MD08G1242100.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0018315
Physical Location & Seq
Forward (+)
30776750 .. 30778750
2001 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1242100.v1.1.491

Sequence Viewer

Length: 462 bp
ATGAACAAGACTGGTTCGGAAAGGCCGAAGCCATGGAACGGATATACTACAAGTACAGACCCTAGCCCGTCTCAAGCAGGAGGGATCGATCGACAAGTGCAATGGCAAAGCTACGGAACATCATCCATGAGCGCGATTTCTTATGGTTTTGTAGCCACGGCTATCTTGGTTTCCATGTTTCTTATCATGGCCATCTTTGAACATTTGTTTAGGCCAAGTCCTAATCCCTTCTCCACACCTCAATCTCTCCCTCGTGCTTCTCTAGAGTCTGCACATTTCGACAAGCATGGAAGAATTAATCGACAAACTGTTTCGACATTGTGTGCGCCGGATTTCTCAGTAGTGATGCCGGGAGAGCAGTGTCCGACCTACATTGCGCAACGGGCTCCTCTCCCGACGTGCTCCAGGGAAGGGGTGCATTGGCCTTCCCATGAACATAATAAATTTGTACTTCCTCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

16.92

Weight (kDa)

8.54

Isoelectric Point (pI)

52.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09812 AT1G58007 AT1G58007 AT1G58007 AT1G58007
malus_domestica MD08G1242100.v1.1 MD15G1435800.v1.1
prunus_persica Prupe.1G579500_v2.0.a1
pyrus_communis pycom08g20990 pycom15g38450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 378
AccII CGCG 1 cut(s) 134
AclWI GGATC 1 cut(s) 92
AcoI YGGCCR 1 cut(s) 189
AcsI RAATTY 1 cut(s) 443
AfaI GTAC 2 cut(s) 55, 450
AfiI CCNNNNNNNGG 2 cut(s) 38, 411
AgsI TTSAA 1 cut(s) 200
AjiI CACGTC 1 cut(s) 399
AjnI CCWGG 1 cut(s) 404
AluBI AGCT 1 cut(s) 111
AluI AGCT 1 cut(s) 111
Alw21I GWGCWC 1 cut(s) 404
Alw26I GTCTC 1 cut(s) 75
AlwI GGATC 1 cut(s) 92
AoxI GGCC 4 cut(s) 23, 189, 212, 422
ApoI RAATTY 1 cut(s) 443
AseI ATTAAT 1 cut(s) 297
AspLEI GCGC 3 cut(s) 134, 328, 379
AsuC2I CCSGG 1 cut(s) 351
BalI TGGCCA 1 cut(s) 191
BanII GRGCYC 1 cut(s) 388
BauI CACGAG 1 cut(s) 252
Bbv12I GWGCWC 1 cut(s) 404
BccI CCATC 1 cut(s) 200
BceAI ACGGC 1 cut(s) 174
BciT130I CCWGG 1 cut(s) 406
BcnI CCSGG 1 cut(s) 351
BcoDI GTCTC 1 cut(s) 75
BfaI CTAG 2 cut(s) 63, 263
Bme1390I CCNGG 2 cut(s) 351, 406
BmgBI CACGTC 1 cut(s) 399
BmiI GGNNCC 1 cut(s) 387
BmrFI CCNGG 2 cut(s) 351, 406
BmsI GCATC 1 cut(s) 336
BpmI CTGGAG 1 cut(s) 388
BpuEI CTTGAG 1 cut(s) 57
BpuMI CCSGG 1 cut(s) 351
Bsa29I ATCGAT 1 cut(s) 87
BsaJI CCNNGG 3 cut(s) 32, 156, 405
Bsc4I CCNNNNNNNGG 2 cut(s) 38, 411
Bse1I ACTGG 1 cut(s) 16
Bse3DI GCAATG 2 cut(s) 107, 372
BseBI CCWGG 1 cut(s) 406
BseCI ATCGAT 1 cut(s) 87
BseDI CCNNGG 3 cut(s) 32, 156, 405
BseGI GGATG 1 cut(s) 122
BseLI CCNNNNNNNGG 2 cut(s) 38, 411
BseMI GCAATG 2 cut(s) 107, 372
BseMII CTCAG 1 cut(s) 351
BseNI ACTGG 1 cut(s) 16
BseRI GAGGAG 1 cut(s) 378
BsgI GTGCAG 1 cut(s) 255
Bsh1236I CGCG 1 cut(s) 134
Bsh1285I CGRYCG 1 cut(s) 91
BshFI GGCC 4 cut(s) 25, 191, 214, 424
BshVI ATCGAT 1 cut(s) 87
BsiEI CGRYCG 1 cut(s) 91
BsiHKAI GWGCWC 1 cut(s) 404
BsiSI CCGG 2 cut(s) 329, 350
BslI CCNNNNNNNGG 2 cut(s) 38, 411
BsmAI GTCTC 1 cut(s) 75
BsmBI CGTCTC 1 cut(s) 75
BsnI GGCC 4 cut(s) 25, 191, 214, 424
Bsp1286I GDGCHC 2 cut(s) 388, 404
Bsp143I GATC 2 cut(s) 84, 88
Bsp19I CCATGG 1 cut(s) 32
BspANI GGCC 4 cut(s) 25, 191, 214, 424
BspCNI CTCAG 1 cut(s) 350
BspDI ATCGAT 1 cut(s) 87
BspFNI CGCG 1 cut(s) 134
BspLI GGNNCC 1 cut(s) 387
BspPI GGATC 1 cut(s) 92
BsrDI GCAATG 2 cut(s) 107, 372
BsrI ACTGG 1 cut(s) 16
BssECI CCNNGG 3 cut(s) 32, 156, 405
BssMI GATC 2 cut(s) 84, 88
BssSI CACGAG 1 cut(s) 252
BssT1I CCWWGG 1 cut(s) 32
Bst2BI CACGAG 1 cut(s) 252
Bst2UI CCWGG 1 cut(s) 406
Bst4CI ACNGT 1 cut(s) 310
BstDEI CTNAG 2 cut(s) 337, 459
BstDSI CCRYGG 2 cut(s) 32, 156
BstF5I GGATG 1 cut(s) 122
BstFNI CGCG 1 cut(s) 134
BstHHI GCGC 3 cut(s) 134, 328, 379
BstKTI GATC 2 cut(s) 87, 91
BstMAI GTCTC 1 cut(s) 75
BstMBI GATC 2 cut(s) 84, 88
BstMCI CGRYCG 1 cut(s) 91
BstMWI GCNNNNNNNGC 2 cut(s) 355, 383
BstNI CCWGG 1 cut(s) 406
BstSCI CCNGG 2 cut(s) 349, 404
BstUI CGCG 1 cut(s) 134
Bsu15I ATCGAT 1 cut(s) 87
BsuRI GGCC 4 cut(s) 25, 191, 214, 424
BsuTUI ATCGAT 1 cut(s) 87
BtgI CCRYGG 2 cut(s) 32, 156
BtrI CACGTC 1 cut(s) 399
BtsCI GGATG 1 cut(s) 122
BtsI GCAGTG 1 cut(s) 365
BtsIMutI CAGTG 1 cut(s) 365
CfoI GCGC 3 cut(s) 134, 328, 379
ClaI ATCGAT 1 cut(s) 87
Csp6I GTAC 2 cut(s) 54, 449
CviAII CATG 6 cut(s) 33, 127, 175, 187, 287, 431
CviQI GTAC 2 cut(s) 54, 449
DdeI CTNAG 2 cut(s) 337, 459
DpnI GATC 2 cut(s) 86, 90
DpnII GATC 2 cut(s) 84, 88
EaeI YGGCCR 1 cut(s) 189
Eco130I CCWWGG 1 cut(s) 32
Eco24I GRGCYC 1 cut(s) 388
EcoRII CCWGG 1 cut(s) 404
EcoT14I CCWWGG 1 cut(s) 32
EcoT38I GRGCYC 1 cut(s) 388
ErhI CCWWGG 1 cut(s) 32
Esp3I CGTCTC 1 cut(s) 75
FaeI CATG 6 cut(s) 36, 130, 178, 190, 290, 434
FaiI YATR 9 cut(s) 34, 45, 128, 144, 176, 188, 288, 432, 438
FatI CATG 6 cut(s) 32, 126, 174, 186, 286, 430
FokI GGATG 1 cut(s) 109
FriOI GRGCYC 1 cut(s) 388
FspBI CTAG 2 cut(s) 63, 263
FspI TGCGCA 1 cut(s) 378
GlaI GCGC 3 cut(s) 133, 327, 378
GsuI CTGGAG 1 cut(s) 388
HaeIII GGCC 4 cut(s) 25, 191, 214, 424
HapII CCGG 2 cut(s) 329, 350
HhaI GCGC 3 cut(s) 134, 328, 379
Hin1II CATG 6 cut(s) 36, 130, 178, 190, 290, 434
Hin6I GCGC 3 cut(s) 132, 326, 377
HinP1I GCGC 3 cut(s) 132, 326, 377
HinfI GANTC 1 cut(s) 266
HpaII CCGG 2 cut(s) 329, 350
Hpy188I TCNGA 2 cut(s) 19, 366
Hpy188III TCNNGA 2 cut(s) 263, 394
Hpy99I CGWCG 1 cut(s) 400
HpyAV CCTTC 3 cut(s) 238, 404, 435
HpyCH4III ACNGT 1 cut(s) 310
HpyCH4IV ACGT 1 cut(s) 398
HpyCH4V TGCA 3 cut(s) 100, 272, 418
HpyF10VI GCNNNNNNNGC 2 cut(s) 355, 383
HpyF3I CTNAG 2 cut(s) 337, 459
HpySE526I ACGT 1 cut(s) 398
Hsp92II CATG 6 cut(s) 36, 130, 178, 190, 290, 434
HspAI GCGC 3 cut(s) 132, 326, 377
Kzo9I GATC 2 cut(s) 84, 88
LmnI GCTCC 2 cut(s) 391, 407
LpnPI CCDG 5 cut(s) 63, 342, 363, 391, 418
LweI GCATC 1 cut(s) 336
MaeI CTAG 2 cut(s) 63, 263
MaeII ACGT 1 cut(s) 398
MalI GATC 2 cut(s) 86, 90
MboI GATC 2 cut(s) 84, 88
MboII GAAGA 1 cut(s) 303
MhlI GDGCHC 2 cut(s) 388, 404
MlsI TGGCCA 1 cut(s) 191
MluCI AATT 2 cut(s) 294, 443
MluNI TGGCCA 1 cut(s) 191
MlyI GAGTC 1 cut(s) 275
MmeI TCCRAC 1 cut(s) 389
MnlI CCTC 4 cut(s) 74, 249, 261, 399
Mox20I TGGCCA 1 cut(s) 191
MscI TGGCCA 1 cut(s) 191
MseI TTAA 1 cut(s) 297
Msp20I TGGCCA 1 cut(s) 191
MspI CCGG 2 cut(s) 329, 350
MspR9I CCNGG 2 cut(s) 351, 406
MvaI CCWGG 1 cut(s) 406
MvnI CGCG 1 cut(s) 134
MwoI GCNNNNNNNGC 2 cut(s) 355, 383
NciI CCSGG 1 cut(s) 351
NcoI CCATGG 1 cut(s) 32
NdeII GATC 2 cut(s) 84, 88
NlaIII CATG 6 cut(s) 36, 130, 178, 190, 290, 434
NlaIV GGNNCC 1 cut(s) 387
NsbI TGCGCA 1 cut(s) 378
PcsI WCGNNNNNNNCGW 1 cut(s) 23
Ple19I CGATCG 1 cut(s) 91
PleI GAGTC 1 cut(s) 274
PpsI GAGTC 1 cut(s) 274
PshBI ATTAAT 1 cut(s) 297
Psp6I CCWGG 1 cut(s) 404
PspGI CCWGG 1 cut(s) 404
PspN4I GGNNCC 1 cut(s) 387
PvuI CGATCG 1 cut(s) 91
RsaI GTAC 2 cut(s) 55, 450
RsaNI GTAC 2 cut(s) 54, 449
SaqAI TTAA 1 cut(s) 297
Sau3AI GATC 2 cut(s) 84, 88
SchI GAGTC 1 cut(s) 275
ScrFI CCNGG 2 cut(s) 351, 406
SduI GDGCHC 2 cut(s) 388, 404
SetI ASST 4 cut(s) 113, 241, 371, 401
SfaNI GCATC 1 cut(s) 336
SmlI CTYRAG 1 cut(s) 72
SmoI CTYRAG 1 cut(s) 72
Sse9I AATT 2 cut(s) 294, 443
SspMI CTAG 2 cut(s) 63, 263
StyD4I CCNGG 2 cut(s) 349, 404
StyI CCWWGG 1 cut(s) 32
TaaI ACNGT 1 cut(s) 310
TaiI ACGT 1 cut(s) 401
TaqI TCGA 5 cut(s) 87, 91, 279, 301, 314
TasI AATT 2 cut(s) 294, 443
TatI WGTACW 2 cut(s) 53, 448
Tru1I TTAA 1 cut(s) 297
Tru9I TTAA 1 cut(s) 297
TscAI CASTG 1 cut(s) 365
TspDTI ATGAA 2 cut(s) 17, 447
TspGWI ACGGA 2 cut(s) 54, 129
TspRI CASTG 1 cut(s) 365
VspI ATTAAT 1 cut(s) 297
XapI RAATTY 1 cut(s) 443
XbaI TCTAGA 1 cut(s) 262
XcmI CCANNNNNNNNNTGG 1 cut(s) 163
XspI CTAG 2 cut(s) 63, 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.