MD15G1435800.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0018315
Physical Location & Seq
Forward (+)
53606851 .. 53608906
2056 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1435800.v1.1.491

Sequence Viewer

Length: 462 bp
ATGAACGAGACTGGTTCTGAAAGACCAAAGCCATGGAACATATACTACACAAGTTCAGACCCTTCTTCTTCTCAATCAGGAATTGATCGACAAGTGCAATGGAAGGGCTCCGGGACATCGAGCATGAGTGCCATTTCTTACGGTTTTGTAGCCACGGCTATCTTGATTTCCATGTTTCTTATCATGGCTATCTTTGAACATTTGTTTAAGCCAAGTCCTAATTCTTTTTCCACGCCTCAAGCTCTCACTCATCATGCATCTCCCGAGTCCGGACATTTTGACAAGCATGGAAGAATTATTCCACAAACAGTTTCAACGTCGTATGCGCCAGATTTCTCAGTAGTGATGCCGGGAGAGCAGTGTCCGACCTACATTGCACAACCAGCTCCTCTGCCGAGGTGCTCCAGGGAAGGGATTTATTGGCCTTCCCATGAACATAATAAATTTGTACTTCCTCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

16.99

Weight (kDa)

7.05

Isoelectric Point (pI)

52.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09812 AT1G58007 AT1G58007 AT1G58007 AT1G58007
malus_domestica MD08G1242100.v1.1 MD15G1435800.v1.1
prunus_persica Prupe.1G579500_v2.0.a1
pyrus_communis pycom08g20990 pycom15g38450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 269
AcsI RAATTY 1 cut(s) 443
AfaI GTAC 1 cut(s) 450
AfiI CCNNNNNNNGG 2 cut(s) 269, 411
AgsI TTSAA 2 cut(s) 197, 315
AjnI CCWGG 1 cut(s) 404
AjuI GAANNNNNNNTTGG 2 cut(s) 205, 237
AluBI AGCT 2 cut(s) 242, 386
AluI AGCT 2 cut(s) 242, 386
Alw21I GWGCWC 1 cut(s) 404
Alw26I GTCTC 1 cut(s) 2
Ama87I CYCGRG 1 cut(s) 263
Aor13HI TCCGGA 1 cut(s) 269
AoxI GGCC 1 cut(s) 422
ApoI RAATTY 1 cut(s) 443
AspLEI GCGC 1 cut(s) 328
AsuC2I CCSGG 2 cut(s) 112, 351
AvaI CYCGRG 1 cut(s) 263
BanII GRGCYC 1 cut(s) 110
Bbv12I GWGCWC 1 cut(s) 404
BceAI ACGGC 1 cut(s) 171
BciT130I CCWGG 1 cut(s) 406
BcnI CCSGG 2 cut(s) 112, 351
BcoDI GTCTC 1 cut(s) 2
Bme1390I CCNGG 3 cut(s) 112, 351, 406
BmeT110I CYCGRG 1 cut(s) 263
BmiI GGNNCC 1 cut(s) 109
BmrFI CCNGG 3 cut(s) 112, 351, 406
BmsI GCATC 2 cut(s) 266, 336
BpmI CTGGAG 1 cut(s) 388
BpuEI CTTGAG 1 cut(s) 222
BpuMI CCSGG 2 cut(s) 112, 351
BsaJI CCNNGG 4 cut(s) 32, 153, 395, 405
BsaWI WCCGGW 1 cut(s) 269
Bsc4I CCNNNNNNNGG 2 cut(s) 269, 411
Bse1I ACTGG 1 cut(s) 16
Bse3DI GCAATG 2 cut(s) 104, 372
BseAI TCCGGA 1 cut(s) 269
BseBI CCWGG 1 cut(s) 406
BseDI CCNNGG 4 cut(s) 32, 153, 395, 405
BseLI CCNNNNNNNGG 2 cut(s) 269, 411
BseMI GCAATG 2 cut(s) 104, 372
BseMII CTCAG 1 cut(s) 351
BseNI ACTGG 1 cut(s) 16
BseRI GAGGAG 1 cut(s) 378
BshFI GGCC 1 cut(s) 424
BsiHKAI GWGCWC 1 cut(s) 404
BsiHKCI CYCGRG 1 cut(s) 263
BsiSI CCGG 3 cut(s) 111, 270, 350
BslFI GGGAC 1 cut(s) 127
BslI CCNNNNNNNGG 2 cut(s) 269, 411
BsmAI GTCTC 1 cut(s) 2
BsmFI GGGAC 1 cut(s) 127
BsnI GGCC 1 cut(s) 424
BsoBI CYCGRG 1 cut(s) 263
Bsp1286I GDGCHC 2 cut(s) 110, 404
Bsp13I TCCGGA 1 cut(s) 269
Bsp143I GATC 1 cut(s) 85
Bsp19I CCATGG 1 cut(s) 32
BspANI GGCC 1 cut(s) 424
BspCNI CTCAG 1 cut(s) 350
BspEI TCCGGA 1 cut(s) 269
BspLI GGNNCC 1 cut(s) 109
BsrDI GCAATG 2 cut(s) 104, 372
BsrI ACTGG 1 cut(s) 16
BssECI CCNNGG 4 cut(s) 32, 153, 395, 405
BssMI GATC 1 cut(s) 85
BssT1I CCWWGG 1 cut(s) 32
Bst2UI CCWGG 1 cut(s) 406
Bst4CI ACNGT 2 cut(s) 143, 310
BstDEI CTNAG 1 cut(s) 337
BstDSI CCRYGG 2 cut(s) 32, 153
BstHHI GCGC 1 cut(s) 328
BstKTI GATC 1 cut(s) 88
BstMAI GTCTC 1 cut(s) 2
BstMBI GATC 1 cut(s) 85
BstMWI GCNNNNNNNGC 2 cut(s) 355, 383
BstNI CCWGG 1 cut(s) 406
BstSCI CCNGG 3 cut(s) 110, 349, 404
BstXI CCANNNNNNTGG 1 cut(s) 33
BsuRI GGCC 1 cut(s) 424
BtgI CCRYGG 2 cut(s) 32, 153
BtsI GCAGTG 1 cut(s) 365
BtsIMutI CAGTG 1 cut(s) 365
CfoI GCGC 1 cut(s) 328
Csp6I GTAC 1 cut(s) 449
CviAII CATG 7 cut(s) 33, 124, 172, 184, 254, 287, 431
CviJI RGCY 9 cut(s) 31, 108, 152, 158, 188, 211, 242, 386, 424
CviKI_1 RGCY 9 cut(s) 31, 108, 152, 158, 188, 211, 242, 386, 424
CviQI GTAC 1 cut(s) 449
DdeI CTNAG 1 cut(s) 337
DpnI GATC 1 cut(s) 87
DpnII GATC 1 cut(s) 85
Eco130I CCWWGG 1 cut(s) 32
Eco24I GRGCYC 1 cut(s) 110
Eco88I CYCGRG 1 cut(s) 263
EcoRII CCWGG 1 cut(s) 404
EcoT14I CCWWGG 1 cut(s) 32
EcoT22I ATGCAT 1 cut(s) 259
EcoT38I GRGCYC 1 cut(s) 110
ErhI CCWWGG 1 cut(s) 32
FaeI CATG 7 cut(s) 36, 127, 175, 187, 257, 290, 434
FaqI GGGAC 1 cut(s) 127
FatI CATG 7 cut(s) 32, 123, 171, 183, 253, 286, 430
FriOI GRGCYC 1 cut(s) 110
GlaI GCGC 1 cut(s) 327
GsuI CTGGAG 1 cut(s) 388
HaeIII GGCC 1 cut(s) 424
HapII CCGG 3 cut(s) 111, 270, 350
HhaI GCGC 1 cut(s) 328
Hin1II CATG 7 cut(s) 36, 127, 175, 187, 257, 290, 434
Hin6I GCGC 1 cut(s) 326
HinP1I GCGC 1 cut(s) 326
HinfI GANTC 1 cut(s) 266
HpaII CCGG 3 cut(s) 111, 270, 350
Hpy188I TCNGA 3 cut(s) 19, 58, 366
Hpy188III TCNNGA 4 cut(s) 78, 163, 263, 270
Hpy99I CGWCG 1 cut(s) 322
HpyAV CCTTC 4 cut(s) 72, 97, 404, 435
HpyCH4III ACNGT 2 cut(s) 143, 310
HpyCH4IV ACGT 1 cut(s) 317
HpyCH4V TGCA 3 cut(s) 97, 257, 377
HpyF10VI GCNNNNNNNGC 2 cut(s) 355, 383
HpyF3I CTNAG 1 cut(s) 337
HpySE526I ACGT 1 cut(s) 317
Hsp92II CATG 7 cut(s) 36, 127, 175, 187, 257, 290, 434
HspAI GCGC 1 cut(s) 326
Kpn2I TCCGGA 1 cut(s) 269
Kzo9I GATC 1 cut(s) 85
LmnI GCTCC 3 cut(s) 113, 391, 407
LpnPI CCDG 8 cut(s) 63, 124, 283, 342, 363, 391, 396, 418
LweI GCATC 2 cut(s) 266, 336
MaeII ACGT 1 cut(s) 317
MalI GATC 1 cut(s) 87
MboI GATC 1 cut(s) 85
MboII GAAGA 3 cut(s) 57, 60, 303
MhlI GDGCHC 2 cut(s) 110, 404
MluCI AATT 4 cut(s) 81, 220, 294, 443
MlyI GAGTC 1 cut(s) 275
MmeI TCCRAC 1 cut(s) 389
MnlI CCTC 3 cut(s) 246, 390, 399
Mph1103I ATGCAT 1 cut(s) 259
MroI TCCGGA 1 cut(s) 269
MseI TTAA 1 cut(s) 207
MspI CCGG 3 cut(s) 111, 270, 350
MspR9I CCNGG 3 cut(s) 112, 351, 406
MvaI CCWGG 1 cut(s) 406
MwoI GCNNNNNNNGC 2 cut(s) 355, 383
NciI CCSGG 2 cut(s) 112, 351
NcoI CCATGG 1 cut(s) 32
NdeII GATC 1 cut(s) 85
NlaIII CATG 7 cut(s) 36, 127, 175, 187, 257, 290, 434
NlaIV GGNNCC 1 cut(s) 109
NmeAIII GCCGAG 1 cut(s) 420
NsiI ATGCAT 1 cut(s) 259
PfoI TCCNGGA 1 cut(s) 110
PleI GAGTC 1 cut(s) 274
PpsI GAGTC 1 cut(s) 274
Psp6I CCWGG 1 cut(s) 404
PspGI CCWGG 1 cut(s) 404
PspN4I GGNNCC 1 cut(s) 109
PsrI GAACNNNNNNTAC 2 cut(s) 29, 61
RsaI GTAC 1 cut(s) 450
RsaNI GTAC 1 cut(s) 449
SaqAI TTAA 1 cut(s) 207
Sau3AI GATC 1 cut(s) 85
SchI GAGTC 1 cut(s) 275
ScrFI CCNGG 3 cut(s) 112, 351, 406
SduI GDGCHC 2 cut(s) 110, 404
SetI ASST 5 cut(s) 244, 320, 371, 388, 401
SfaNI GCATC 2 cut(s) 266, 336
SmlI CTYRAG 1 cut(s) 237
SmoI CTYRAG 1 cut(s) 237
Sse9I AATT 4 cut(s) 81, 220, 294, 443
StyD4I CCNGG 3 cut(s) 110, 349, 404
StyI CCWWGG 1 cut(s) 32
TaaI ACNGT 2 cut(s) 143, 310
TaiI ACGT 1 cut(s) 320
TaqI TCGA 2 cut(s) 88, 119
TasI AATT 4 cut(s) 81, 220, 294, 443
TatI WGTACW 1 cut(s) 448
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TscAI CASTG 1 cut(s) 365
TspDTI ATGAA 2 cut(s) 17, 447
TspRI CASTG 1 cut(s) 365
XapI RAATTY 1 cut(s) 443
Zsp2I ATGCAT 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.