Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0020958

Physical Location & Seq

Genomic Coordinates Forward (+)

31609436 .. 31610914

Gene Structure 1479 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1261700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1479 bp

ATGAAACAATTTTTATTTCCAAAATATTGCAAATTTGGTCCAACTACTGCCGGAAGTTGCAAACGTTTCTTACGTTTTTCTTCTTCTTCTTCTTCATTGCCTTCCCACCCAAGGCACTTGGCCTCTCTCTTGCTCAAAAACCCAGCAAGCCACTCAGCCACCCAGCAAATCCACTCTCACATTCTCTCCTCCGGCTTATTCCTTTGTCACAATTTCACCTCCGCTTTTCTCCTCCTCATCAATACTCTCCTCCGCTGCTATTCCTCCGGCGACTTCCCTCACGAAGCTTTCGCCTTCTACAGACATGTCCGGCAGTATTCTCATTCTTTTGACTCCTTCACTTACTTCTTCCTTCTCCACGCCTCCATTGCCTTAAACTCCGTAATCCCAGGTGCCCAAATCCACGCCCTGACTCACAAACTAGGTTTTCATTTCCATGTCTATGTCCAAACTGCCTTGGTTAATATGTACGTTGCTTGTGGCTCTTTGGTACTTGCTCTCAATGTGTTTGATGAAATGCCGCACAGGAATTCTGTCACCTGGAATGTCATGATAACTGGTTTGGCCAAATGGGGTGAGCTTAAATTAGCTCGGTCTATGTTTGATCAGATGCCTGAGCCTACGGTTGTGTCCTGTACTGCTATTATTGATGTGTACTCACGGATGAATCAGCCCCAGGAGGCTGTGGCTTTGTTTCGGAGAATGGTTGTTGAAGATCTTATTGTACCCACTGGAATTACGCTTCTGGCCATATTCCCAGCGGTTTCTGTTCTTGGGGATCTTAAGATTTGCCAATCACTTCATGCTTATGGTGAGAAGAAAGGGTTTAATGCATCTGACATACGTGTTGCAAATTCCCTTTTGGACTCCTATGCAAAGTGCGGCTGTATAGAGAGTGCATCAAGATTTTTTGAGGAGATACCTGCCCAAAGGAAGAATTTGGTGTCATGGACGTCCATAATCTCCGGTTTTGCAATGCACGGAATGGGGAAAGAAGCTGTCGAGAATTTTGTAAGTATGGAGAAAGTTGGTTTCAAACCAAATCGAGTGACATTCTTGAGTATTTTCAATGCTTGCAGTCATGGAGGATTAATAGATGAGGGGCTGAACTTCTTTGGGAAGATGATCGACGAGTATGAAATTGCAGTGGATATCAAACACTATGGATGTTTAATAGATATGCTAGGGAGGGCAGGAAGATTAGAAGAAGCAGAAAAAATGGCTTTGGAGATTCCTTGCAATATTGTTAATGTTGTGATTTGGAGGACGCTTTTGGGTGCTTGTAGCTTTCACGGTAATGTGGAGATGGGCGAGAGGGTGACGAAGAAGGTACTGGAGATGGAGAGAGGATATGGAGGGGACTACGTGCTTATGTCCAACATCTTAGCTGGTGTTGGAAGGTATAGTGATGCCGAGAGAATGAGAAGCTTGCTAGATGAGAGGAACGCCTTCAAACTTCCAGGGCATAGTTTGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0022626 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

493

Amino Acids

54.89

Weight (kDa)

8.34

Isoelectric Point (pI)

40.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR	PF01535	179 - 205	2.9e-06	PPR repeat
PPR_2	PF13041	313 - 360	2.4e-10	PPR repeat family
E_motif	PF20431	431 - 492	1.2e-11	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09220
malus_domestica	MD02G1261700.v1.1
prunus_persica	Prupe.6G096600_v2.0.a1 Prupe.6G097400_v2.0.a1
pyrus_communis	pycom02g22380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	956
Acc36I	ACCTGC	1 cut(s)	931
AccB1I	GGYRCC	1 cut(s)	392
AciI	CCGC	5 cut(s)	222, 253, 521, 761, 882
AclI	AACGTT	1 cut(s)	64
AclWI	GGATC	1 cut(s)	786
AcoI	YGGCCR	2 cut(s)	564, 747
AcsI	RAATTY	5 cut(s)	32, 529, 853, 937, 1006
AcyI	GRCGYC	1 cut(s)	953
AfaI	GTAC	6 cut(s)	470, 492, 637, 656, 726, 1332
AfiI	CCNNNNNNNGG	1 cut(s)	111
AflII	CTTAAG	1 cut(s)	782
AflIII	ACRYGT	2 cut(s)	304, 844
AgsI	TTSAA	4 cut(s)	713, 1036, 1069, 1453
AjnI	CCWGG	4 cut(s)	388, 539, 675, 1459
AluBI	AGCT	7 cut(s)	287, 580, 590, 998, 1287, 1388, 1428
AluI	AGCT	7 cut(s)	287, 580, 590, 998, 1287, 1388, 1428
AlwI	GGATC	1 cut(s)	786
AoxI	GGCC	3 cut(s)	120, 564, 747
ApeKI	GCWGC	1 cut(s)	255
ApoI	RAATTY	5 cut(s)	32, 529, 853, 937, 1006
AseI	ATTAAT	1 cut(s)	1091
Asp700I	GAANNNNTTC	1 cut(s)	1448
AspS9I	GGNCC	1 cut(s)	38
AsuHPI	GGTGA	5 cut(s)	208, 529, 587, 824, 1330
AvaII	GGWCC	1 cut(s)	38
BaeGI	GKGCMC	1 cut(s)	397
BalI	TGGCCA	2 cut(s)	566, 749
BanI	GGYRCC	1 cut(s)	392
BbvI	GCAGC	1 cut(s)	242
BccI	CCATC	2 cut(s)	1300, 1333
BciT130I	CCWGG	4 cut(s)	390, 541, 677, 1461
BclI	TGATCA	1 cut(s)	604
BfaI	CTAG	3 cut(s)	422, 1184, 1433
BfmI	CTRYAG	1 cut(s)	298
BfrI	CTTAAG	1 cut(s)	782
BfuAI	ACCTGC	1 cut(s)	931
BglII	AGATCT	1 cut(s)	715
BisI	GCNGC	3 cut(s)	256, 521, 883
BlsI	GCNGC	3 cut(s)	257, 522, 884
Bme1390I	CCNGG	4 cut(s)	390, 541, 677, 1461
Bme18I	GGWCC	1 cut(s)	38
BmgT120I	GGNCC	1 cut(s)	38
BmiI	GGNNCC	1 cut(s)	394
BmrFI	CCNGG	4 cut(s)	390, 541, 677, 1461
BmsI	GCATC	4 cut(s)	600, 842, 908, 1399
BpmI	CTGGAG	1 cut(s)	1355
Bpu10I	CCTNAGC	1 cut(s)	615
BpuEI	CTTGAG	1 cut(s)	1078
BsaAI	YACGTR	2 cut(s)	845, 1366
BsaHI	GRCGYC	1 cut(s)	953
BsaJI	CCNNGG	5 cut(s)	110, 388, 456, 675, 1460
BsaWI	WCCGGW	1 cut(s)	965
BsaXI	ACNNNNNCTCC	2 cut(s)	170, 200
Bsc4I	CCNNNNNNNGG	1 cut(s)	111
Bse1I	ACTGG	3 cut(s)	562, 736, 1338
Bse3DI	GCAATG	3 cut(s)	95, 366, 981
BseBI	CCWGG	4 cut(s)	390, 541, 677, 1461
BseDI	CCNNGG	5 cut(s)	110, 388, 456, 675, 1460
BseGI	GGATG	2 cut(s)	669, 1172
BseLI	CCNNNNNNNGG	1 cut(s)	111
BseMI	GCAATG	3 cut(s)	95, 366, 981
BseMII	CTCAG	2 cut(s)	168, 606
BseNI	ACTGG	3 cut(s)	562, 736, 1338
BseRI	GAGGAG	5 cut(s)	178, 221, 224, 239, 929
BseSI	GKGCMC	1 cut(s)	397
BseXI	GCAGC	1 cut(s)	242
BseYI	CCCAGC	3 cut(s)	142, 162, 757
BshFI	GGCC	3 cut(s)	122, 566, 749
BshNI	GGYRCC	1 cut(s)	392
BsiSI	CCGG	5 cut(s)	51, 192, 267, 310, 966
BslFI	GGGAC	1 cut(s)	1373
BslI	CCNNNNNNNGG	1 cut(s)	111
BsmFI	GGGAC	1 cut(s)	1373
BsnI	GGCC	3 cut(s)	122, 566, 749
Bsp1286I	GDGCHC	1 cut(s)	397
Bsp143I	GATC	4 cut(s)	604, 715, 778, 1125
BspACI	CCGC	5 cut(s)	222, 253, 521, 761, 882
BspANI	GGCC	3 cut(s)	122, 566, 749
BspCNI	CTCAG	2 cut(s)	167, 607
BspHI	TCATGA	1 cut(s)	549
BspLI	GGNNCC	1 cut(s)	394
BspMI	ACCTGC	1 cut(s)	931
BspPI	GGATC	1 cut(s)	786
BspT107I	GGYRCC	1 cut(s)	392
BspTI	CTTAAG	1 cut(s)	782
BsrDI	GCAATG	3 cut(s)	95, 366, 981
BsrI	ACTGG	3 cut(s)	562, 736, 1338
BssECI	CCNNGG	5 cut(s)	110, 388, 456, 675, 1460
BssMI	GATC	4 cut(s)	604, 715, 778, 1125
BssNI	GRCGYC	1 cut(s)	953
BssT1I	CCWWGG	2 cut(s)	110, 456
Bst2UI	CCWGG	4 cut(s)	390, 541, 677, 1461
Bst4CI	ACNGT	2 cut(s)	625, 1295
BstACI	GRCGYC	1 cut(s)	953
BstAFI	CTTAAG	1 cut(s)	782
BstBAI	YACGTR	2 cut(s)	845, 1366
BstC8I	GCNNGC	3 cut(s)	148, 1075, 1430
BstDEI	CTNAG	3 cut(s)	154, 615, 1384
BstF5I	GGATG	2 cut(s)	669, 1172
BstKTI	GATC	4 cut(s)	607, 718, 781, 1128
BstMBI	GATC	4 cut(s)	604, 715, 778, 1125
BstMWI	GCNNNNNNNGC	1 cut(s)	368
BstNI	CCWGG	4 cut(s)	390, 541, 677, 1461
BstNSI	RCATGY	1 cut(s)	308
BstSCI	CCNGG	4 cut(s)	388, 539, 675, 1459
BstSFI	CTRYAG	1 cut(s)	298
BstSLI	GKGCMC	1 cut(s)	397
BstV1I	GCAGC	1 cut(s)	242
BstX2I	RGATCY	2 cut(s)	715, 778
BstYI	RGATCY	2 cut(s)	715, 778
BsuRI	GGCC	3 cut(s)	122, 566, 749
BtsCI	GGATG	2 cut(s)	669, 1172
BtsI	GCAGTG	1 cut(s)	1152
BtsIMutI	CAGTG	2 cut(s)	729, 1152
BveI	ACCTGC	1 cut(s)	931
Cac8I	GCNNGC	3 cut(s)	148, 1075, 1430
CciI	TCATGA	1 cut(s)	549
Cfr13I	GGNCC	1 cut(s)	38
CseI	GACGC	1 cut(s)	1276
Csp6I	GTAC	6 cut(s)	469, 491, 636, 655, 725, 1331
CviAII	CATG	6 cut(s)	305, 437, 550, 803, 948, 1082
CviQI	GTAC	6 cut(s)	469, 491, 636, 655, 725, 1331
DdeI	CTNAG	3 cut(s)	154, 615, 1384
DpnI	GATC	4 cut(s)	606, 717, 780, 1127
DpnII	GATC	4 cut(s)	604, 715, 778, 1125
EaeI	YGGCCR	2 cut(s)	564, 747
Eco130I	CCWWGG	2 cut(s)	110, 456
Eco32I	GATATC	1 cut(s)	1153
Eco47I	GGWCC	1 cut(s)	38
EcoRI	GAATTC	1 cut(s)	529
EcoRII	CCWGG	4 cut(s)	388, 539, 675, 1459
EcoRV	GATATC	1 cut(s)	1153
EcoT14I	CCWWGG	2 cut(s)	110, 456
EcoT22I	ATGCAT	1 cut(s)	835
ErhI	CCWWGG	2 cut(s)	110, 456
FaeI	CATG	6 cut(s)	308, 440, 553, 806, 951, 1085
FaqI	GGGAC	1 cut(s)	1373
FatI	CATG	6 cut(s)	304, 436, 549, 802, 947, 1081
FbaI	TGATCA	1 cut(s)	604
Fnu4HI	GCNGC	3 cut(s)	256, 521, 883
FokI	GGATG	2 cut(s)	676, 1179
Fsp4HI	GCNGC	3 cut(s)	256, 521, 883
FspBI	CTAG	3 cut(s)	422, 1184, 1433
GluI	GCNGC	3 cut(s)	256, 521, 883
GsaI	CCCAGC	3 cut(s)	146, 166, 761
GsuI	CTGGAG	1 cut(s)	1355
HaeIII	GGCC	3 cut(s)	122, 566, 749
HapII	CCGG	5 cut(s)	51, 192, 267, 310, 966
HgaI	GACGC	1 cut(s)	1276
Hin1I	GRCGYC	1 cut(s)	953
Hin1II	CATG	6 cut(s)	308, 440, 553, 806, 951, 1085
HindIII	AAGCTT	2 cut(s)	285, 1426
HinfI	GANTC	5 cut(s)	332, 412, 667, 866, 1231
HpaII	CCGG	5 cut(s)	51, 192, 267, 310, 966
HphI	GGTGA	5 cut(s)	208, 529, 587, 824, 1330
Hpy166II	GTNNAC	1 cut(s)	655
Hpy188I	TCNGA	3 cut(s)	609, 699, 838
Hpy188III	TCNNGA	5 cut(s)	281, 550, 903, 1003, 1057
Hpy8I	GTNNAC	1 cut(s)	655
Hpy99I	CGWCG	1 cut(s)	1133
HpyAV	CCTTC	7 cut(s)	111, 304, 346, 362, 1321, 1392, 1459
HpyCH4III	ACNGT	2 cut(s)	625, 1295
HpyCH4IV	ACGT	6 cut(s)	64, 73, 471, 844, 953, 1365
HpyF10VI	GCNNNNNNNGC	1 cut(s)	368
HpyF3I	CTNAG	3 cut(s)	154, 615, 1384
HpySE526I	ACGT	6 cut(s)	64, 73, 471, 844, 953, 1365
Hsp92I	GRCGYC	1 cut(s)	953
Hsp92II	CATG	6 cut(s)	308, 440, 553, 806, 951, 1085
Ksp22I	TGATCA	1 cut(s)	604
Kzo9I	GATC	4 cut(s)	604, 715, 778, 1125
Lsp1109I	GCAGC	1 cut(s)	242
LweI	GCATC	4 cut(s)	600, 842, 908, 1399
MaeI	CTAG	3 cut(s)	422, 1184, 1433
MaeII	ACGT	6 cut(s)	64, 73, 471, 844, 953, 1365
MaeIII	GTNAC	4 cut(s)	206, 535, 1048, 1318
MalI	GATC	4 cut(s)	606, 717, 780, 1127
MboI	GATC	4 cut(s)	604, 715, 778, 1125
MflI	RGATCY	2 cut(s)	715, 778
MhlI	GDGCHC	1 cut(s)	397
MlsI	TGGCCA	2 cut(s)	566, 749
MluNI	TGGCCA	2 cut(s)	566, 749
MlyI	GAGTC	3 cut(s)	326, 406, 860
MmeI	TCCRAC	3 cut(s)	65, 1375, 1401
Mox20I	TGGCCA	2 cut(s)	566, 749
Mph1103I	ATGCAT	1 cut(s)	835
MroXI	GAANNNNTTC	1 cut(s)	1448
MscI	TGGCCA	2 cut(s)	566, 749
MseI	TTAA	8 cut(s)	374, 462, 582, 783, 828, 1091, 1172, 1248
MslI	CAYNNNNRTG	4 cut(s)	435, 441, 807, 1296
Msp20I	TGGCCA	2 cut(s)	566, 749
MspA1I	CMGCKG	2 cut(s)	255, 761
MspCI	CTTAAG	1 cut(s)	782
MspI	CCGG	5 cut(s)	51, 192, 267, 310, 966
MspR9I	CCNGG	4 cut(s)	390, 541, 677, 1461
MvaI	CCWGG	4 cut(s)	390, 541, 677, 1461
MwoI	GCNNNNNNNGC	1 cut(s)	368
NdeII	GATC	4 cut(s)	604, 715, 778, 1125
NlaIII	CATG	6 cut(s)	308, 440, 553, 806, 951, 1085
NlaIV	GGNNCC	1 cut(s)	394
NmeAIII	GCCGAG	1 cut(s)	1438
NmuCI	GTSAC	4 cut(s)	206, 535, 1048, 1318
NsiI	ATGCAT	1 cut(s)	835
NspI	RCATGY	1 cut(s)	308
PagI	TCATGA	1 cut(s)	549
PciI	ACATGT	1 cut(s)	304
PcsI	WCGNNNNNNNCGW	1 cut(s)	70
PdmI	GAANNNNTTC	1 cut(s)	1448
PfeI	GAWTC	2 cut(s)	667, 1231
PkrI	GCNGC	3 cut(s)	257, 522, 884
PleI	GAGTC	3 cut(s)	326, 406, 860
PpsI	GAGTC	3 cut(s)	326, 406, 860
Ppu21I	YACGTR	2 cut(s)	845, 1366
PscI	ACATGT	1 cut(s)	304
PshBI	ATTAAT	1 cut(s)	1091
Psp1406I	AACGTT	1 cut(s)	64
Psp6I	CCWGG	4 cut(s)	388, 539, 675, 1459
PspFI	CCCAGC	3 cut(s)	142, 162, 757
PspGI	CCWGG	4 cut(s)	388, 539, 675, 1459
PspN4I	GGNNCC	1 cut(s)	394
PspPI	GGNCC	1 cut(s)	38
PsuI	RGATCY	2 cut(s)	715, 778
RsaI	GTAC	6 cut(s)	470, 492, 637, 656, 726, 1332
RsaNI	GTAC	6 cut(s)	469, 491, 636, 655, 725, 1331
RseI	CAYNNNNRTG	4 cut(s)	435, 441, 807, 1296
SaqAI	TTAA	8 cut(s)	374, 462, 582, 783, 828, 1091, 1172, 1248
SatI	GCNGC	3 cut(s)	256, 521, 883
Sau3AI	GATC	4 cut(s)	604, 715, 778, 1125
Sau96I	GGNCC	1 cut(s)	38
SchI	GAGTC	3 cut(s)	326, 406, 860
ScrFI	CCNGG	4 cut(s)	390, 541, 677, 1461
SduI	GDGCHC	1 cut(s)	397
SfaNI	GCATC	4 cut(s)	600, 842, 908, 1399
SfcI	CTRYAG	1 cut(s)	298
SinI	GGWCC	1 cut(s)	38
SmiMI	CAYNNNNRTG	4 cut(s)	435, 441, 807, 1296
SmlI	CTYRAG	2 cut(s)	782, 1057
SmoI	CTYRAG	2 cut(s)	782, 1057
SsiI	CCGC	5 cut(s)	222, 253, 521, 761, 882
SspI	AATATT	2 cut(s)	26, 1243
SspMI	CTAG	3 cut(s)	422, 1184, 1433
StyD4I	CCNGG	4 cut(s)	388, 539, 675, 1459
StyI	CCWWGG	2 cut(s)	110, 456
TaaI	ACNGT	2 cut(s)	625, 1295
TaiI	ACGT	6 cut(s)	67, 76, 474, 847, 956, 1368
TaqI	TCGA	3 cut(s)	1002, 1045, 1128
TaqII	GACCGA	1 cut(s)	582
TatI	WGTACW	2 cut(s)	635, 654
TauI	GCSGC	2 cut(s)	523, 885
TfiI	GAWTC	2 cut(s)	667, 1231
Tru1I	TTAA	8 cut(s)	374, 462, 582, 783, 828, 1091, 1172, 1248
Tru9I	TTAA	8 cut(s)	374, 462, 582, 783, 828, 1091, 1172, 1248
TscAI	CASTG	2 cut(s)	736, 1152
TseFI	GTSAC	4 cut(s)	206, 535, 1048, 1318
TseI	GCWGC	1 cut(s)	255
Tsp45I	GTSAC	4 cut(s)	206, 535, 1048, 1318
TspDTI	ATGAA	7 cut(s)	17, 84, 419, 528, 680, 791, 1152
TspGWI	ACGGA	3 cut(s)	370, 676, 996
TspRI	CASTG	2 cut(s)	736, 1152
Vha464I	CTTAAG	1 cut(s)	782
VpaK11BI	GGWCC	1 cut(s)	38
VspI	ATTAAT	1 cut(s)	1091
XapI	RAATTY	5 cut(s)	32, 529, 853, 937, 1006
XceI	RCATGY	1 cut(s)	308
XmnI	GAANNNNTTC	1 cut(s)	1448
XspI	CTAG	3 cut(s)	422, 1184, 1433
ZraI	GACGTC	1 cut(s)	954
Zsp2I	ATGCAT	1 cut(s)	835

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.