AT1G09812

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0018315
Physical Location & Seq
Forward (+)
3187442 .. 3188854
1413 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G09812.1

Sequence Viewer

Length: 387 bp
ATGAACAAGTCAAGCTCATGGAGCATATACAGTCCCAGAGAGGGAGATAGTGAAGGGCCATGGAGATCGTCAACGTCGATGAATGCGATCTCATTTGGGTTTGTAGCGACGGCGATACTCATCTCCATGTTCTTGATCATGGCCATATTCGAGCATCTCTTTAGGCCTGAGAATTCTTCATTTGATTCACCACATCAGATCAGACAAAGACAGAGAGATGGGTCCAGTCAGTTCCAGAAACTTGCTGATCAAGCATCCATGGTTCCGGTGAGTACGGTGGTGGATGTATCGGTAGTGATGCCAGGGGAGAAGTTGCCGTCGCACATAGCTTTGCCGGCTCCGTTACCTTGTCGGAGAGAAGGCATTCATTGGCCTCTCCGCCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.31

Weight (kDa)

8.0

Isoelectric Point (pI)

63.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09812 AT1G58007 AT1G58007 AT1G58007 AT1G58007
malus_domestica MD08G1242100.v1.1 MD15G1435800.v1.1
prunus_persica Prupe.1G579500_v2.0.a1
pyrus_communis pycom08g20990 pycom15g38450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 379
AcoI YGGCCR 1 cut(s) 141
AcsI RAATTY 1 cut(s) 172
AfaI GTAC 1 cut(s) 274
AfiI CCNNNNNNNGG 1 cut(s) 41
AjnI CCWGG 1 cut(s) 301
AluBI AGCT 2 cut(s) 15, 329
AluI AGCT 2 cut(s) 15, 329
AoxI GGCC 4 cut(s) 56, 141, 164, 371
ApoI RAATTY 1 cut(s) 172
Asp700I GAANNNNTTC 1 cut(s) 363
AspS9I GGNCC 2 cut(s) 56, 222
AsuHPI GGTGA 2 cut(s) 180, 280
AvaII GGWCC 1 cut(s) 222
BalI TGGCCA 1 cut(s) 143
BccI CCATC 1 cut(s) 212
BceAI ACGGC 2 cut(s) 126, 301
BciT130I CCWGG 1 cut(s) 303
BclI TGATCA 2 cut(s) 135, 247
Bme1390I CCNGG 1 cut(s) 303
Bme18I GGWCC 1 cut(s) 222
BmgT120I GGNCC 2 cut(s) 56, 222
BmiI GGNNCC 3 cut(s) 223, 264, 339
BmrFI CCNGG 1 cut(s) 303
BmsI GCATC 3 cut(s) 163, 263, 288
BsaBI GATNNNNATC 1 cut(s) 119
BsaJI CCNNGG 3 cut(s) 59, 258, 302
BsaWI WCCGGW 1 cut(s) 265
Bsc4I CCNNNNNNNGG 1 cut(s) 41
Bse118I RCCGGY 1 cut(s) 334
Bse1I ACTGG 1 cut(s) 225
Bse8I GATNNNNATC 1 cut(s) 119
BseBI CCWGG 1 cut(s) 303
BseDI CCNNGG 3 cut(s) 59, 258, 302
BseGI GGATG 2 cut(s) 254, 289
BseJI GATNNNNATC 1 cut(s) 119
BseLI CCNNNNNNNGG 1 cut(s) 41
BseMII CTCAG 1 cut(s) 159
BseNI ACTGG 1 cut(s) 225
BshFI GGCC 4 cut(s) 58, 143, 166, 373
BsiSI CCGG 2 cut(s) 266, 335
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 1 cut(s) 41
BsmFI GGGAC 1 cut(s) 18
BsmI GAATGC 2 cut(s) 88, 363
BsnI GGCC 4 cut(s) 58, 143, 166, 373
Bsp143I GATC 5 cut(s) 65, 87, 135, 198, 247
Bsp19I CCATGG 2 cut(s) 59, 258
BspACI CCGC 1 cut(s) 379
BspANI GGCC 4 cut(s) 58, 143, 166, 373
BspCNI CTCAG 1 cut(s) 160
BspLI GGNNCC 3 cut(s) 223, 264, 339
BsrFI RCCGGY 1 cut(s) 334
BsrI ACTGG 1 cut(s) 225
BssAI RCCGGY 1 cut(s) 334
BssECI CCNNGG 3 cut(s) 59, 258, 302
BssMI GATC 5 cut(s) 65, 87, 135, 198, 247
BssT1I CCWWGG 2 cut(s) 59, 258
Bst2UI CCWGG 1 cut(s) 303
Bst4CI ACNGT 2 cut(s) 32, 277
BstC8I GCNNGC 1 cut(s) 336
BstDEI CTNAG 1 cut(s) 168
BstDSI CCRYGG 2 cut(s) 59, 258
BstF5I GGATG 2 cut(s) 254, 289
BstKTI GATC 5 cut(s) 68, 90, 138, 201, 250
BstMBI GATC 5 cut(s) 65, 87, 135, 198, 247
BstMWI GCNNNNNNNGC 3 cut(s) 21, 251, 335
BstNI CCWGG 1 cut(s) 303
BstSCI CCNGG 1 cut(s) 301
BsuRI GGCC 4 cut(s) 58, 143, 166, 373
BtgI CCRYGG 2 cut(s) 59, 258
BtsCI GGATG 2 cut(s) 254, 289
Cac8I GCNNGC 1 cut(s) 336
Cfr10I RCCGGY 1 cut(s) 334
Cfr13I GGNCC 2 cut(s) 56, 222
Csp6I GTAC 1 cut(s) 273
CviAII CATG 5 cut(s) 18, 60, 127, 139, 259
CviJI RGCY 7 cut(s) 15, 58, 143, 166, 329, 338, 373
CviKI_1 RGCY 7 cut(s) 15, 58, 143, 166, 329, 338, 373
CviQI GTAC 1 cut(s) 273
DdeI CTNAG 1 cut(s) 168
DpnI GATC 5 cut(s) 67, 89, 137, 200, 249
DpnII GATC 5 cut(s) 65, 87, 135, 198, 247
EaeI YGGCCR 1 cut(s) 141
EciI GGCGGA 1 cut(s) 368
Eco130I CCWWGG 2 cut(s) 59, 258
Eco147I AGGCCT 1 cut(s) 166
Eco47I GGWCC 1 cut(s) 222
EcoRI GAATTC 1 cut(s) 172
EcoRII CCWGG 1 cut(s) 301
EcoT14I CCWWGG 2 cut(s) 59, 258
ErhI CCWWGG 2 cut(s) 59, 258
FaeI CATG 5 cut(s) 21, 63, 130, 142, 262
FaiI YATR 9 cut(s) 19, 26, 28, 61, 128, 140, 146, 260, 326
FaqI GGGAC 1 cut(s) 18
FatI CATG 5 cut(s) 17, 59, 126, 138, 258
FbaI TGATCA 2 cut(s) 135, 247
FokI GGATG 2 cut(s) 241, 296
HaeIII GGCC 4 cut(s) 58, 143, 166, 373
HapII CCGG 2 cut(s) 266, 335
Hin1II CATG 5 cut(s) 21, 63, 130, 142, 262
HincII GTYRAC 1 cut(s) 72
HindII GTYRAC 1 cut(s) 72
HinfI GANTC 1 cut(s) 185
HpaII CCGG 2 cut(s) 266, 335
HphI GGTGA 2 cut(s) 180, 280
Hpy166II GTNNAC 1 cut(s) 72
Hpy188I TCNGA 3 cut(s) 198, 203, 354
Hpy188III TCNNGA 2 cut(s) 133, 235
Hpy8I GTNNAC 1 cut(s) 72
Hpy99I CGWCG 3 cut(s) 79, 112, 322
HpyAV CCTTC 2 cut(s) 47, 353
HpyCH4III ACNGT 2 cut(s) 32, 277
HpyCH4IV ACGT 1 cut(s) 74
HpyF10VI GCNNNNNNNGC 3 cut(s) 21, 251, 335
HpyF3I CTNAG 1 cut(s) 168
HpySE526I ACGT 1 cut(s) 74
Hsp92II CATG 5 cut(s) 21, 63, 130, 142, 262
KroI GCCGGC 1 cut(s) 334
KroNI GCCGGC 1 cut(s) 336
Ksp22I TGATCA 2 cut(s) 135, 247
Kzo9I GATC 5 cut(s) 65, 87, 135, 198, 247
LmnI GCTCC 2 cut(s) 21, 343
LpnPI CCDG 8 cut(s) 49, 180, 238, 248, 279, 288, 315, 348
LweI GCATC 3 cut(s) 163, 263, 288
MaeII ACGT 1 cut(s) 74
MaeIII GTNAC 1 cut(s) 342
MalI GATC 5 cut(s) 67, 89, 137, 200, 249
MboI GATC 5 cut(s) 65, 87, 135, 198, 247
MboII GAAGA 1 cut(s) 168
MlsI TGGCCA 1 cut(s) 143
MluCI AATT 1 cut(s) 172
MluNI TGGCCA 1 cut(s) 143
MmeI TCCRAC 1 cut(s) 332
MnlI CCTC 2 cut(s) 34, 384
Mox20I TGGCCA 1 cut(s) 143
MroNI GCCGGC 1 cut(s) 334
MroXI GAANNNNTTC 1 cut(s) 363
MscI TGGCCA 1 cut(s) 143
MslI CAYNNNNRTG 1 cut(s) 125
Msp20I TGGCCA 1 cut(s) 143
MspI CCGG 2 cut(s) 266, 335
MspR9I CCNGG 1 cut(s) 303
Mva1269I GAATGC 2 cut(s) 88, 363
MvaI CCWGG 1 cut(s) 303
MwoI GCNNNNNNNGC 3 cut(s) 21, 251, 335
NaeI GCCGGC 1 cut(s) 336
NcoI CCATGG 2 cut(s) 59, 258
NdeII GATC 5 cut(s) 65, 87, 135, 198, 247
NgoMIV GCCGGC 1 cut(s) 334
NlaIII CATG 5 cut(s) 21, 63, 130, 142, 262
NlaIV GGNNCC 3 cut(s) 223, 264, 339
PceI AGGCCT 1 cut(s) 166
PcsI WCGNNNNNNNCGW 2 cut(s) 74, 83
PctI GAATGC 2 cut(s) 88, 363
PdiI GCCGGC 1 cut(s) 336
PdmI GAANNNNTTC 1 cut(s) 363
PfeI GAWTC 1 cut(s) 185
Psp6I CCWGG 1 cut(s) 301
PspGI CCWGG 1 cut(s) 301
PspN4I GGNNCC 3 cut(s) 223, 264, 339
PspPI GGNCC 2 cut(s) 56, 222
RsaI GTAC 1 cut(s) 274
RsaNI GTAC 1 cut(s) 273
RseI CAYNNNNRTG 1 cut(s) 125
Sau3AI GATC 5 cut(s) 65, 87, 135, 198, 247
Sau96I GGNCC 2 cut(s) 56, 222
ScrFI CCNGG 1 cut(s) 303
SetI ASST 4 cut(s) 17, 77, 331, 349
SfaNI GCATC 3 cut(s) 163, 263, 288
SinI GGWCC 1 cut(s) 222
SmiMI CAYNNNNRTG 1 cut(s) 125
Sse9I AATT 1 cut(s) 172
SseBI AGGCCT 1 cut(s) 166
SsiI CCGC 1 cut(s) 379
StuI AGGCCT 1 cut(s) 166
StyD4I CCNGG 1 cut(s) 301
StyI CCWWGG 2 cut(s) 59, 258
TaaI ACNGT 2 cut(s) 32, 277
TaiI ACGT 1 cut(s) 77
TaqI TCGA 2 cut(s) 77, 150
TasI AATT 1 cut(s) 172
TfiI GAWTC 1 cut(s) 185
TspDTI ATGAA 4 cut(s) 17, 95, 168, 356
TspGWI ACGGA 1 cut(s) 330
VpaK11BI GGWCC 1 cut(s) 222
XapI RAATTY 1 cut(s) 172
XmnI GAANNNNTTC 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.