AT1G11930

Pyridoxal 5'-phosphate (PLP)-binding protein, which may be involved in intracellular homeostatic regulation of pyridoxal 5'-phosphate (PLP), the active form of vitamin B6

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012902
Physical Location & Seq
Forward (+)
4028595 .. 4030656
2062 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G11930.2

Sequence Viewer

Length: 774 bp
ATGAACGAAGAGGAGCCAGACAAAGAACACGTGGCGGATTCTACTATGTCGGCGGCGGCGATTGATGGTGTGGCGGCTCTGAGATCGGTGTTTCAGCGGGTAAACCAGGCGGCGGAGAAAGCGGGTCGTGGGTCGGATCAGATACGGGTCGTAGCGGTGAGTAAGACGAAACCAGTTTCTCTGATTCGCCAAGTATACGACGCTGGTCAGAGGTCTTTTGGAGAGAATTATGTGCAAGAGATCATTGAGAAGGCACCTCAGCTTCCAGAAGATATAGAGTGGCATTTCATTGGGAATTTGCAGAGCAACAAAGTGAAGCCTTTGCTATCTGGTGTTCCTAACCTTGTGACCGTGGAAAGTGTTGATGATGAAAAGATTGCAAATATGCTTGATCGTGTGGTTGGTAATATCGGAAGAAAGCCCTTGAAGGTATTTGTCCAAGTGAATACCAGTGGTGAAGACTCTAAATTCGGCGTGGAACCCTCGGGATGCGTAGGACTGGCGAAACACGTGAAGGAAGCTTGCTCGAATCTTGAGTTTTCTGGTTTGATGACAATAGGGATGGCTGATTACACTTCAACCCCAGAGAATTTCAAGTTGCTTGCGAAATGCAGAAGTGAAGTGTGTAAGGAGCTTGGAATACCGGAGGAGCAATGTGAGCTATCTATGGGGATGTCTGGTGACTTTGAACTAGCATTGCAGATTGAACTGGGAAGCACAAATGTGAGAATAGGATCTACTATTTTCGGGGCGAGAGAGTATCCTAAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ala_racemase_N

Protein Analysis

257

Amino Acids

28.01

Weight (kDa)

5.12

Isoelectric Point (pI)

40.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ala_racemase_N PF01168 32 - 250 1.7e-14 Alanine racemase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012902)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11930 AT1G11930
fragaria_vesca FvH4_3g01630 FvH4_3g01630 FvH4_3g01630
malus_domestica MD05G1350700.v1.1 MD10G1325400.v1.1
prunus_persica Prupe.4G016700_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0002421
rosa_laevigata RLG00000031031
rosa_multiflora Rmu_sc0001717.1_g000005
rosa_roxburghii Rroxscaffold_1G00073430
rosa_rugosa Rorug04G0396100
rosa_samantha Rh5AG019000 Rh5BG021900 Rh5CG020900 Rh5DG020000
rosa_wichuraiana Rw5G001780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 253
AccI GTMKAC 1 cut(s) 195
AciI CCGC 9 cut(s) 35, 53, 56, 74, 97, 110, 113, 122, 155
AclWI GGATC 2 cut(s) 144, 742
AcsI RAATTY 3 cut(s) 295, 467, 589
AcvI CACGTG 2 cut(s) 31, 511
AfiI CCNNNNNNNGG 1 cut(s) 112
AflIII ACRYGT 2 cut(s) 28, 508
AgsI TTSAA 5 cut(s) 427, 579, 595, 689, 707
AjnI CCWGG 1 cut(s) 105
AleI CACNNNNGTG 1 cut(s) 722
AluBI AGCT 4 cut(s) 262, 521, 634, 661
AluI AGCT 4 cut(s) 262, 521, 634, 661
AlwI GGATC 2 cut(s) 144, 742
Ama87I CYCGRG 1 cut(s) 484
ApoI RAATTY 3 cut(s) 295, 467, 589
ArsI GACNNNNNNTTYG 2 cut(s) 452, 484
AsuHPI GGTGA 3 cut(s) 169, 467, 692
AvaI CYCGRG 1 cut(s) 484
BanI GGYRCC 1 cut(s) 253
BbrPI CACGTG 2 cut(s) 31, 511
BbsI GAAGAC 1 cut(s) 465
BbvCI CCTCAGC 1 cut(s) 258
BccI CCATC 2 cut(s) 59, 556
BciT130I CCWGG 1 cut(s) 107
BciVI GTATCC 1 cut(s) 771
BfaI CTAG 1 cut(s) 692
BfuI GTATCC 1 cut(s) 771
BisI GCNGC 4 cut(s) 54, 57, 75, 111
BlsI GCNGC 4 cut(s) 55, 58, 76, 112
Bme1390I CCNGG 1 cut(s) 107
BmeT110I CYCGRG 1 cut(s) 484
BmiI GGNNCC 3 cut(s) 15, 255, 480
BmrFI CCNGG 1 cut(s) 107
BmrI ACTGGG 1 cut(s) 719
BmsI GCATC 1 cut(s) 479
BmuI ACTGGG 1 cut(s) 719
BoxI GACNNNNGTC 1 cut(s) 204
BpiI GAAGAC 1 cut(s) 465
Bpu10I CCTNAGC 1 cut(s) 258
BpuEI CTTGAG 1 cut(s) 554
BsaAI YACGTR 2 cut(s) 31, 511
BsaJI CCNNGG 2 cut(s) 351, 483
BsaWI WCCGGW 1 cut(s) 643
Bsc4I CCNNNNNNNGG 1 cut(s) 112
Bse1I ACTGG 4 cut(s) 173, 450, 504, 714
Bse3DI GCAATG 2 cut(s) 659, 695
BseBI CCWGG 1 cut(s) 107
BseDI CCNNGG 2 cut(s) 351, 483
BseGI GGATG 3 cut(s) 494, 567, 678
BseLI CCNNNNNNNGG 1 cut(s) 112
BseMI GCAATG 2 cut(s) 659, 695
BseMII CTCAG 2 cut(s) 71, 272
BseNI ACTGG 4 cut(s) 173, 450, 504, 714
BseRI GAGGAG 2 cut(s) 26, 662
BshNI GGYRCC 1 cut(s) 253
BsiHKCI CYCGRG 1 cut(s) 484
BsiSI CCGG 1 cut(s) 644
BslI CCNNNNNNNGG 1 cut(s) 112
BsoBI CYCGRG 1 cut(s) 484
Bsp143I GATC 5 cut(s) 83, 136, 240, 391, 734
BspACI CCGC 9 cut(s) 35, 53, 56, 74, 97, 110, 113, 122, 155
BspCNI CTCAG 2 cut(s) 72, 271
BspLI GGNNCC 3 cut(s) 15, 255, 480
BspPI GGATC 2 cut(s) 144, 742
BspT107I GGYRCC 1 cut(s) 253
BsrDI GCAATG 2 cut(s) 659, 695
BsrI ACTGG 4 cut(s) 173, 450, 504, 714
BssECI CCNNGG 2 cut(s) 351, 483
BssMI GATC 5 cut(s) 83, 136, 240, 391, 734
BssNAI GTATAC 1 cut(s) 196
Bst1107I GTATAC 1 cut(s) 196
Bst2UI CCWGG 1 cut(s) 107
Bst4CI ACNGT 1 cut(s) 352
Bst6I CTCTTC 1 cut(s) 3
BstBAI YACGTR 2 cut(s) 31, 511
BstC8I GCNNGC 2 cut(s) 523, 603
BstDEI CTNAG 3 cut(s) 80, 258, 765
BstDSI CCRYGG 1 cut(s) 351
BstF5I GGATG 3 cut(s) 494, 567, 678
BstKTI GATC 5 cut(s) 86, 139, 243, 394, 737
BstMBI GATC 5 cut(s) 83, 136, 240, 391, 734
BstMWI GCNNNNNNNGC 2 cut(s) 119, 658
BstNI CCWGG 1 cut(s) 107
BstPAI GACNNNNGTC 1 cut(s) 204
BstSCI CCNGG 1 cut(s) 105
BstV2I GAAGAC 1 cut(s) 465
BstX2I RGATCY 1 cut(s) 734
BstYI RGATCY 1 cut(s) 734
BstZ17I GTATAC 1 cut(s) 196
BsuI GTATCC 1 cut(s) 771
BtgI CCRYGG 1 cut(s) 351
BtsCI GGATG 3 cut(s) 494, 567, 678
BtsIMutI CAGTG 1 cut(s) 457
Cac8I GCNNGC 2 cut(s) 523, 603
CseI GACGC 1 cut(s) 209
CviJI RGCY 9 cut(s) 16, 77, 262, 319, 421, 521, 566, 634, 661
CviKI_1 RGCY 9 cut(s) 16, 77, 262, 319, 421, 521, 566, 634, 661
DdeI CTNAG 3 cut(s) 80, 258, 765
DpnI GATC 5 cut(s) 85, 138, 242, 393, 736
DpnII GATC 5 cut(s) 83, 136, 240, 391, 734
Eam1104I CTCTTC 1 cut(s) 3
EarI CTCTTC 1 cut(s) 3
EciI GGCGGA 2 cut(s) 50, 128
Eco72I CACGTG 2 cut(s) 31, 511
Eco88I CYCGRG 1 cut(s) 484
EcoRII CCWGG 1 cut(s) 105
FaiI YATR 6 cut(s) 47, 196, 231, 275, 386, 668
FauI CCCGC 2 cut(s) 90, 115
FblI GTMKAC 1 cut(s) 195
Fnu4HI GCNGC 4 cut(s) 54, 57, 75, 111
FokI GGATG 3 cut(s) 501, 574, 685
Fsp4HI GCNGC 4 cut(s) 54, 57, 75, 111
FspBI CTAG 1 cut(s) 692
GluI GCNGC 4 cut(s) 54, 57, 75, 111
HapII CCGG 1 cut(s) 644
HgaI GACGC 1 cut(s) 209
HindIII AAGCTT 1 cut(s) 519
HinfI GANTC 4 cut(s) 38, 184, 461, 529
HpaII CCGG 1 cut(s) 644
HphI GGTGA 3 cut(s) 169, 467, 692
Hpy166II GTNNAC 2 cut(s) 103, 196
Hpy188I TCNGA 6 cut(s) 81, 136, 141, 183, 210, 413
Hpy188III TCNNGA 3 cut(s) 266, 486, 533
Hpy8I GTNNAC 2 cut(s) 103, 196
Hpy99I CGWCG 1 cut(s) 203
HpyAV CCTTC 3 cut(s) 244, 421, 508
HpyCH4III ACNGT 1 cut(s) 352
HpyCH4IV ACGT 2 cut(s) 30, 510
HpyCH4V TGCA 5 cut(s) 235, 301, 380, 612, 700
HpyF10VI GCNNNNNNNGC 2 cut(s) 119, 658
HpyF3I CTNAG 3 cut(s) 80, 258, 765
HpySE526I ACGT 2 cut(s) 30, 510
Kzo9I GATC 5 cut(s) 83, 136, 240, 391, 734
LmnI GCTCC 3 cut(s) 13, 631, 649
LweI GCATC 1 cut(s) 479
MaeI CTAG 1 cut(s) 692
MaeII ACGT 2 cut(s) 30, 510
MaeIII GTNAC 2 cut(s) 346, 680
MalI GATC 5 cut(s) 85, 138, 242, 393, 736
MboI GATC 5 cut(s) 83, 136, 240, 391, 734
MboII GAAGA 4 cut(s) 20, 281, 426, 470
MflI RGATCY 1 cut(s) 734
MluCI AATT 4 cut(s) 226, 295, 467, 589
MlyI GAGTC 1 cut(s) 455
MmeI TCCRAC 1 cut(s) 114
MnlI CCTC 5 cut(s) 4, 204, 267, 493, 640
MslI CAYNNNNRTG 1 cut(s) 722
MspA1I CMGCKG 1 cut(s) 97
MspI CCGG 1 cut(s) 644
MspR9I CCNGG 1 cut(s) 107
MvaI CCWGG 1 cut(s) 107
MwoI GCNNNNNNNGC 2 cut(s) 119, 658
NdeII GATC 5 cut(s) 83, 136, 240, 391, 734
NlaIV GGNNCC 3 cut(s) 15, 255, 480
NmuCI GTSAC 2 cut(s) 346, 680
OliI CACNNNNGTG 1 cut(s) 722
PcsI WCGNNNNNNNCGW 1 cut(s) 56
PfeI GAWTC 3 cut(s) 38, 184, 529
PkrI GCNGC 4 cut(s) 55, 58, 76, 112
PleI GAGTC 1 cut(s) 455
PmaCI CACGTG 2 cut(s) 31, 511
PmlI CACGTG 2 cut(s) 31, 511
PpsI GAGTC 1 cut(s) 455
Ppu21I YACGTR 2 cut(s) 31, 511
PshAI GACNNNNGTC 1 cut(s) 204
Psp6I CCWGG 1 cut(s) 105
PspCI CACGTG 2 cut(s) 31, 511
PspGI CCWGG 1 cut(s) 105
PspN4I GGNNCC 3 cut(s) 15, 255, 480
PsuI RGATCY 1 cut(s) 734
RseI CAYNNNNRTG 1 cut(s) 722
SatI GCNGC 4 cut(s) 54, 57, 75, 111
Sau3AI GATC 5 cut(s) 83, 136, 240, 391, 734
SchI GAGTC 1 cut(s) 455
ScrFI CCNGG 1 cut(s) 107
SfaNI GCATC 1 cut(s) 479
SmiMI CAYNNNNRTG 1 cut(s) 722
SmlI CTYRAG 1 cut(s) 533
SmoI CTYRAG 1 cut(s) 533
Sse9I AATT 4 cut(s) 226, 295, 467, 589
SsiI CCGC 9 cut(s) 35, 53, 56, 74, 97, 110, 113, 122, 155
SspMI CTAG 1 cut(s) 692
StyD4I CCNGG 1 cut(s) 105
TaaI ACNGT 1 cut(s) 352
TaiI ACGT 2 cut(s) 33, 513
TaqI TCGA 1 cut(s) 527
TasI AATT 4 cut(s) 226, 295, 467, 589
TauI GCSGC 4 cut(s) 56, 59, 77, 113
TfiI GAWTC 3 cut(s) 38, 184, 529
TscAI CASTG 1 cut(s) 457
TseFI GTSAC 2 cut(s) 346, 680
Tsp45I GTSAC 2 cut(s) 346, 680
TspDTI ATGAA 3 cut(s) 17, 277, 384
TspRI CASTG 1 cut(s) 457
XapI RAATTY 3 cut(s) 295, 467, 589
XmiI GTMKAC 1 cut(s) 195
XspI CTAG 1 cut(s) 692
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.