Prupe.1G579500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0018315
Physical Location & Seq
Forward (+)
47150171 .. 47154520
4350 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G579500.1

Sequence Viewer

Length: 438 bp
ATGAATGAGATTGGTTCTGCAAGAGCAAAACCATGGAACATATATACAAGTTCAGACTCAAGCCCGTCTCAAGCAGGAATTGATCGGCAAGTGCAATGGAAAAGCTCTGGGACATCCATGAATGCCATTTCTTTTGGATTTGTTGCCACAGCTATCTTGATATCTATGTTTCTTATCATGGCCATCTTTGAACATTTGTTCAAGCCAAGTCCTTCCTTTTCCACACCTGAAAGCGCAACTCATGGTTCTCTAGAGTCTGGCACTTTTAAGAAGCATGGAATTCCACAAACTGTTTCGACATCTTATGCACCTGATTTCTCAGTATTGATGCCAGGACAGCAGTATCCTACCTACCTTGCCCAGCCTGCTCCTCTCCCCTCCTGCTCTAGGGAAGGGATTTGTTGGCCTTCCCATGAACATAAATTGGTACTTCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

15.76

Weight (kDa)

6.96

Isoelectric Point (pI)

53.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09812 AT1G58007 AT1G58007 AT1G58007 AT1G58007
malus_domestica MD08G1242100.v1.1 MD15G1435800.v1.1
prunus_persica Prupe.1G579500_v2.0.a1
pyrus_communis pycom08g20990 pycom15g38450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 180
AcsI RAATTY 1 cut(s) 279
AfaI GTAC 1 cut(s) 429
AfiI CCNNNNNNNGG 1 cut(s) 387
AgsI TTSAA 2 cut(s) 191, 202
AjnI CCWGG 1 cut(s) 331
AluBI AGCT 2 cut(s) 105, 152
AluI AGCT 2 cut(s) 105, 152
Alw26I GTCTC 1 cut(s) 72
AoxI GGCC 2 cut(s) 180, 404
ApoI RAATTY 1 cut(s) 279
AspLEI GCGC 1 cut(s) 236
BaeI ACNNNNGTAYC 2 cut(s) 326, 359
BalI TGGCCA 1 cut(s) 182
BccI CCATC 1 cut(s) 191
BciT130I CCWGG 1 cut(s) 333
BciVI GTATCC 1 cut(s) 354
BcoDI GTCTC 1 cut(s) 72
BfaI CTAG 2 cut(s) 251, 387
BfuI GTATCC 1 cut(s) 354
Bme1390I CCNGG 1 cut(s) 333
BmrFI CCNGG 1 cut(s) 333
BmsI GCATC 1 cut(s) 318
BpuEI CTTGAG 2 cut(s) 43, 54
BsaJI CCNNGG 1 cut(s) 32
Bsc4I CCNNNNNNNGG 1 cut(s) 387
Bse3DI GCAATG 1 cut(s) 101
BseBI CCWGG 1 cut(s) 333
BseDI CCNNGG 1 cut(s) 32
BseGI GGATG 1 cut(s) 113
BseLI CCNNNNNNNGG 1 cut(s) 387
BseMI GCAATG 1 cut(s) 101
BseMII CTCAG 1 cut(s) 333
BseRI GAGGAG 1 cut(s) 360
BseYI CCCAGC 1 cut(s) 360
BshFI GGCC 2 cut(s) 182, 406
BslFI GGGAC 1 cut(s) 124
BslI CCNNNNNNNGG 1 cut(s) 387
BsmAI GTCTC 1 cut(s) 72
BsmBI CGTCTC 1 cut(s) 72
BsmFI GGGAC 1 cut(s) 124
BsmI GAATGC 1 cut(s) 127
BsnI GGCC 2 cut(s) 182, 406
Bsp143I GATC 1 cut(s) 82
Bsp19I CCATGG 1 cut(s) 32
BspANI GGCC 2 cut(s) 182, 406
BspCNI CTCAG 1 cut(s) 332
BsrDI GCAATG 1 cut(s) 101
BssECI CCNNGG 1 cut(s) 32
BssMI GATC 1 cut(s) 82
BssT1I CCWWGG 1 cut(s) 32
Bst2UI CCWGG 1 cut(s) 333
Bst4CI ACNGT 1 cut(s) 292
BstC8I GCNNGC 1 cut(s) 366
BstDEI CTNAG 2 cut(s) 319, 435
BstDSI CCRYGG 1 cut(s) 32
BstENI CCTNNNNNAGG 1 cut(s) 385
BstF5I GGATG 1 cut(s) 113
BstHHI GCGC 1 cut(s) 236
BstKTI GATC 1 cut(s) 85
BstMAI GTCTC 1 cut(s) 72
BstMBI GATC 1 cut(s) 82
BstMWI GCNNNNNNNGC 2 cut(s) 337, 365
BstNI CCWGG 1 cut(s) 333
BstSCI CCNGG 1 cut(s) 331
BsuI GTATCC 1 cut(s) 354
BsuRI GGCC 2 cut(s) 182, 406
BtgI CCRYGG 1 cut(s) 32
BtsCI GGATG 1 cut(s) 113
Cac8I GCNNGC 1 cut(s) 366
CfoI GCGC 1 cut(s) 236
Csp6I GTAC 1 cut(s) 428
CviAII CATG 6 cut(s) 33, 118, 178, 242, 275, 413
CviJI RGCY 7 cut(s) 63, 105, 152, 182, 205, 364, 406
CviKI_1 RGCY 7 cut(s) 63, 105, 152, 182, 205, 364, 406
CviQI GTAC 1 cut(s) 428
DdeI CTNAG 2 cut(s) 319, 435
DpnI GATC 1 cut(s) 84
DpnII GATC 1 cut(s) 82
EaeI YGGCCR 1 cut(s) 180
Eco130I CCWWGG 1 cut(s) 32
Eco32I GATATC 1 cut(s) 162
EcoNI CCTNNNNNAGG 1 cut(s) 385
EcoRI GAATTC 1 cut(s) 279
EcoRII CCWGG 1 cut(s) 331
EcoRV GATATC 1 cut(s) 162
EcoT14I CCWWGG 1 cut(s) 32
ErhI CCWWGG 1 cut(s) 32
Esp3I CGTCTC 1 cut(s) 72
FaeI CATG 6 cut(s) 36, 121, 181, 245, 278, 416
FaqI GGGAC 1 cut(s) 124
FatI CATG 6 cut(s) 32, 117, 177, 241, 274, 412
FokI GGATG 1 cut(s) 100
FspBI CTAG 2 cut(s) 251, 387
GlaI GCGC 1 cut(s) 235
GsaI CCCAGC 1 cut(s) 364
HaeIII GGCC 2 cut(s) 182, 406
HhaI GCGC 1 cut(s) 236
Hin1II CATG 6 cut(s) 36, 121, 181, 245, 278, 416
Hin6I GCGC 1 cut(s) 234
HinP1I GCGC 1 cut(s) 234
HinfI GANTC 2 cut(s) 56, 254
Hpy188I TCNGA 1 cut(s) 55
Hpy188III TCNNGA 2 cut(s) 157, 251
HpyAV CCTTC 3 cut(s) 222, 386, 417
HpyCH4III ACNGT 1 cut(s) 292
HpyCH4V TGCA 3 cut(s) 20, 94, 308
HpyF10VI GCNNNNNNNGC 2 cut(s) 337, 365
HpyF3I CTNAG 2 cut(s) 319, 435
Hsp92II CATG 6 cut(s) 36, 121, 181, 245, 278, 416
HspAI GCGC 1 cut(s) 234
Kzo9I GATC 1 cut(s) 82
LmnI GCTCC 1 cut(s) 373
LweI GCATC 1 cut(s) 318
MaeI CTAG 2 cut(s) 251, 387
MalI GATC 1 cut(s) 84
MboI GATC 1 cut(s) 82
MlsI TGGCCA 1 cut(s) 182
MluCI AATT 3 cut(s) 78, 279, 422
MluNI TGGCCA 1 cut(s) 182
MlyI GAGTC 2 cut(s) 50, 263
MnlI CCTC 2 cut(s) 381, 388
Mox20I TGGCCA 1 cut(s) 182
MscI TGGCCA 1 cut(s) 182
MseI TTAA 1 cut(s) 267
Msp20I TGGCCA 1 cut(s) 182
MspR9I CCNGG 1 cut(s) 333
Mva1269I GAATGC 1 cut(s) 127
MvaI CCWGG 1 cut(s) 333
MwoI GCNNNNNNNGC 2 cut(s) 337, 365
NcoI CCATGG 1 cut(s) 32
NdeII GATC 1 cut(s) 82
NlaIII CATG 6 cut(s) 36, 121, 181, 245, 278, 416
PctI GAATGC 1 cut(s) 127
PleI GAGTC 2 cut(s) 50, 262
PpsI GAGTC 2 cut(s) 50, 262
Psp6I CCWGG 1 cut(s) 331
PspFI CCCAGC 1 cut(s) 360
PspGI CCWGG 1 cut(s) 331
RsaI GTAC 1 cut(s) 429
RsaNI GTAC 1 cut(s) 428
SaqAI TTAA 1 cut(s) 267
Sau3AI GATC 1 cut(s) 82
SchI GAGTC 2 cut(s) 50, 263
ScrFI CCNGG 1 cut(s) 333
SetI ASST 6 cut(s) 107, 154, 229, 313, 353, 357
SfaNI GCATC 1 cut(s) 318
SmlI CTYRAG 2 cut(s) 58, 69
SmoI CTYRAG 2 cut(s) 58, 69
Sse9I AATT 3 cut(s) 78, 279, 422
SspMI CTAG 2 cut(s) 251, 387
StyD4I CCNGG 1 cut(s) 331
StyI CCWWGG 1 cut(s) 32
TaaI ACNGT 1 cut(s) 292
TaqI TCGA 1 cut(s) 296
TasI AATT 3 cut(s) 78, 279, 422
Tru1I TTAA 1 cut(s) 267
Tru9I TTAA 1 cut(s) 267
TspDTI ATGAA 3 cut(s) 17, 134, 429
XagI CCTNNNNNAGG 1 cut(s) 385
XapI RAATTY 1 cut(s) 279
XbaI TCTAGA 1 cut(s) 250
XspI CTAG 2 cut(s) 251, 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.