6 cut(s)	331, 585, 827, 993, 1089, 1176
NlaIII	CATG	9 cut(s)	287, 473, 523, 839, 870, 1054, 1090, 1118, 1388
NlaIV	GGNNCC	1 cut(s)	407
NmeAIII	GCCGAG	1 cut(s)	977
NmuCI	GTSAC	2 cut(s)	880, 1081
NsbI	TGCGCA	1 cut(s)	1446
NspV	TTCGAA	2 cut(s)	395, 615
PcsI	WCGNNNNNNNCGW	1 cut(s)	986
PctI	GAATGC	1 cut(s)	1305
PdmI	GAANNNNTTC	1 cut(s)	1137
PfeI	GAWTC	9 cut(s)	24, 106, 140, 397, 464, 649, 952, 970, 1267
PfoI	TCCNGGA	1 cut(s)	1492
PkrI	GCNGC	2 cut(s)	1112, 1305
PleI	GAGTC	4 cut(s)	309, 351, 426, 439
PpsI	GAGTC	4 cut(s)	309, 351, 426, 439
Ppu21I	YACGTR	2 cut(s)	20, 478
Psp6I	CCWGG	1 cut(s)	1492
PspFI	CCCAGC	1 cut(s)	790
PspGI	CCWGG	1 cut(s)	1492
PspN4I	GGNNCC	1 cut(s)	407
PspPI	GGNCC	1 cut(s)	669
PvuII	CAGCTG	1 cut(s)	794
RsaI	GTAC	2 cut(s)	1172, 1426
RsaNI	GTAC	2 cut(s)	1171, 1425
RseI	CAYNNNNRTG	1 cut(s)	840
SacII	CCGCGG	1 cut(s)	404
SaqAI	TTAA	3 cut(s)	150, 815, 1044
SatI	GCNGC	2 cut(s)	1111, 1304
Sau3AI	GATC	6 cut(s)	331, 585, 827, 993, 1089, 1176
Sau96I	GGNCC	1 cut(s)	669
SchI	GAGTC	4 cut(s)	309, 352, 426, 439
ScrFI	CCNGG	1 cut(s)	1494
SfaNI	GCATC	5 cut(s)	245, 517, 633, 1321, 1432
Sfr303I	CCGCGG	1 cut(s)	404
SfuI	TTCGAA	2 cut(s)	395, 615
SgrBI	CCGCGG	1 cut(s)	404
SinI	GGWCC	1 cut(s)	669
SmiMI	CAYNNNNRTG	1 cut(s)	840
Sse9I	AATT	4 cut(s)	426, 601, 1008, 1337
SsiI	CCGC	4 cut(s)	401, 403, 825, 1031
SspMI	CTAG	4 cut(s)	1142, 1208, 1356, 1373
StyD4I	CCNGG	1 cut(s)	1492
StyI	CCWWGG	3 cut(s)	708, 1114, 1384
TaaI	ACNGT	1 cut(s)	658
TaiI	ACGT	2 cut(s)	22, 480
TaqI	TCGA	6 cut(s)	74, 104, 253, 395, 615, 897
TasI	AATT	4 cut(s)	426, 601, 1008, 1337
TatI	WGTACW	1 cut(s)	1170
TfiI	GAWTC	9 cut(s)	24, 106, 140, 397, 464, 649, 952, 970, 1267
Tru1I	TTAA	3 cut(s)	150, 815, 1044
Tru9I	TTAA	3 cut(s)	150, 815, 1044
TscAI	CASTG	2 cut(s)	595, 1099
TseFI	GTSAC	2 cut(s)	880, 1081
TseI	GCWGC	2 cut(s)	1110, 1303
Tsp45I	GTSAC	2 cut(s)	880, 1081
TspDTI	ATGAA	6 cut(s)	153, 194, 272, 561, 824, 934
TspGWI	ACGGA	3 cut(s)	866, 975, 1029
TspRI	CASTG	2 cut(s)	595, 1099
VpaK11BI	GGWCC	1 cut(s)	669
XbaI	TCTAGA	1 cut(s)	1141
XmiI	GTMKAC	1 cut(s)	474
XmnI	GAANNNNTTC	1 cut(s)	1137
XspI	CTAG	4 cut(s)	1142, 1208, 1356, 1373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.