Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0020958

Physical Location & Seq

Genomic Coordinates Reverse (-)

6780975 .. 6783558

Gene Structure 2584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G097400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1491 bp

ATGGCGAGGCTGAGTTCCAAGGGACATTCCCTTCTCTACTTTGTAACTCAAATTCCAACTCTAGCCCTCTGCTTTTCCTCATCTTCTTCATTGTCTTCAGCACCAATCCAGATCAAGCATCCAAGGCACTTGGCCTCTATCTTGCTCAAAAACCCAACAAGTCGCTCAGCCACCCAACAAATCCACTCTCACATTCTCACCTCTGGCTTTCTCCTCCATCACTCCATTTCCACTGCCCATCTTCTCCTCTTCAACACTTTGCTTCGTTGCTATTCCTTTGGCCCCTTCCCTCGTGACGCTTTCACTTTCTATAAACACCTCCAACATTGTTCCCTTTCCTTCGACTCCTTCACCTACTCCTTCCTTCTCCACGCCTCTATTGCCTTAAACTCTACCAACCCAGGTGCCCAAATCCATGCCCTCACTCACAAACTCGGTTTCCATTTCCATGTCTATGTTCAAACTGCCTTGCTTAATATGTATGCCGCATGTGGCTCTTTGCTCCTTGCTCTCCACGTGTTCTACGAAATGCCTGAGAGGAATTCTGTCACTTGGAATGTCATGATAACTAGTTTGGCGAAATGGGGTGAGCTTAAATTGGCTCGGTCTCTCTTTGATCAGATGCCAGCCCCTACTGTTGTGTCCTGTACTGCCATTATTGACGGGTATTCACGTAAAAATCAGCCCCGTGATGCTGTTGCTTTGTTTCGAAGAATGGTTGTTGAAGATCACGTTGAACCTACTGAGGTTACACTTTTGGCCATATTTCCAGCCGTTTCGGTTCTTGGAGCTCTTAAAATTTGTCAATCACTTCATGCTTACGGTGAGAAGAGAGGATTTAATGCATCTGACATACGTGTCACCAATTCCCTATTGGATTCTTATGCAAAATGTGGCTGCATAGATAGTGCATCGAGATTGTTTGAGGAGATACCTGTTGAGAGGAAGAATTTGGTGTCATGGACATCCATAATCTCTGGGTTTGCAATGCATGGAATGGGGAAAGAAGCGGTCGAGTATTTTAATAGTATGGAGAACGTTGGTCTCAAACCAAATCGAGTGACATTCTTGAGTATTTTCAATGCTTGTAGTCATGGACGATTAATTGATGAGGGGCTGAACTTCTTTGGGAAGATGGTCGACGAGTATGAAATCGCACTGGATATCAAGCACTATGGATGCTTAATAGATATGCTAGGGAGGGCAGGGAGATTAGAAGAAGCAGAAAATATGGCTTTGGAGATTCCTTCCAATATCGTTAACGTTGTGATTTGGAGGACGCTGTTGGGTGCTTGTAGCTTTCATGGTAATGTGGAGATGGGTGAGAGGGTGACAAAGAAGATACTGGAGATGGAGAGAGGATATGGCGGTGACTACGTGCTTATGTCCAACATCTTTGCTGGGGTTGGAAGGTTTAGTGATGCCGAGAGAATGAGAAGCTTGCTGGATGAGAGGAATGCCTTCAAACTTCCAGGGCATAGTTTGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0022626 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

497

Amino Acids

55.29

Weight (kDa)

8.23

Isoelectric Point (pI)

37.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09220
malus_domestica	MD02G1261700.v1.1
prunus_persica	Prupe.6G096600_v2.0.a1 Prupe.6G097400_v2.0.a1
pyrus_communis	pycom02g22380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	857
AccB1I	GGYRCC	1 cut(s)	404
AccI	GTMKAC	1 cut(s)	1140
AciI	CCGC	3 cut(s)	486, 1010, 1368
AclI	AACGTT	2 cut(s)	1038, 1263
AcoI	YGGCCR	1 cut(s)	759
AcsI	RAATTY	4 cut(s)	51, 541, 798, 949
AcuI	CTGAAG	1 cut(s)	81
AcvI	CACGTG	1 cut(s)	517
AfaI	GTAC	1 cut(s)	649
AflIII	ACRYGT	2 cut(s)	516, 856
AgsI	TTSAA	6 cut(s)	253, 461, 725, 737, 1081, 1465
AhlI	ACTAGT	1 cut(s)	569
AjnI	CCWGG	2 cut(s)	400, 1471
AluBI	AGCT	4 cut(s)	592, 791, 1299, 1440
AluI	AGCT	4 cut(s)	592, 791, 1299, 1440
Alw21I	GWGCWC	1 cut(s)	793
Alw26I	GTCTC	2 cut(s)	612, 1049
AoxI	GGCC	3 cut(s)	132, 280, 759
ApeKI	GCWGC	1 cut(s)	897
ApoI	RAATTY	4 cut(s)	51, 541, 798, 949
AseI	ATTAAT	1 cut(s)	1103
Asp700I	GAANNNNTTC	1 cut(s)	1460
AspS9I	GGNCC	1 cut(s)	281
AsuHPI	GGTGA	8 cut(s)	190, 343, 599, 836, 853, 1334, 1342, 1382
AsuII	TTCGAA	1 cut(s)	709
BaeGI	GKGCMC	1 cut(s)	409
BalI	TGGCCA	1 cut(s)	761
BanI	GGYRCC	1 cut(s)	404
BanII	GRGCYC	1 cut(s)	793
BauI	CACGAG	1 cut(s)	291
BbrPI	CACGTG	1 cut(s)	517
BbsI	GAAGAC	1 cut(s)	87
Bbv12I	GWGCWC	1 cut(s)	793
BbvI	GCAGC	1 cut(s)	884
BccI	CCATC	5 cut(s)	225, 246, 1129, 1312, 1345
BceAI	ACGGC	1 cut(s)	758
BciT130I	CCWGG	2 cut(s)	402, 1473
BclI	TGATCA	1 cut(s)	616
BcoDI	GTCTC	2 cut(s)	612, 1049
BcuI	ACTAGT	1 cut(s)	569
BfaI	CTAG	3 cut(s)	62, 570, 1196
BisI	GCNGC	2 cut(s)	486, 898
BlpI	GCTNAGC	1 cut(s)	166
BlsI	GCNGC	2 cut(s)	487, 899
Bme1390I	CCNGG	2 cut(s)	402, 1473
BmgT120I	GGNCC	1 cut(s)	281
BmiI	GGNNCC	2 cut(s)	283, 406
BmrFI	CCNGG	2 cut(s)	402, 1473
BmsI	GCATC	7 cut(s)	127, 612, 682, 854, 920, 1169, 1411
BpiI	GAAGAC	1 cut(s)	87
BpmI	CTGGAG	1 cut(s)	1367
Bpu1102I	GCTNAGC	1 cut(s)	166
Bpu14I	TTCGAA	1 cut(s)	709
BpuEI	CTTGAG	1 cut(s)	1090
BsaAI	YACGTR	4 cut(s)	517, 674, 857, 1378
BsaI	GGTCTC	2 cut(s)	612, 1049
BsaJI	CCNNGG	4 cut(s)	18, 122, 400, 1472
Bse1I	ACTGG	2 cut(s)	1164, 1350
Bse3DI	GCAATG	1 cut(s)	993
BseBI	CCWGG	2 cut(s)	402, 1473
BseDI	CCNNGG	4 cut(s)	18, 122, 400, 1472
BseGI	GGATG	4 cut(s)	118, 965, 1184, 1453
BseMI	GCAATG	1 cut(s)	993
BseMII	CTCAG	3 cut(s)	180, 525, 735
BseNI	ACTGG	2 cut(s)	1164, 1350
BseRI	GAGGAG	3 cut(s)	203, 236, 941
BseSI	GKGCMC	1 cut(s)	409
BseXI	GCAGC	1 cut(s)	884
BseYI	CCCAGC	1 cut(s)	1400
Bsh1285I	CGRYCG	1 cut(s)	1014
BshFI	GGCC	3 cut(s)	134, 282, 761
BshNI	GGYRCC	1 cut(s)	404
BsiEI	CGRYCG	1 cut(s)	1014
BsiHKAI	GWGCWC	1 cut(s)	793
BslFI	GGGAC	1 cut(s)	36
BsmAI	GTCTC	2 cut(s)	612, 1049
BsmFI	GGGAC	1 cut(s)	36
BsmI	GAATGC	1 cut(s)	1462
BsnI	GGCC	3 cut(s)	134, 282, 761
Bso31I	GGTCTC	2 cut(s)	612, 1049
Bsp119I	TTCGAA	1 cut(s)	709
Bsp1286I	GDGCHC	2 cut(s)	409, 793
Bsp143I	GATC	3 cut(s)	111, 616, 727
Bsp1720I	GCTNAGC	1 cut(s)	166
BspACI	CCGC	3 cut(s)	486, 1010, 1368
BspANI	GGCC	3 cut(s)	134, 282, 761
BspCNI	CTCAG	3 cut(s)	179, 526, 736
BspHI	TCATGA	1 cut(s)	561
BspLI	GGNNCC	2 cut(s)	283, 406
BspT104I	TTCGAA	1 cut(s)	709
BspT107I	GGYRCC	1 cut(s)	404
BspTNI	GGTCTC	2 cut(s)	612, 1049
BsrDI	GCAATG	1 cut(s)	993
BsrI	ACTGG	2 cut(s)	1164, 1350
BssECI	CCNNGG	4 cut(s)	18, 122, 400, 1472
BssMI	GATC	3 cut(s)	111, 616, 727
BssSI	CACGAG	1 cut(s)	291
BssT1I	CCWWGG	2 cut(s)	18, 122
Bst2BI	CACGAG	1 cut(s)	291
Bst2UI	CCWGG	2 cut(s)	402, 1473
Bst4CI	ACNGT	2 cut(s)	637, 824
Bst6I	CTCTTC	2 cut(s)	254, 824
BstBAI	YACGTR	4 cut(s)	517, 674, 857, 1378
BstBI	TTCGAA	1 cut(s)	709
BstC8I	GCNNGC	2 cut(s)	627, 1442
BstDEI	CTNAG	4 cut(s)	11, 166, 534, 744
BstF5I	GGATG	4 cut(s)	118, 965, 1184, 1453
BstKTI	GATC	3 cut(s)	114, 619, 730
BstMAI	GTCTC	2 cut(s)	612, 1049
BstMBI	GATC	3 cut(s)	111, 616, 727
BstMCI	CGRYCG	1 cut(s)	1014
BstMWI	GCNNNNNNNGC	2 cut(s)	124, 380
BstNI	CCWGG	2 cut(s)	402, 1473
BstNSI	RCATGY	1 cut(s)	492
BstSCI	CCNGG	2 cut(s)	400, 1471
BstSLI	GKGCMC	1 cut(s)	409
BstV1I	GCAGC	1 cut(s)	884
BstV2I	GAAGAC	1 cut(s)	87
BsuRI	GGCC	3 cut(s)	134, 282, 761
BtsCI	GGATG	4 cut(s)	118, 965, 1184, 1453
BtsI	GCAGTG	1 cut(s)	231
BtsIMutI	CAGTG	2 cut(s)	231, 1157
Cac8I	GCNNGC	2 cut(s)	627, 1442
CciI	TCATGA	1 cut(s)	561
Cfr13I	GGNCC	1 cut(s)	281
CseI	GACGC	2 cut(s)	305, 1288
Csp6I	GTAC	1 cut(s)	648
CviAII	CATG	9 cut(s)	416, 449, 489, 562, 815, 960, 992, 1094, 1304
CviQI	GTAC	1 cut(s)	648
DdeI	CTNAG	4 cut(s)	11, 166, 534, 744
DpnI	GATC	3 cut(s)	113, 618, 729
DpnII	GATC	3 cut(s)	111, 616, 727
DrdI	GACNNNNNNGTC	1 cut(s)	857
DseDI	GACNNNNNNGTC	1 cut(s)	857
EaeI	YGGCCR	1 cut(s)	759
Eam1104I	CTCTTC	2 cut(s)	254, 824
EarI	CTCTTC	2 cut(s)	254, 824
Ecl136II	GAGCTC	1 cut(s)	791
Eco130I	CCWWGG	2 cut(s)	18, 122
Eco24I	GRGCYC	1 cut(s)	793
Eco31I	GGTCTC	2 cut(s)	612, 1049
Eco32I	GATATC	1 cut(s)	1165
Eco53kI	GAGCTC	1 cut(s)	791
Eco57I	CTGAAG	1 cut(s)	81
Eco72I	CACGTG	1 cut(s)	517
EcoICRI	GAGCTC	1 cut(s)	791
EcoRI	GAATTC	1 cut(s)	541
EcoRII	CCWGG	2 cut(s)	400, 1471
EcoRV	GATATC	1 cut(s)	1165
EcoT14I	CCWWGG	2 cut(s)	18, 122
EcoT22I	ATGCAT	2 cut(s)	847, 993
EcoT38I	GRGCYC	1 cut(s)	793
ErhI	CCWWGG	2 cut(s)	18, 122
FaeI	CATG	9 cut(s)	419, 452, 492, 565, 818, 963, 995, 1097, 1307
FaqI	GGGAC	1 cut(s)	36
FatI	CATG	9 cut(s)	415, 448, 488, 561, 814, 959, 991, 1093, 1303
FbaI	TGATCA	1 cut(s)	616
FblI	GTMKAC	1 cut(s)	1140
Fnu4HI	GCNGC	2 cut(s)	486, 898
FokI	GGATG	4 cut(s)	105, 952, 1191, 1460
FriOI	GRGCYC	1 cut(s)	793
Fsp4HI	GCNGC	2 cut(s)	486, 898
FspBI	CTAG	3 cut(s)	62, 570, 1196
GluI	GCNGC	2 cut(s)	486, 898
GsaI	CCCAGC	1 cut(s)	1404
GsuI	CTGGAG	1 cut(s)	1367
HaeIII	GGCC	3 cut(s)	134, 282, 761
HgaI	GACGC	2 cut(s)	305, 1288
Hin1II	CATG	9 cut(s)	419, 452, 492, 565, 818, 963, 995, 1097, 1307
HincII	GTYRAC	2 cut(s)	1141, 1261
HindII	GTYRAC	2 cut(s)	1141, 1261
HindIII	AAGCTT	1 cut(s)	1438
HinfI	GANTC	3 cut(s)	344, 878, 1243
HpaI	GTTAAC	1 cut(s)	1261
HphI	GGTGA	8 cut(s)	190, 343, 599, 836, 853, 1334, 1342, 1382
Hpy166II	GTNNAC	2 cut(s)	1141, 1261
Hpy188I	TCNGA	2 cut(s)	621, 850
Hpy188III	TCNNGA	5 cut(s)	109, 293, 562, 915, 1069
Hpy8I	GTNNAC	2 cut(s)	1141, 1261
Hpy99I	CGWCG	1 cut(s)	1145
HpyAV	CCTTC	9 cut(s)	41, 295, 349, 358, 370, 374, 1257, 1404, 1471
HpyCH4III	ACNGT	2 cut(s)	637, 824
HpyCH4IV	ACGT	7 cut(s)	516, 673, 732, 856, 1038, 1263, 1377
HpyCH4V	TGCA	6 cut(s)	845, 887, 900, 911, 986, 991
HpyF10VI	GCNNNNNNNGC	2 cut(s)	124, 380
HpyF3I	CTNAG	4 cut(s)	11, 166, 534, 744
HpySE526I	ACGT	7 cut(s)	516, 673, 732, 856, 1038, 1263, 1377
Hsp92II	CATG	9 cut(s)	419, 452, 492, 565, 818, 963, 995, 1097, 1307
Ksp22I	TGATCA	1 cut(s)	616
KspAI	GTTAAC	1 cut(s)	1261
Kzo9I	GATC	3 cut(s)	111, 616, 727
LmnI	GCTCC	2 cut(s)	507, 788
Lsp1109I	GCAGC	1 cut(s)	884
LweI	GCATC	7 cut(s)	127, 612, 682, 854, 920, 1169, 1411
MaeI	CTAG	3 cut(s)	62, 570, 1196
MaeII	ACGT	7 cut(s)	516, 673, 732, 856, 1038, 1263, 1377
MaeIII	GTNAC	8 cut(s)	43, 293, 547, 748, 859, 1060, 1330, 1370
MalI	GATC	3 cut(s)	113, 618, 729
MboI	GATC	3 cut(s)	111, 616, 727
MhlI	GDGCHC	2 cut(s)	409, 793
MlsI	TGGCCA	1 cut(s)	761
MluCI	AATT	7 cut(s)	51, 541, 596, 798, 865, 949, 1104
MluNI	TGGCCA	1 cut(s)	761
MlyI	GAGTC	1 cut(s)	338
MmeI	TCCRAC	4 cut(s)	80, 346, 1387, 1413
Mox20I	TGGCCA	1 cut(s)	761
Mph1103I	ATGCAT	2 cut(s)	847, 993
MroXI	GAANNNNTTC	1 cut(s)	1460
MscI	TGGCCA	1 cut(s)	761
MseI	TTAA	9 cut(s)	386, 474, 594, 795, 840, 1023, 1103, 1184, 1260
MslI	CAYNNNNRTG	3 cut(s)	447, 453, 1308
Msp20I	TGGCCA	1 cut(s)	761
MspR9I	CCNGG	2 cut(s)	402, 1473
Mva1269I	GAATGC	1 cut(s)	1462
MvaI	CCWGG	2 cut(s)	402, 1473
MwoI	GCNNNNNNNGC	2 cut(s)	124, 380
NdeII	GATC	3 cut(s)	111, 616, 727
NlaIII	CATG	9 cut(s)	419, 452, 492, 565, 818, 963, 995, 1097, 1307
NlaIV	GGNNCC	2 cut(s)	283, 406
NmeAIII	GCCGAG	1 cut(s)	1450
NmuCI	GTSAC	6 cut(s)	293, 547, 859, 1060, 1330, 1370
NsiI	ATGCAT	2 cut(s)	847, 993
NspI	RCATGY	1 cut(s)	492
NspV	TTCGAA	1 cut(s)	709
PagI	TCATGA	1 cut(s)	561
PcsI	WCGNNNNNNNCGW	1 cut(s)	522
PctI	GAATGC	1 cut(s)	1462
PdmI	GAANNNNTTC	1 cut(s)	1460
PfeI	GAWTC	2 cut(s)	878, 1243
PkrI	GCNGC	2 cut(s)	487, 899
PleI	GAGTC	1 cut(s)	338
PmaCI	CACGTG	1 cut(s)	517
PmlI	CACGTG	1 cut(s)	517
PpsI	GAGTC	1 cut(s)	338
Ppu21I	YACGTR	4 cut(s)	517, 674, 857, 1378
PshBI	ATTAAT	1 cut(s)	1103
Psp124BI	GAGCTC	1 cut(s)	793
Psp1406I	AACGTT	2 cut(s)	1038, 1263
Psp6I	CCWGG	2 cut(s)	400, 1471
PspCI	CACGTG	1 cut(s)	517
PspFI	CCCAGC	1 cut(s)	1400
PspGI	CCWGG	2 cut(s)	400, 1471
PspN4I	GGNNCC	2 cut(s)	283, 406
PspPI	GGNCC	1 cut(s)	281
RsaI	GTAC	1 cut(s)	649
RsaNI	GTAC	1 cut(s)	648
RseI	CAYNNNNRTG	3 cut(s)	447, 453, 1308
SacI	GAGCTC	1 cut(s)	793
SalI	GTCGAC	1 cut(s)	1139
SaqAI	TTAA	9 cut(s)	386, 474, 594, 795, 840, 1023, 1103, 1184, 1260
SatI	GCNGC	2 cut(s)	486, 898
Sau3AI	GATC	3 cut(s)	111, 616, 727
Sau96I	GGNCC	1 cut(s)	281
SchI	GAGTC	1 cut(s)	338
ScrFI	CCNGG	2 cut(s)	402, 1473
SduI	GDGCHC	2 cut(s)	409, 793
SfaNI	GCATC	7 cut(s)	127, 612, 682, 854, 920, 1169, 1411
SfuI	TTCGAA	1 cut(s)	709
SmiMI	CAYNNNNRTG	3 cut(s)	447, 453, 1308
SmlI	CTYRAG	1 cut(s)	1069
SmoI	CTYRAG	1 cut(s)	1069
SpeI	ACTAGT	1 cut(s)	569
Sse9I	AATT	7 cut(s)	51, 541, 596, 798, 865, 949, 1104
SsiI	CCGC	3 cut(s)	486, 1010, 1368
SspMI	CTAG	3 cut(s)	62, 570, 1196
SstI	GAGCTC	1 cut(s)	793
StyD4I	CCNGG	2 cut(s)	400, 1471
StyI	CCWWGG	2 cut(s)	18, 122
TaaI	ACNGT	2 cut(s)	637, 824
TaiI	ACGT	7 cut(s)	519, 676, 735, 859, 1041, 1266, 1380
TaqI	TCGA	6 cut(s)	342, 709, 914, 1014, 1057, 1140
TaqII	GACCGA	1 cut(s)	594
TasI	AATT	7 cut(s)	51, 541, 596, 798, 865, 949, 1104
TatI	WGTACW	1 cut(s)	647
TauI	GCSGC	1 cut(s)	488
TfiI	GAWTC	2 cut(s)	878, 1243
Tru1I	TTAA	9 cut(s)	386, 474, 594, 795, 840, 1023, 1103, 1184, 1260
Tru9I	TTAA	9 cut(s)	386, 474, 594, 795, 840, 1023, 1103, 1184, 1260
TscAI	CASTG	2 cut(s)	238, 1164
TseFI	GTSAC	6 cut(s)	293, 547, 859, 1060, 1330, 1370
TseI	GCWGC	1 cut(s)	897
Tsp45I	GTSAC	6 cut(s)	293, 547, 859, 1060, 1330, 1370
TspDTI	ATGAA	4 cut(s)	78, 803, 1164, 1292
TspRI	CASTG	2 cut(s)	238, 1164
VspI	ATTAAT	1 cut(s)	1103
XapI	RAATTY	4 cut(s)	51, 541, 798, 949
XceI	RCATGY	1 cut(s)	492
XcmI	CCANNNNNNNNNTGG	1 cut(s)	871
XmiI	GTMKAC	1 cut(s)	1140
XmnI	GAANNNNTTC	1 cut(s)	1460
XspI	CTAG	3 cut(s)	62, 570, 1196
Zsp2I	ATGCAT	2 cut(s)	847, 993

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.