DNA-directed RNA polymerases I, II, and III subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G11475 |
| fragaria_vesca | FvH4_4g32930 FvH4_4g32930 |
| malus_domestica | MD05G1050000.v1.1 MD10G1057300.v1.1 |
| prunus_persica | Prupe.1G250300_v2.0.a1 Prupe.1G250300_v2.0.a1 |
| pyrus_communis | pycom05g04190 pycom10g04420 |
| rosa_chinensis | RchiOBHm_Chr5g0051151 |
| rosa_multiflora | Rmu_sc0000446.1_g000014 |
| rosa_roxburghii | Rroxscaffold_1G00029300 |
| rosa_rugosa | Rorug05G0266000 |
| rosa_wichuraiana | Rw0G023650 Rw5G031960 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 35 |
| Acc36I | ACCTGC | 1 cut(s) | 35 |
| AccI | GTMKAC | 1 cut(s) | 159 |
| AciI | CCGC | 1 cut(s) | 30 |
| AjiI | CACGTC | 1 cut(s) | 157 |
| AluBI | AGCT | 2 cut(s) | 175, 213 |
| AluI | AGCT | 2 cut(s) | 175, 213 |
| AspLEI | GCGC | 1 cut(s) | 18 |
| AspS9I | GGNCC | 1 cut(s) | 121 |
| AsuHPI | GGTGA | 2 cut(s) | 16, 49 |
| AvaII | GGWCC | 1 cut(s) | 121 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 80, 114 |
| BciVI | GTATCC | 1 cut(s) | 49 |
| BclI | TGATCA | 1 cut(s) | 3 |
| BfuAI | ACCTGC | 1 cut(s) | 35 |
| BfuI | GTATCC | 1 cut(s) | 49 |
| Bme18I | GGWCC | 1 cut(s) | 121 |
| BmgBI | CACGTC | 1 cut(s) | 157 |
| BmgT120I | GGNCC | 1 cut(s) | 121 |
| BmrI | ACTGGG | 1 cut(s) | 5 |
| BmsI | GCATC | 2 cut(s) | 88, 97 |
| BmuI | ACTGGG | 1 cut(s) | 5 |
| BoxI | GACNNNNGTC | 1 cut(s) | 155 |
| BsaAI | YACGTR | 1 cut(s) | 60 |
| BsaBI | GATNNNNATC | 1 cut(s) | 60 |
| Bse1I | ACTGG | 1 cut(s) | 11 |
| Bse8I | GATNNNNATC | 1 cut(s) | 60 |
| BseGI | GGATG | 1 cut(s) | 6 |
| BseJI | GATNNNNATC | 1 cut(s) | 60 |
| BseNI | ACTGG | 1 cut(s) | 11 |
| BsmI | GAATGC | 1 cut(s) | 147 |
| Bsp143I | GATC | 1 cut(s) | 3 |
| BspACI | CCGC | 1 cut(s) | 30 |
| BspMI | ACCTGC | 1 cut(s) | 35 |
| BsrI | ACTGG | 1 cut(s) | 11 |
| BssMI | GATC | 1 cut(s) | 3 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 107 |
| BstBAI | YACGTR | 1 cut(s) | 60 |
| BstC8I | GCNNGC | 1 cut(s) | 78 |
| BstF5I | GGATG | 1 cut(s) | 6 |
| BstHHI | GCGC | 1 cut(s) | 18 |
| BstKTI | GATC | 1 cut(s) | 6 |
| BstMBI | GATC | 1 cut(s) | 3 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 107 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 155 |
| BstSNI | TACGTA | 1 cut(s) | 60 |
| BsuI | GTATCC | 1 cut(s) | 49 |
| BtrI | CACGTC | 1 cut(s) | 157 |
| BtsCI | GGATG | 1 cut(s) | 6 |
| BtsIMutI | CAGTG | 1 cut(s) | 18 |
| BveI | ACCTGC | 1 cut(s) | 35 |
| Cac8I | GCNNGC | 1 cut(s) | 78 |
| CfoI | GCGC | 1 cut(s) | 18 |
| Cfr13I | GGNCC | 1 cut(s) | 121 |
| CviJI | RGCY | 2 cut(s) | 175, 213 |
| CviKI_1 | RGCY | 2 cut(s) | 175, 213 |
| DpnI | GATC | 1 cut(s) | 5 |
| DpnII | GATC | 1 cut(s) | 3 |
| Eco105I | TACGTA | 1 cut(s) | 60 |
| Eco47I | GGWCC | 1 cut(s) | 121 |
| EcoT22I | ATGCAT | 1 cut(s) | 112 |
| FaiI | YATR | 1 cut(s) | 149 |
| FbaI | TGATCA | 1 cut(s) | 3 |
| FblI | GTMKAC | 1 cut(s) | 159 |
| GlaI | GCGC | 1 cut(s) | 17 |
| HhaI | GCGC | 1 cut(s) | 18 |
| Hin6I | GCGC | 1 cut(s) | 16 |
| HinP1I | GCGC | 1 cut(s) | 16 |
| HincII | GTYRAC | 1 cut(s) | 160 |
| HindII | GTYRAC | 1 cut(s) | 160 |
| HindIII | AAGCTT | 1 cut(s) | 173 |
| HinfI | GANTC | 1 cut(s) | 151 |
| HphI | GGTGA | 2 cut(s) | 16, 49 |
| Hpy166II | GTNNAC | 1 cut(s) | 160 |
| Hpy188I | TCNGA | 2 cut(s) | 180, 205 |
| Hpy188III | TCNNGA | 2 cut(s) | 65, 169 |
| Hpy8I | GTNNAC | 1 cut(s) | 160 |
| Hpy99I | CGWCG | 1 cut(s) | 161 |
| HpyAV | CCTTC | 2 cut(s) | 80, 86 |
| HpyCH4IV | ACGT | 2 cut(s) | 59, 156 |
| HpyCH4V | TGCA | 3 cut(s) | 76, 101, 110 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 107 |
| HpySE526I | ACGT | 2 cut(s) | 59, 156 |
| HspAI | GCGC | 1 cut(s) | 16 |
| Ksp22I | TGATCA | 1 cut(s) | 3 |
| Kzo9I | GATC | 1 cut(s) | 3 |
| LpnPI | CCDG | 2 cut(s) | 24, 40 |
| LweI | GCATC | 2 cut(s) | 88, 97 |
| MaeII | ACGT | 2 cut(s) | 59, 156 |
| MalI | GATC | 1 cut(s) | 5 |
| MboI | GATC | 1 cut(s) | 3 |
| MlyI | GAGTC | 1 cut(s) | 145 |
| MnlI | CCTC | 1 cut(s) | 173 |
| Mph1103I | ATGCAT | 1 cut(s) | 112 |
| MslI | CAYNNNNRTG | 1 cut(s) | 11 |
| MspA1I | CMGCKG | 1 cut(s) | 213 |
| Mva1269I | GAATGC | 1 cut(s) | 147 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 107 |
| NdeII | GATC | 1 cut(s) | 3 |
| NsiI | ATGCAT | 1 cut(s) | 112 |
| PaqCI | CACCTGC | 1 cut(s) | 35 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 165 |
| PctI | GAATGC | 1 cut(s) | 147 |
| PleI | GAGTC | 1 cut(s) | 145 |
| PpsI | GAGTC | 1 cut(s) | 145 |
| Ppu21I | YACGTR | 1 cut(s) | 60 |
| PshAI | GACNNNNGTC | 1 cut(s) | 155 |
| PspPI | GGNCC | 1 cut(s) | 121 |
| PvuII | CAGCTG | 1 cut(s) | 213 |
| RseI | CAYNNNNRTG | 1 cut(s) | 11 |
| SalI | GTCGAC | 1 cut(s) | 158 |
| Sau3AI | GATC | 1 cut(s) | 3 |
| Sau96I | GGNCC | 1 cut(s) | 121 |
| SchI | GAGTC | 1 cut(s) | 145 |
| SetI | ASST | 8 cut(s) | 29, 39, 62, 72, 159, 165, 177, 215 |
| SfaNI | GCATC | 2 cut(s) | 88, 97 |
| SgeI | CNNG | 7 cut(s) | 23, 39, 77, 89, 116, 167, 181 |
| SinI | GGWCC | 1 cut(s) | 121 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 11 |
| SnaBI | TACGTA | 1 cut(s) | 60 |
| SsiI | CCGC | 1 cut(s) | 30 |
| TaiI | ACGT | 2 cut(s) | 62, 159 |
| TaqI | TCGA | 2 cut(s) | 159, 168 |
| TscAI | CASTG | 1 cut(s) | 18 |
| TspGWI | ACGGA | 1 cut(s) | 113 |
| TspRI | CASTG | 1 cut(s) | 18 |
| VpaK11BI | GGWCC | 1 cut(s) | 121 |
| XmiI | GTMKAC | 1 cut(s) | 159 |
| Zsp2I | ATGCAT | 1 cut(s) | 112 |