Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0020958

Physical Location & Seq

Genomic Coordinates Reverse (-)

6707989 .. 6708525

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G096600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGAATTTGAGCTCAAGCCCTTTGTTTTTCTTCACCTTCTTCATTGTCTTCAACACCAACCAGATCAAGCAACCAGGGCACTTGGCCTCTATCTTGGTAAAAAACCCAACTAGTCGCTCAGCCACCCAACAAATCCACTCTCACATTCTCACCTCTGGCTTTCTCCTCCATCACTCCATTTCAAATGCCCTTCTTCTCCTCTTCAACACTTTGCTTCGTTGCTCTTCCTTTGGCCCCTTCCCTCGGGAAGCTTTCACTTTCTACAAACACCTCCAACATTTTCCCCTTTCCTTCGACTCCTTCACCTACTCTTTTCTTCTCCACGCCTCCATTACCTTAAAATCCAACAACCCAGGTAACCAAATCCATGCCCTCACTCACAAACTCGGTTTCCATTTCCATGTCTATGTTCAAACTGCCTTGCTTAATATGTATGTTGCTTGTGGCTCTTTGCTCCTTGCTCTCCACGTGTTCTACGAAATGCCTGATTGGAATTCTGTCACTTGGAATTTCATGATAATTGAGTTGGTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0022626 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

179

Amino Acids

20.35

Weight (kDa)

9.03

Isoelectric Point (pI)

42.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09220
malus_domestica	MD02G1261700.v1.1
prunus_persica	Prupe.6G096600_v2.0.a1 Prupe.6G097400_v2.0.a1
pyrus_communis	pycom02g22380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	3 cut(s)	4, 493, 508
AcvI	CACGTG	1 cut(s)	469
AfiI	CCNNNNNNNGG	1 cut(s)	243
AflIII	ACRYGT	1 cut(s)	468
AgsI	TTSAA	4 cut(s)	52, 183, 205, 413
AhlI	ACTAGT	1 cut(s)	110
AjnI	CCWGG	2 cut(s)	73, 352
AluBI	AGCT	2 cut(s)	12, 251
AluI	AGCT	2 cut(s)	12, 251
Alw21I	GWGCWC	1 cut(s)	14
Ama87I	CYCGRG	1 cut(s)	243
AoxI	GGCC	2 cut(s)	84, 232
ApoI	RAATTY	3 cut(s)	4, 493, 508
AspS9I	GGNCC	1 cut(s)	233
AsuHPI	GGTGA	3 cut(s)	25, 142, 295
AvaI	CYCGRG	1 cut(s)	243
BaeGI	GKGCMC	1 cut(s)	81
BanII	GRGCYC	1 cut(s)	14
BbrPI	CACGTG	1 cut(s)	469
BbsI	GAAGAC	1 cut(s)	40
Bbv12I	GWGCWC	1 cut(s)	14
BccI	CCATC	1 cut(s)	177
BciT130I	CCWGG	2 cut(s)	75, 354
BcuI	ACTAGT	1 cut(s)	110
BfaI	CTAG	1 cut(s)	111
BlpI	GCTNAGC	1 cut(s)	118
Bme1390I	CCNGG	2 cut(s)	75, 354
BmeT110I	CYCGRG	1 cut(s)	243
BmgT120I	GGNCC	1 cut(s)	233
BmiI	GGNNCC	1 cut(s)	235
BmrFI	CCNGG	2 cut(s)	75, 354
BpiI	GAAGAC	1 cut(s)	40
Bpu1102I	GCTNAGC	1 cut(s)	118
BsaAI	YACGTR	1 cut(s)	469
BsaJI	CCNNGG	3 cut(s)	74, 242, 352
Bsc4I	CCNNNNNNNGG	1 cut(s)	243
BseBI	CCWGG	2 cut(s)	75, 354
BseDI	CCNNGG	3 cut(s)	74, 242, 352
BseLI	CCNNNNNNNGG	1 cut(s)	243
BseMII	CTCAG	1 cut(s)	132
BseRI	GAGGAG	2 cut(s)	155, 188
BseSI	GKGCMC	1 cut(s)	81
BshFI	GGCC	2 cut(s)	86, 234
BsiHKAI	GWGCWC	1 cut(s)	14
BsiHKCI	CYCGRG	1 cut(s)	243
BslI	CCNNNNNNNGG	1 cut(s)	243
BsnI	GGCC	2 cut(s)	86, 234
BsoBI	CYCGRG	1 cut(s)	243
Bsp1286I	GDGCHC	2 cut(s)	14, 81
Bsp143I	GATC	1 cut(s)	63
Bsp1720I	GCTNAGC	1 cut(s)	118
BspANI	GGCC	2 cut(s)	86, 234
BspCNI	CTCAG	1 cut(s)	131
BspHI	TCATGA	1 cut(s)	513
BspLI	GGNNCC	1 cut(s)	235
BspQI	GCTCTTC	1 cut(s)	229
BssECI	CCNNGG	3 cut(s)	74, 242, 352
BssMI	GATC	1 cut(s)	63
Bst2UI	CCWGG	2 cut(s)	75, 354
Bst6I	CTCTTC	2 cut(s)	206, 229
BstBAI	YACGTR	1 cut(s)	469
BstDEI	CTNAG	1 cut(s)	118
BstEII	GGTNACC	1 cut(s)	356
BstKTI	GATC	1 cut(s)	66
BstMBI	GATC	1 cut(s)	63
BstMWI	GCNNNNNNNGC	1 cut(s)	76
BstNI	CCWGG	2 cut(s)	75, 354
BstPI	GGTNACC	1 cut(s)	356
BstSCI	CCNGG	2 cut(s)	73, 352
BstSLI	GKGCMC	1 cut(s)	81
BstV2I	GAAGAC	1 cut(s)	40
BsuRI	GGCC	2 cut(s)	86, 234
CciI	TCATGA	1 cut(s)	513
Cfr13I	GGNCC	1 cut(s)	233
CviAII	CATG	3 cut(s)	368, 401, 514
CviJI	RGCY	8 cut(s)	12, 18, 86, 122, 159, 234, 251, 447
CviKI_1	RGCY	8 cut(s)	12, 18, 86, 122, 159, 234, 251, 447
DdeI	CTNAG	1 cut(s)	118
DpnI	GATC	1 cut(s)	65
DpnII	GATC	1 cut(s)	63
Eam1104I	CTCTTC	2 cut(s)	206, 229
EarI	CTCTTC	2 cut(s)	206, 229
Ecl136II	GAGCTC	1 cut(s)	12
Eco24I	GRGCYC	1 cut(s)	14
Eco53kI	GAGCTC	1 cut(s)	12
Eco72I	CACGTG	1 cut(s)	469
Eco88I	CYCGRG	1 cut(s)	243
Eco91I	GGTNACC	1 cut(s)	356
EcoICRI	GAGCTC	1 cut(s)	12
EcoO65I	GGTNACC	1 cut(s)	356
EcoRI	GAATTC	1 cut(s)	493
EcoRII	CCWGG	2 cut(s)	73, 352
EcoT38I	GRGCYC	1 cut(s)	14
FaeI	CATG	3 cut(s)	371, 404, 517
FaiI	YATR	6 cut(s)	369, 402, 408, 431, 435, 515
FatI	CATG	3 cut(s)	367, 400, 513
FriOI	GRGCYC	1 cut(s)	14
FspBI	CTAG	1 cut(s)	111
HaeIII	GGCC	2 cut(s)	86, 234
Hin1II	CATG	3 cut(s)	371, 404, 517
HindIII	AAGCTT	1 cut(s)	249
HinfI	GANTC	1 cut(s)	296
HphI	GGTGA	3 cut(s)	25, 142, 295
Hpy188III	TCNNGA	3 cut(s)	245, 514, 534
HpyAV	CCTTC	5 cut(s)	46, 200, 247, 301, 310
HpyCH4IV	ACGT	1 cut(s)	468
HpyF10VI	GCNNNNNNNGC	1 cut(s)	76
HpyF3I	CTNAG	1 cut(s)	118
HpySE526I	ACGT	1 cut(s)	468
Hsp92II	CATG	3 cut(s)	371, 404, 517
Kzo9I	GATC	1 cut(s)	63
LguI	GCTCTTC	1 cut(s)	229
LmnI	GCTCC	1 cut(s)	459
LpnPI	CCDG	7 cut(s)	60, 74, 87, 141, 339, 366, 498
MaeI	CTAG	1 cut(s)	111
MaeII	ACGT	1 cut(s)	468
MaeIII	GTNAC	2 cut(s)	356, 499
MalI	GATC	1 cut(s)	65
MboI	GATC	1 cut(s)	63
MboII	GAAGA	7 cut(s)	22, 31, 40, 185, 193, 216, 308
MhlI	GDGCHC	2 cut(s)	14, 81
MluCI	AATT	4 cut(s)	4, 493, 508, 519
MlyI	GAGTC	1 cut(s)	290
MmeI	TCCRAC	2 cut(s)	298, 369
MnlI	CCTC	8 cut(s)	97, 163, 176, 209, 252, 281, 337, 383
MseI	TTAA	2 cut(s)	338, 426
MslI	CAYNNNNRTG	2 cut(s)	399, 405
MspR9I	CCNGG	2 cut(s)	75, 354
MvaI	CCWGG	2 cut(s)	75, 354
MwoI	GCNNNNNNNGC	1 cut(s)	76
NdeII	GATC	1 cut(s)	63
NlaIII	CATG	3 cut(s)	371, 404, 517
NlaIV	GGNNCC	1 cut(s)	235
NmuCI	GTSAC	1 cut(s)	499
PagI	TCATGA	1 cut(s)	513
PciSI	GCTCTTC	1 cut(s)	229
PcsI	WCGNNNNNNNCGW	1 cut(s)	474
PleI	GAGTC	1 cut(s)	290
PmaCI	CACGTG	1 cut(s)	469
PmlI	CACGTG	1 cut(s)	469
PpsI	GAGTC	1 cut(s)	290
Ppu21I	YACGTR	1 cut(s)	469
Psp124BI	GAGCTC	1 cut(s)	14
Psp6I	CCWGG	2 cut(s)	73, 352
PspCI	CACGTG	1 cut(s)	469
PspEI	GGTNACC	1 cut(s)	356
PspGI	CCWGG	2 cut(s)	73, 352
PspN4I	GGNNCC	1 cut(s)	235
PspPI	GGNCC	1 cut(s)	233
RseI	CAYNNNNRTG	2 cut(s)	399, 405
SacI	GAGCTC	1 cut(s)	14
SapI	GCTCTTC	1 cut(s)	229
SaqAI	TTAA	2 cut(s)	338, 426
Sau3AI	GATC	1 cut(s)	63
Sau96I	GGNCC	1 cut(s)	233
SchI	GAGTC	1 cut(s)	290
ScrFI	CCNGG	2 cut(s)	75, 354
SduI	GDGCHC	2 cut(s)	14, 81
SetI	ASST	9 cut(s)	14, 38, 155, 253, 273, 308, 338, 358, 471
SmiMI	CAYNNNNRTG	2 cut(s)	399, 405
SmlI	CTYRAG	1 cut(s)	13
SmoI	CTYRAG	1 cut(s)	13
SpeI	ACTAGT	1 cut(s)	110
Sse9I	AATT	4 cut(s)	4, 493, 508, 519
SspMI	CTAG	1 cut(s)	111
SstI	GAGCTC	1 cut(s)	14
StyD4I	CCNGG	2 cut(s)	73, 352
TaiI	ACGT	1 cut(s)	471
TaqI	TCGA	1 cut(s)	294
TasI	AATT	4 cut(s)	4, 493, 508, 519
Tru1I	TTAA	2 cut(s)	338, 426
Tru9I	TTAA	2 cut(s)	338, 426
TseFI	GTSAC	1 cut(s)	499
Tsp45I	GTSAC	1 cut(s)	499
TspDTI	ATGAA	3 cut(s)	17, 31, 502
XapI	RAATTY	3 cut(s)	4, 493, 508
XspI	CTAG	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.