Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0020958

Physical Location & Seq

Genomic Coordinates Forward (+)

20495449 .. 20496318

Gene Structure 870 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g22380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGCCGGAGCCTACTGTTGTGTCCTGTACTGCTATTATTGATGTGTACTCGCGGATGAATCAACCCCAGGAGGCTGTGGCTTTGTTTCGGAGAATGGTTGTTGAAGATCTTATTGTACCCACCGGAATTACGCTTCTGGCCATATTCCCAGCGGTTTCTGTTCTTGGGGATCTTAAGATTTGCCAATCACTTCATGCTTATGGTGAGAAGAGAGGGTTTAATGCATCTGACATACGTGTCGCAAATTCCCTTTTGGACTCCTATGCAAAGTGTGGCTGTATAGAGAGTGCATCAAGATTTTTTGACGAGATACCTGCCCAAAGGAAGAATTTGGTGTCATGGACGTCCATAATATCCGGTTTTGCAATGCACGGAATGGGGAAAGAAGCTGTCGAGAATTTTTTAAGTATGGAGAAAGTTGGTTTTAAACCAAATCGAGTGACATTCTTGAGTATTTTCAATGCTTGCAGTCATGGAGGATTAATAGATGAGGGGCTGAACTTCTTTGGGAAGATGATTGACGAGTATGAAATTGCAGTGGATATCAAACACTATGGGTGTTTAATAGATATGCTAGGGAGGGCAGGAAGATTAGAAGAAGCAGAAAAAATGGCTTTGGAGATTCCTTGCAATATTGTTAATGTTGTGATTTGGAGGACGCTTTTGGGTGCTTGTAGCTTTCATGGTAATGTGGAGATGGGCGAGAGGGTGACGGAAAGGGTACTGGAGATGGAGAGAGGATATGGAGGGGACTACGTGCTTATGTCCAACATCTTAGCTGGTGTTGGAAGGTATAGTGATGCCGAGAGAATGAGAAGCTTGCTAGATGAGAGGAACGCCTTCAAACTTCCAGGGCATAGTTTGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0022626 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

290

Amino Acids

32.02

Weight (kDa)

5.48

Isoelectric Point (pI)

39.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	110 - 157	1.4e-10	PPR repeat family
PPR_3	PF13812	110 - 156	6.5e-06	Pentatricopeptide repeat domain
E_motif	PF20431	228 - 289	5.4e-12	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09220
malus_domestica	MD02G1261700.v1.1
prunus_persica	Prupe.6G096600_v2.0.a1 Prupe.6G097400_v2.0.a1
pyrus_communis	pycom02g22380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	236
AatII	GACGTC	1 cut(s)	347
Acc36I	ACCTGC	1 cut(s)	322
AccII	CGCG	1 cut(s)	52
AciI	CCGC	2 cut(s)	52, 152
AclWI	GGATC	1 cut(s)	177
AcoI	YGGCCR	1 cut(s)	138
AcsI	RAATTY	3 cut(s)	244, 328, 397
AcyI	GRCGYC	1 cut(s)	344
AfaI	GTAC	4 cut(s)	28, 47, 117, 723
AflII	CTTAAG	1 cut(s)	173
AflIII	ACRYGT	1 cut(s)	235
AgsI	TTSAA	3 cut(s)	104, 460, 844
AjnI	CCWGG	2 cut(s)	66, 850
AluBI	AGCT	4 cut(s)	389, 678, 779, 819
AluI	AGCT	4 cut(s)	389, 678, 779, 819
AlwI	GGATC	1 cut(s)	177
AoxI	GGCC	1 cut(s)	138
ApoI	RAATTY	3 cut(s)	244, 328, 397
AseI	ATTAAT	1 cut(s)	482
Asp700I	GAANNNNTTC	1 cut(s)	839
AsuHPI	GGTGA	2 cut(s)	215, 721
BalI	TGGCCA	1 cut(s)	140
BccI	CCATC	2 cut(s)	691, 724
BcgI	CGANNNNNNTGC	2 cut(s)	296, 330
BciT130I	CCWGG	2 cut(s)	68, 852
BfaI	CTAG	2 cut(s)	575, 824
BfrI	CTTAAG	1 cut(s)	173
BfuAI	ACCTGC	1 cut(s)	322
BglII	AGATCT	1 cut(s)	106
Bme1390I	CCNGG	2 cut(s)	68, 852
BmiI	GGNNCC	1 cut(s)	9
BmrFI	CCNGG	2 cut(s)	68, 852
BmsI	GCATC	3 cut(s)	233, 299, 790
BpmI	CTGGAG	1 cut(s)	746
BpuEI	CTTGAG	1 cut(s)	469
BsaAI	YACGTR	2 cut(s)	236, 757
BsaHI	GRCGYC	1 cut(s)	344
BsaJI	CCNNGG	2 cut(s)	66, 851
BsaWI	WCCGGW	2 cut(s)	122, 356
Bse1I	ACTGG	1 cut(s)	729
Bse3DI	GCAATG	1 cut(s)	372
BseBI	CCWGG	2 cut(s)	68, 852
BseDI	CCNNGG	2 cut(s)	66, 851
BseGI	GGATG	1 cut(s)	60
BseMI	GCAATG	1 cut(s)	372
BseNI	ACTGG	1 cut(s)	729
BseYI	CCCAGC	1 cut(s)	148
Bsh1236I	CGCG	1 cut(s)	52
BshFI	GGCC	1 cut(s)	140
BsiSI	CCGG	3 cut(s)	5, 123, 357
BslFI	GGGAC	1 cut(s)	764
BsmFI	GGGAC	1 cut(s)	764
BsnI	GGCC	1 cut(s)	140
Bsp143I	GATC	2 cut(s)	106, 169
BspACI	CCGC	2 cut(s)	52, 152
BspANI	GGCC	1 cut(s)	140
BspFNI	CGCG	1 cut(s)	52
BspLI	GGNNCC	1 cut(s)	9
BspMI	ACCTGC	1 cut(s)	322
BspPI	GGATC	1 cut(s)	177
BspTI	CTTAAG	1 cut(s)	173
BsrDI	GCAATG	1 cut(s)	372
BsrI	ACTGG	1 cut(s)	729
BssECI	CCNNGG	2 cut(s)	66, 851
BssMI	GATC	2 cut(s)	106, 169
BssNI	GRCGYC	1 cut(s)	344
Bst2UI	CCWGG	2 cut(s)	68, 852
Bst4CI	ACNGT	1 cut(s)	16
Bst6I	CTCTTC	1 cut(s)	203
BstACI	GRCGYC	1 cut(s)	344
BstAFI	CTTAAG	1 cut(s)	173
BstBAI	YACGTR	2 cut(s)	236, 757
BstC8I	GCNNGC	2 cut(s)	466, 821
BstDEI	CTNAG	1 cut(s)	775
BstF5I	GGATG	1 cut(s)	60
BstFNI	CGCG	1 cut(s)	52
BstKTI	GATC	2 cut(s)	109, 172
BstMBI	GATC	2 cut(s)	106, 169
BstNI	CCWGG	2 cut(s)	68, 852
BstSCI	CCNGG	2 cut(s)	66, 850
BstUI	CGCG	1 cut(s)	52
BstX2I	RGATCY	2 cut(s)	106, 169
BstYI	RGATCY	2 cut(s)	106, 169
BsuRI	GGCC	1 cut(s)	140
BtsCI	GGATG	1 cut(s)	60
BtsI	GCAGTG	1 cut(s)	543
BtsIMutI	CAGTG	1 cut(s)	543
BveI	ACCTGC	1 cut(s)	322
Cac8I	GCNNGC	2 cut(s)	466, 821
CseI	GACGC	1 cut(s)	667
Csp6I	GTAC	4 cut(s)	27, 46, 116, 722
CviAII	CATG	4 cut(s)	194, 339, 473, 683
CviQI	GTAC	4 cut(s)	27, 46, 116, 722
DdeI	CTNAG	1 cut(s)	775
DpnI	GATC	2 cut(s)	108, 171
DpnII	GATC	2 cut(s)	106, 169
DraI	TTTAAA	1 cut(s)	427
DrdI	GACNNNNNNGTC	1 cut(s)	236
DseDI	GACNNNNNNGTC	1 cut(s)	236
EaeI	YGGCCR	1 cut(s)	138
Eam1104I	CTCTTC	1 cut(s)	203
EarI	CTCTTC	1 cut(s)	203
Eco32I	GATATC	1 cut(s)	544
EcoRII	CCWGG	2 cut(s)	66, 850
EcoRV	GATATC	1 cut(s)	544
EcoT22I	ATGCAT	1 cut(s)	226
FaeI	CATG	4 cut(s)	197, 342, 476, 686
FaqI	GGGAC	1 cut(s)	764
FatI	CATG	4 cut(s)	193, 338, 472, 682
FokI	GGATG	1 cut(s)	67
FspBI	CTAG	2 cut(s)	575, 824
GsaI	CCCAGC	1 cut(s)	152
GsuI	CTGGAG	1 cut(s)	746
HaeIII	GGCC	1 cut(s)	140
HapII	CCGG	3 cut(s)	5, 123, 357
HgaI	GACGC	1 cut(s)	667
Hin1I	GRCGYC	1 cut(s)	344
Hin1II	CATG	4 cut(s)	197, 342, 476, 686
HindIII	AAGCTT	1 cut(s)	817
HinfI	GANTC	3 cut(s)	58, 257, 622
HpaII	CCGG	3 cut(s)	5, 123, 357
HphI	GGTGA	2 cut(s)	215, 721
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	2 cut(s)	90, 229
Hpy188III	TCNNGA	3 cut(s)	294, 394, 448
Hpy8I	GTNNAC	1 cut(s)	46
HpyAV	CCTTC	2 cut(s)	783, 850
HpyCH4III	ACNGT	1 cut(s)	16
HpyCH4IV	ACGT	3 cut(s)	235, 344, 756
HpyCH4V	TGCA	8 cut(s)	224, 266, 290, 365, 370, 468, 536, 630
HpyF3I	CTNAG	1 cut(s)	775
HpySE526I	ACGT	3 cut(s)	235, 344, 756
Hsp92I	GRCGYC	1 cut(s)	344
Hsp92II	CATG	4 cut(s)	197, 342, 476, 686
Kzo9I	GATC	2 cut(s)	106, 169
LmnI	GCTCC	1 cut(s)	7
LweI	GCATC	3 cut(s)	233, 299, 790
MaeI	CTAG	2 cut(s)	575, 824
MaeII	ACGT	3 cut(s)	235, 344, 756
MaeIII	GTNAC	2 cut(s)	439, 709
MalI	GATC	2 cut(s)	108, 171
MboI	GATC	2 cut(s)	106, 169
MboII	GAAGA	6 cut(s)	116, 220, 337, 523, 600, 608
MflI	RGATCY	2 cut(s)	106, 169
MlsI	TGGCCA	1 cut(s)	140
MluCI	AATT	5 cut(s)	126, 244, 328, 397, 531
MluNI	TGGCCA	1 cut(s)	140
MlyI	GAGTC	1 cut(s)	251
MmeI	TCCRAC	2 cut(s)	766, 792
Mox20I	TGGCCA	1 cut(s)	140
Mph1103I	ATGCAT	1 cut(s)	226
MroXI	GAANNNNTTC	1 cut(s)	839
MscI	TGGCCA	1 cut(s)	140
MseI	TTAA	7 cut(s)	174, 219, 404, 426, 482, 563, 639
MslI	CAYNNNNRTG	2 cut(s)	198, 687
Msp20I	TGGCCA	1 cut(s)	140
MspA1I	CMGCKG	1 cut(s)	152
MspCI	CTTAAG	1 cut(s)	173
MspI	CCGG	3 cut(s)	5, 123, 357
MspR9I	CCNGG	2 cut(s)	68, 852
MvaI	CCWGG	2 cut(s)	68, 852
MvnI	CGCG	1 cut(s)	52
NdeII	GATC	2 cut(s)	106, 169
NlaIII	CATG	4 cut(s)	197, 342, 476, 686
NlaIV	GGNNCC	1 cut(s)	9
NmeAIII	GCCGAG	1 cut(s)	829
NmuCI	GTSAC	2 cut(s)	439, 709
NsiI	ATGCAT	1 cut(s)	226
PdmI	GAANNNNTTC	1 cut(s)	839
PfeI	GAWTC	2 cut(s)	58, 622
PleI	GAGTC	1 cut(s)	251
PpsI	GAGTC	1 cut(s)	251
Ppu21I	YACGTR	2 cut(s)	236, 757
PshBI	ATTAAT	1 cut(s)	482
Psp6I	CCWGG	2 cut(s)	66, 850
PspFI	CCCAGC	1 cut(s)	148
PspGI	CCWGG	2 cut(s)	66, 850
PspN4I	GGNNCC	1 cut(s)	9
PsuI	RGATCY	2 cut(s)	106, 169
RsaI	GTAC	4 cut(s)	28, 47, 117, 723
RsaNI	GTAC	4 cut(s)	27, 46, 116, 722
RseI	CAYNNNNRTG	2 cut(s)	198, 687
SaqAI	TTAA	7 cut(s)	174, 219, 404, 426, 482, 563, 639
Sau3AI	GATC	2 cut(s)	106, 169
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	2 cut(s)	68, 852
SetI	ASST	9 cut(s)	238, 316, 347, 391, 680, 759, 781, 794, 821
SfaNI	GCATC	3 cut(s)	233, 299, 790
SmiMI	CAYNNNNRTG	2 cut(s)	198, 687
SmlI	CTYRAG	2 cut(s)	173, 448
SmoI	CTYRAG	2 cut(s)	173, 448
Sse9I	AATT	5 cut(s)	126, 244, 328, 397, 531
SsiI	CCGC	2 cut(s)	52, 152
SspI	AATATT	1 cut(s)	634
SspMI	CTAG	2 cut(s)	575, 824
StyD4I	CCNGG	2 cut(s)	66, 850
TaaI	ACNGT	1 cut(s)	16
TaiI	ACGT	3 cut(s)	238, 347, 759
TaqI	TCGA	2 cut(s)	393, 436
TasI	AATT	5 cut(s)	126, 244, 328, 397, 531
TatI	WGTACW	2 cut(s)	26, 45
TfiI	GAWTC	2 cut(s)	58, 622
Tru1I	TTAA	7 cut(s)	174, 219, 404, 426, 482, 563, 639
Tru9I	TTAA	7 cut(s)	174, 219, 404, 426, 482, 563, 639
TscAI	CASTG	1 cut(s)	543
TseFI	GTSAC	2 cut(s)	439, 709
Tsp45I	GTSAC	2 cut(s)	439, 709
TspDTI	ATGAA	4 cut(s)	71, 182, 543, 671
TspGWI	ACGGA	2 cut(s)	387, 728
TspRI	CASTG	1 cut(s)	543
Vha464I	CTTAAG	1 cut(s)	173
VspI	ATTAAT	1 cut(s)	482
XapI	RAATTY	3 cut(s)	244, 328, 397
XmnI	GAANNNNTTC	1 cut(s)	839
XspI	CTAG	2 cut(s)	575, 824
ZraI	GACGTC	1 cut(s)	345
Zsp2I	ATGCAT	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.