AT1G58007

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
21445821 .. 21447502
1682 bp
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UTR
Exon/CDS
Intron
AT1G58007.2

Sequence Viewer

Length: 162 bp
ATGAACGAATCAAGGTCGATAAGGACATGGAGCATATACAGAACCAAGGATACTTCAGGGTCATCGATGAATGCGATTTCGTTTGGATTTGTGGCGACTGCAATATTGATCTTAATGTTCATCATAATGGCAATTCTTGAACATCTCTTCAGGTTCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

53

Amino Acids

6.15

Weight (kDa)

10.78

Isoelectric Point (pI)

31.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018315)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 2 cut(s) 39, 133
AgsI TTSAA 1 cut(s) 140
BciVI GTATCC 1 cut(s) 43
BfuI GTATCC 1 cut(s) 43
BmiI GGNNCC 1 cut(s) 155
Bsa29I ATCGAT 1 cut(s) 65
BsaJI CCNNGG 1 cut(s) 45
BsaWI WCCGGW 1 cut(s) 156
BseCI ATCGAT 1 cut(s) 65
BseDI CCNNGG 1 cut(s) 45
BshVI ATCGAT 1 cut(s) 65
BsiSI CCGG 1 cut(s) 157
BsmI GAATGC 1 cut(s) 76
Bsp143I GATC 1 cut(s) 108
BspDI ATCGAT 1 cut(s) 65
BspLI GGNNCC 1 cut(s) 155
BssECI CCNNGG 1 cut(s) 45
BssMI GATC 1 cut(s) 108
BssT1I CCWWGG 1 cut(s) 45
Bst6I CTCTTC 1 cut(s) 152
BstKTI GATC 1 cut(s) 111
BstMBI GATC 1 cut(s) 108
Bsu15I ATCGAT 1 cut(s) 65
BsuI GTATCC 1 cut(s) 43
BsuTUI ATCGAT 1 cut(s) 65
ClaI ATCGAT 1 cut(s) 65
CviAII CATG 1 cut(s) 27
DpnI GATC 1 cut(s) 110
DpnII GATC 1 cut(s) 108
Eam1104I CTCTTC 1 cut(s) 152
EarI CTCTTC 1 cut(s) 152
Eco130I CCWWGG 1 cut(s) 45
Eco57I CTGAAG 2 cut(s) 39, 133
EcoT14I CCWWGG 1 cut(s) 45
ErhI CCWWGG 1 cut(s) 45
FaeI CATG 1 cut(s) 30
FaiI YATR 4 cut(s) 28, 35, 37, 125
FatI CATG 1 cut(s) 26
HapII CCGG 1 cut(s) 157
Hin1II CATG 1 cut(s) 30
HinfI GANTC 1 cut(s) 8
HpaII CCGG 1 cut(s) 157
Hpy188III TCNNGA 1 cut(s) 137
HpyCH4V TGCA 1 cut(s) 101
Hsp92II CATG 1 cut(s) 30
Kzo9I GATC 1 cut(s) 108
LmnI GCTCC 1 cut(s) 30
LpnPI CCDG 2 cut(s) 42, 136
MalI GATC 1 cut(s) 110
MboI GATC 1 cut(s) 108
MboII GAAGA 1 cut(s) 139
MluCI AATT 1 cut(s) 132
MseI TTAA 1 cut(s) 113
MslI CAYNNNNRTG 1 cut(s) 125
MspI CCGG 1 cut(s) 157
Mva1269I GAATGC 1 cut(s) 76
NdeII GATC 1 cut(s) 108
NlaIII CATG 1 cut(s) 30
NlaIV GGNNCC 1 cut(s) 155
PcsI WCGNNNNNNNCGW 1 cut(s) 71
PctI GAATGC 1 cut(s) 76
PfeI GAWTC 1 cut(s) 8
PspN4I GGNNCC 1 cut(s) 155
PsrI GAACNNNNNNTAC 2 cut(s) 34, 66
RseI CAYNNNNRTG 1 cut(s) 125
SaqAI TTAA 1 cut(s) 113
Sau3AI GATC 1 cut(s) 108
SetI ASST 2 cut(s) 17, 155
SgeI CNNG 5 cut(s) 24, 39, 58, 69, 149
SmiMI CAYNNNNRTG 1 cut(s) 125
Sse9I AATT 1 cut(s) 132
SspI AATATT 1 cut(s) 105
StyI CCWWGG 1 cut(s) 45
TaqI TCGA 2 cut(s) 17, 65
TasI AATT 1 cut(s) 132
TfiI GAWTC 1 cut(s) 8
Tru1I TTAA 1 cut(s) 113
Tru9I TTAA 1 cut(s) 113
TspDTI ATGAA 3 cut(s) 17, 83, 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.