Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015909

Physical Location & Seq

Genomic Coordinates Forward (+)

3862399 .. 3864074

Gene Structure 1676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G11475.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGATCATCCCTGTTCGTTGCTTTACTTGTGGAAAGGTGATTGGAAACAAATGGGATCAGTATCTTGATCTTCTCCAGCTCGACTACACTGAAGGGGACGCACTTGATGCACTCCAGCTAGTCAGATACTGCTGCAGGCGTATGCTAATGACTCATGTTGATCTGATTGAGAAGCTTCTCAACTACAACACTCTGGAGAAATCAGACAACAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000418 GO:0000419 GO:0000428 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005666 GO:0005730 GO:0005736 GO:0008270 GO:0016591 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0046872 GO:0046914 GO:0055029 GO:0061695 GO:0070013 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05016 ko05169 map00230 map00240 map01100 map03020 map04623 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_N

Protein Analysis

71

Amino Acids

8.31

Weight (kDa)

5.11

Isoelectric Point (pI)

29.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_N	PF01194	2 - 59	3.5e-31	RNA polymerases N / 8 kDa subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11475
fragaria_vesca	FvH4_4g32930 FvH4_4g32930
malus_domestica	MD05G1050000.v1.1 MD10G1057300.v1.1
prunus_persica	Prupe.1G250300_v2.0.a1 Prupe.1G250300_v2.0.a1
pyrus_communis	pycom05g04190 pycom10g04420
rosa_chinensis	RchiOBHm_Chr5g0051151
rosa_multiflora	Rmu_sc0000446.1_g000014
rosa_roxburghii	Rroxscaffold_1G00029300
rosa_rugosa	Rorug05G0266000
rosa_wichuraiana	Rw0G023650 Rw5G031960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	63
AcuI	CTGAAG	1 cut(s)	111
AluBI	AGCT	3 cut(s)	79, 118, 175
AluI	AGCT	3 cut(s)	79, 118, 175
AlwI	GGATC	1 cut(s)	63
AlwNI	CAGNNNCTG	1 cut(s)	129
ApeKI	GCWGC	1 cut(s)	132
AsuHPI	GGTGA	1 cut(s)	49
BbvI	GCAGC	1 cut(s)	119
BclI	TGATCA	1 cut(s)	3
BfaI	CTAG	1 cut(s)	119
BfmI	CTRYAG	1 cut(s)	133
BisI	GCNGC	1 cut(s)	133
BlsI	GCNGC	1 cut(s)	134
BmsI	GCATC	1 cut(s)	97
BpmI	CTGGAG	3 cut(s)	59, 98, 215
BsaBI	GATNNNNATC	1 cut(s)	60
Bse8I	GATNNNNATC	1 cut(s)	60
BseGI	GGATG	1 cut(s)	6
BseJI	GATNNNNATC	1 cut(s)	60
BseXI	GCAGC	1 cut(s)	119
BslFI	GGGAC	1 cut(s)	110
BsmFI	GGGAC	1 cut(s)	110
Bsp143I	GATC	4 cut(s)	3, 55, 67, 160
BspMAI	CTGCAG	1 cut(s)	137
BspPI	GGATC	1 cut(s)	63
BssMI	GATC	4 cut(s)	3, 55, 67, 160
Bst4CI	ACNGT	1 cut(s)	212
BstAPI	GCANNNNNTGC	1 cut(s)	107
BstC8I	GCNNGC	1 cut(s)	137
BstF5I	GGATG	1 cut(s)	6
BstKTI	GATC	4 cut(s)	6, 58, 70, 163
BstMBI	GATC	4 cut(s)	3, 55, 67, 160
BstMWI	GCNNNNNNNGC	1 cut(s)	107
BstSFI	CTRYAG	1 cut(s)	133
BstV1I	GCAGC	1 cut(s)	119
BtsCI	GGATG	1 cut(s)	6
BtsIMutI	CAGTG	1 cut(s)	87
Cac8I	GCNNGC	1 cut(s)	137
CaiI	CAGNNNCTG	1 cut(s)	129
CseI	GACGC	1 cut(s)	107
CviAII	CATG	1 cut(s)	155
CviJI	RGCY	3 cut(s)	79, 118, 175
CviKI_1	RGCY	3 cut(s)	79, 118, 175
DpnI	GATC	4 cut(s)	5, 57, 69, 162
DpnII	GATC	4 cut(s)	3, 55, 67, 160
Eco57I	CTGAAG	1 cut(s)	111
FaeI	CATG	1 cut(s)	158
FaiI	YATR	2 cut(s)	143, 156
FaqI	GGGAC	1 cut(s)	110
FatI	CATG	1 cut(s)	154
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	133
Fsp4HI	GCNGC	1 cut(s)	133
FspBI	CTAG	1 cut(s)	119
GluI	GCNGC	1 cut(s)	133
GsuI	CTGGAG	3 cut(s)	59, 98, 215
HgaI	GACGC	1 cut(s)	107
Hin1II	CATG	1 cut(s)	158
HindIII	AAGCTT	1 cut(s)	173
HinfI	GANTC	1 cut(s)	151
HphI	GGTGA	1 cut(s)	49
Hpy188I	TCNGA	3 cut(s)	125, 165, 205
Hpy188III	TCNNGA	2 cut(s)	65, 194
HpyAV	CCTTC	1 cut(s)	86
HpyCH4III	ACNGT	1 cut(s)	212
HpyCH4V	TGCA	2 cut(s)	110, 135
HpyF10VI	GCNNNNNNNGC	1 cut(s)	107
Hsp92II	CATG	1 cut(s)	158
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	4 cut(s)	3, 55, 67, 160
LpnPI	CCDG	5 cut(s)	24, 89, 121, 128, 179
Lsp1109I	GCAGC	1 cut(s)	119
LweI	GCATC	1 cut(s)	97
MaeI	CTAG	1 cut(s)	119
MalI	GATC	4 cut(s)	5, 57, 69, 162
MboI	GATC	4 cut(s)	3, 55, 67, 160
MboII	GAAGA	1 cut(s)	62
MlyI	GAGTC	1 cut(s)	145
MwoI	GCNNNNNNNGC	1 cut(s)	107
NdeII	GATC	4 cut(s)	3, 55, 67, 160
NlaIII	CATG	1 cut(s)	158
PkrI	GCNGC	1 cut(s)	134
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
PstI	CTGCAG	1 cut(s)	137
PstNI	CAGNNNCTG	1 cut(s)	129
SatI	GCNGC	1 cut(s)	133
Sau3AI	GATC	4 cut(s)	3, 55, 67, 160
SchI	GAGTC	1 cut(s)	145
SetI	ASST	4 cut(s)	39, 81, 120, 177
SfaNI	GCATC	1 cut(s)	97
SfcI	CTRYAG	1 cut(s)	133
SspMI	CTAG	1 cut(s)	119
TaaI	ACNGT	1 cut(s)	212
TaqI	TCGA	1 cut(s)	81
TscAI	CASTG	1 cut(s)	94
TseI	GCWGC	1 cut(s)	132
TspRI	CASTG	1 cut(s)	94
XspI	CTAG	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.