FvH4_3g01630

Pyridoxal 5'-phosphate (PLP)-binding protein, which may be involved in intracellular homeostatic regulation of pyridoxal 5'-phosphate (PLP), the active form of vitamin B6

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0012902
Physical Location & Seq
Reverse (-)
852844 .. 855245
2402 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g01630.t2

Sequence Viewer

Length: 741 bp
ATGTCCAGCTCCGCCGCAGTCGACGGCGTCGCGGCCACCGCGCTCCGATCAGTTCTCCACCGCGTCCAGCTGGCAGCAGAAAAATCCGGCCGCCGCGCCGACGAGGTCCGGGTGGTGGCGGTGAGCAAGACGAAGCCGGCCGCCGTCCTCCGCCAAGTCTACGACGCCGGCCACCGCTGCTTCGGCGAGAATTACGTCCAGGAAATCGTCGAGAAAGCTCCTCAGCTTCCTGAAGATATAGAGTGGCATTTTATTGGGAATTTGCAGAGCAATAAAGTAAAGCCACTTCTAACTGGTGTGCCCAACCTTGCAATGGTAGAGAGTGTGGATGATGAGAAGATTGCAAACCGTCTTAATACTGTTGTTTCTAGCATTGGGAGAAAGCCTCTTAAGGTGTTGCTCCAAGTGAATACTAGTGGAGAAGAATCAAAATTTGGTGTTGAACCCTCTGGATGTGTGGAGCTCGCAAAGCATGTGAGTTTGGATTGTCCAAACCTTGAGTTTTGTGGTCTAATGACCATTGGTATGTTGGATTATTCATCTACGCCAGAAAACTTTAAGACATTAGCCAACTGCAGAGCTGAGGTCTGCAAGGCACTTGGAATTCCAGTAGAGAAATGTGAGCTATCAATGGGCATGTCTGCGGACTTTGAGCAAGCTATTGAAATGGGAAGCACAAATGTGAGAATTGGATCGACAATATTTGGGCCAAGAGAATATCCAAAGAAACAATCGCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ala_racemase_N

Protein Analysis

247

Amino Acids

26.68

Weight (kDa)

6.14

Isoelectric Point (pI)

41.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ala_racemase_N PF01168 18 - 216 1.1e-13 Alanine racemase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012902)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11930 AT1G11930
fragaria_vesca FvH4_3g01630 FvH4_3g01630 FvH4_3g01630
malus_domestica MD05G1350700.v1.1 MD10G1325400.v1.1
prunus_persica Prupe.4G016700_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0002421
rosa_laevigata RLG00000031031
rosa_multiflora Rmu_sc0001717.1_g000005
rosa_roxburghii Rroxscaffold_1G00073430
rosa_rugosa Rorug04G0396100
rosa_samantha Rh5AG019000 Rh5BG021900 Rh5CG020900 Rh5DG020000
rosa_wichuraiana Rw5G001780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 21, 159
AccII CGCG 4 cut(s) 32, 41, 63, 96
AclWI GGATC 1 cut(s) 700
AcoI YGGCCR 4 cut(s) 33, 88, 138, 169
AcsI RAATTY 3 cut(s) 259, 431, 603
AcuI CTGAAG 1 cut(s) 252
AcyI GRCGYC 2 cut(s) 27, 165
AfiI CCNNNNNNNGG 2 cut(s) 115, 313
AflII CTTAAG 1 cut(s) 389
AgsI TTSAA 2 cut(s) 443, 665
AhlI ACTAGT 1 cut(s) 413
AjnI CCWGG 1 cut(s) 198
AjuI GAANNNNNNNTTGG 2 cut(s) 417, 449
AleI CACNNNNGTG 1 cut(s) 680
AluBI AGCT 8 cut(s) 9, 70, 218, 226, 463, 581, 625, 659
AluI AGCT 8 cut(s) 9, 70, 218, 226, 463, 581, 625, 659
Alw21I GWGCWC 1 cut(s) 465
AlwI GGATC 1 cut(s) 700
AoxI GGCC 5 cut(s) 33, 88, 138, 169, 707
ApeKI GCWGC 2 cut(s) 74, 177
ApoI RAATTY 3 cut(s) 259, 431, 603
AspLEI GCGC 2 cut(s) 43, 98
AspS9I GGNCC 2 cut(s) 106, 707
AsuC2I CCSGG 1 cut(s) 110
AsuHPI GGTGA 1 cut(s) 133
AvaII GGWCC 1 cut(s) 106
BaeGI GKGCMC 1 cut(s) 303
BanII GRGCYC 1 cut(s) 465
BarI GAAGNNNNNNTAC 2 cut(s) 270, 302
Bbv12I GWGCWC 1 cut(s) 465
BbvCI CCTCAGC 2 cut(s) 222, 582
BbvI GCAGC 2 cut(s) 86, 164
BceAI ACGGC 2 cut(s) 40, 128
BciT130I CCWGG 1 cut(s) 200
BcnI CCSGG 1 cut(s) 110
BcuI ACTAGT 1 cut(s) 413
BfaI CTAG 2 cut(s) 369, 414
BfmI CTRYAG 1 cut(s) 574
BfrI CTTAAG 1 cut(s) 389
BisI GCNGC 7 cut(s) 15, 33, 75, 91, 94, 141, 178
BlsI GCNGC 7 cut(s) 16, 34, 76, 92, 95, 142, 179
Bme1390I CCNGG 2 cut(s) 110, 200
Bme18I GGWCC 1 cut(s) 106
BmgT120I GGNCC 2 cut(s) 106, 707
BmrFI CCNGG 2 cut(s) 110, 200
BplI GAGNNNNNCTC 2 cut(s) 370, 402
Bpu10I CCTNAGC 2 cut(s) 222, 582
BpuEI CTTGAG 1 cut(s) 518
BpuMI CCSGG 1 cut(s) 110
BsaHI GRCGYC 2 cut(s) 27, 165
Bsc4I CCNNNNNNNGG 2 cut(s) 115, 313
Bse118I RCCGGY 2 cut(s) 136, 167
Bse1I ACTGG 2 cut(s) 298, 608
Bse3DI GCAATG 1 cut(s) 318
BseBI CCWGG 1 cut(s) 200
BseGI GGATG 2 cut(s) 334, 458
BseLI CCNNNNNNNGG 2 cut(s) 115, 313
BseMI GCAATG 1 cut(s) 318
BseMII CTCAG 2 cut(s) 236, 573
BseNI ACTGG 2 cut(s) 298, 608
BseRI GAGGAG 1 cut(s) 210
BseSI GKGCMC 1 cut(s) 303
BseX3I CGGCCG 2 cut(s) 88, 138
BseXI GCAGC 2 cut(s) 86, 164
Bsh1236I CGCG 4 cut(s) 32, 41, 63, 96
Bsh1285I CGRYCG 2 cut(s) 91, 141
BshFI GGCC 5 cut(s) 35, 90, 140, 171, 709
BsiEI CGRYCG 2 cut(s) 91, 141
BsiHKAI GWGCWC 1 cut(s) 465
BsiSI CCGG 4 cut(s) 87, 109, 137, 168
BslI CCNNNNNNNGG 2 cut(s) 115, 313
BsnI GGCC 5 cut(s) 35, 90, 140, 171, 709
Bsp1286I GDGCHC 2 cut(s) 303, 465
Bsp143I GATC 2 cut(s) 47, 692
BspANI GGCC 5 cut(s) 35, 90, 140, 171, 709
BspCNI CTCAG 2 cut(s) 235, 574
BspFNI CGCG 4 cut(s) 32, 41, 63, 96
BspMAI CTGCAG 1 cut(s) 578
BspPI GGATC 1 cut(s) 700
BspTI CTTAAG 1 cut(s) 389
BsrDI GCAATG 1 cut(s) 318
BsrFI RCCGGY 2 cut(s) 136, 167
BsrI ACTGG 2 cut(s) 298, 608
BssAI RCCGGY 2 cut(s) 136, 167
BssMI GATC 2 cut(s) 47, 692
BssNI GRCGYC 2 cut(s) 27, 165
Bst2UI CCWGG 1 cut(s) 200
Bst4CI ACNGT 2 cut(s) 350, 361
BstACI GRCGYC 2 cut(s) 27, 165
BstAFI CTTAAG 1 cut(s) 389
BstC8I GCNNGC 5 cut(s) 72, 138, 169, 465, 657
BstDEI CTNAG 3 cut(s) 222, 582, 738
BstF5I GGATG 2 cut(s) 334, 458
BstFNI CGCG 4 cut(s) 32, 41, 63, 96
BstHHI GCGC 2 cut(s) 43, 98
BstKTI GATC 2 cut(s) 50, 695
BstMBI GATC 2 cut(s) 47, 692
BstMCI CGRYCG 2 cut(s) 91, 141
BstMWI GCNNNNNNNGC 4 cut(s) 38, 177, 183, 469
BstNI CCWGG 1 cut(s) 200
BstNSI RCATGY 2 cut(s) 476, 640
BstSCI CCNGG 2 cut(s) 108, 198
BstSFI CTRYAG 1 cut(s) 574
BstSLI GKGCMC 1 cut(s) 303
BstUI CGCG 4 cut(s) 32, 41, 63, 96
BstV1I GCAGC 2 cut(s) 86, 164
BstZI CGGCCG 2 cut(s) 88, 138
BsuRI GGCC 5 cut(s) 35, 90, 140, 171, 709
BtsCI GGATG 2 cut(s) 334, 458
Cac8I GCNNGC 5 cut(s) 72, 138, 169, 465, 657
CfoI GCGC 2 cut(s) 43, 98
Cfr10I RCCGGY 2 cut(s) 136, 167
Cfr13I GGNCC 2 cut(s) 106, 707
CseI GACGC 3 cut(s) 16, 52, 173
CviAII CATG 2 cut(s) 473, 637
DdeI CTNAG 3 cut(s) 222, 582, 738
DpnI GATC 2 cut(s) 49, 694
DpnII GATC 2 cut(s) 47, 692
EaeI YGGCCR 4 cut(s) 33, 88, 138, 169
EagI CGGCCG 2 cut(s) 88, 138
EciI GGCGGA 1 cut(s) 140
Ecl136II GAGCTC 1 cut(s) 463
EclXI CGGCCG 2 cut(s) 88, 138
Eco24I GRGCYC 1 cut(s) 465
Eco47I GGWCC 1 cut(s) 106
Eco52I CGGCCG 2 cut(s) 88, 138
Eco53kI GAGCTC 1 cut(s) 463
Eco57I CTGAAG 1 cut(s) 252
EcoICRI GAGCTC 1 cut(s) 463
EcoRI GAATTC 1 cut(s) 603
EcoRII CCWGG 1 cut(s) 198
EcoT38I GRGCYC 1 cut(s) 465
FaeI CATG 2 cut(s) 476, 640
FaiI YATR 4 cut(s) 239, 474, 527, 638
FatI CATG 2 cut(s) 472, 636
FblI GTMKAC 2 cut(s) 21, 159
Fnu4HI GCNGC 7 cut(s) 15, 33, 75, 91, 94, 141, 178
FokI GGATG 2 cut(s) 341, 465
FriOI GRGCYC 1 cut(s) 465
Fsp4HI GCNGC 7 cut(s) 15, 33, 75, 91, 94, 141, 178
FspBI CTAG 2 cut(s) 369, 414
GlaI GCGC 2 cut(s) 42, 97
GluI GCNGC 7 cut(s) 15, 33, 75, 91, 94, 141, 178
HaeIII GGCC 5 cut(s) 35, 90, 140, 171, 709
HapII CCGG 4 cut(s) 87, 109, 137, 168
HgaI GACGC 3 cut(s) 16, 52, 173
HhaI GCGC 2 cut(s) 43, 98
Hin1I GRCGYC 2 cut(s) 27, 165
Hin1II CATG 2 cut(s) 476, 640
Hin6I GCGC 2 cut(s) 41, 96
HinP1I GCGC 2 cut(s) 41, 96
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HinfI GANTC 1 cut(s) 425
HpaII CCGG 4 cut(s) 87, 109, 137, 168
HphI GGTGA 1 cut(s) 133
Hpy166II GTNNAC 2 cut(s) 22, 160
Hpy188I TCNGA 1 cut(s) 47
Hpy188III TCNNGA 3 cut(s) 211, 230, 450
Hpy8I GTNNAC 2 cut(s) 22, 160
Hpy99I CGWCG 5 cut(s) 26, 32, 104, 167, 212
HpyCH4III ACNGT 2 cut(s) 350, 361
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 5 cut(s) 265, 311, 344, 576, 591
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 177, 183, 469
HpyF3I CTNAG 3 cut(s) 222, 582, 738
HpySE526I ACGT 1 cut(s) 195
Hsp92I GRCGYC 2 cut(s) 27, 165
Hsp92II CATG 2 cut(s) 476, 640
HspAI GCGC 2 cut(s) 41, 96
KroI GCCGGC 2 cut(s) 136, 167
KroNI GCCGGC 2 cut(s) 138, 169
Kzo9I GATC 2 cut(s) 47, 692
LmnI GCTCC 5 cut(s) 14, 48, 223, 405, 460
Lsp1109I GCAGC 2 cut(s) 86, 164
MaeI CTAG 2 cut(s) 369, 414
MaeII ACGT 1 cut(s) 195
MalI GATC 2 cut(s) 49, 694
MboI GATC 2 cut(s) 47, 692
MboII GAAGA 3 cut(s) 245, 349, 434
MhlI GDGCHC 2 cut(s) 303, 465
MluCI AATT 5 cut(s) 190, 259, 431, 603, 687
MmeI TCCRAC 1 cut(s) 510
MnlI CCTC 6 cut(s) 97, 158, 231, 396, 457, 577
MroNI GCCGGC 2 cut(s) 136, 167
MseI TTAA 3 cut(s) 354, 390, 558
MslI CAYNNNNRTG 2 cut(s) 524, 680
MspA1I CMGCKG 2 cut(s) 70, 177
MspCI CTTAAG 1 cut(s) 389
MspI CCGG 4 cut(s) 87, 109, 137, 168
MspR9I CCNGG 2 cut(s) 110, 200
MvaI CCWGG 1 cut(s) 200
MvnI CGCG 4 cut(s) 32, 41, 63, 96
MwoI GCNNNNNNNGC 4 cut(s) 38, 177, 183, 469
NaeI GCCGGC 2 cut(s) 138, 169
NciI CCSGG 1 cut(s) 110
NdeII GATC 2 cut(s) 47, 692
NgoMIV GCCGGC 2 cut(s) 136, 167
NlaIII CATG 2 cut(s) 476, 640
NspI RCATGY 2 cut(s) 476, 640
OliI CACNNNNGTG 1 cut(s) 680
PdiI GCCGGC 2 cut(s) 138, 169
PfeI GAWTC 1 cut(s) 425
PflFI GACNNNGTC 2 cut(s) 26, 104
PfoI TCCNGGA 1 cut(s) 198
PkrI GCNGC 7 cut(s) 16, 34, 76, 92, 95, 142, 179
Psp124BI GAGCTC 1 cut(s) 465
Psp6I CCWGG 1 cut(s) 198
PspGI CCWGG 1 cut(s) 198
PspPI GGNCC 2 cut(s) 106, 707
PstI CTGCAG 1 cut(s) 578
PsyI GACNNNGTC 2 cut(s) 26, 104
PvuII CAGCTG 1 cut(s) 70
RseI CAYNNNNRTG 2 cut(s) 524, 680
SacI GAGCTC 1 cut(s) 465
SalI GTCGAC 1 cut(s) 20
SaqAI TTAA 3 cut(s) 354, 390, 558
SatI GCNGC 7 cut(s) 15, 33, 75, 91, 94, 141, 178
Sau3AI GATC 2 cut(s) 47, 692
Sau96I GGNCC 2 cut(s) 106, 707
ScrFI CCNGG 2 cut(s) 110, 200
SduI GDGCHC 2 cut(s) 303, 465
SfcI CTRYAG 1 cut(s) 574
SinI GGWCC 1 cut(s) 106
SmiMI CAYNNNNRTG 2 cut(s) 524, 680
SmlI CTYRAG 2 cut(s) 389, 497
SmoI CTYRAG 2 cut(s) 389, 497
SpeI ACTAGT 1 cut(s) 413
Sse9I AATT 5 cut(s) 190, 259, 431, 603, 687
SspI AATATT 1 cut(s) 702
SspMI CTAG 2 cut(s) 369, 414
SstI GAGCTC 1 cut(s) 465
StyD4I CCNGG 2 cut(s) 108, 198
TaaI ACNGT 2 cut(s) 350, 361
TaiI ACGT 1 cut(s) 198
TaqI TCGA 3 cut(s) 21, 210, 695
TasI AATT 5 cut(s) 190, 259, 431, 603, 687
TauI GCSGC 5 cut(s) 17, 35, 93, 96, 143
TfiI GAWTC 1 cut(s) 425
Tru1I TTAA 3 cut(s) 354, 390, 558
Tru9I TTAA 3 cut(s) 354, 390, 558
TseI GCWGC 2 cut(s) 74, 177
TspDTI ATGAA 1 cut(s) 528
Tth111I GACNNNGTC 2 cut(s) 26, 104
Vha464I CTTAAG 1 cut(s) 389
VpaK11BI GGWCC 1 cut(s) 106
XapI RAATTY 3 cut(s) 259, 431, 603
XceI RCATGY 2 cut(s) 476, 640
XcmI CCANNNNNNNNNTGG 2 cut(s) 310, 526
XmiI GTMKAC 2 cut(s) 21, 159
XspI CTAG 2 cut(s) 369, 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.