Prupe.4G016700_v2.0.a1

Pyridoxal 5'-phosphate (PLP)-binding protein, which may be involved in intracellular homeostatic regulation of pyridoxal 5'-phosphate (PLP), the active form of vitamin B6

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0012902
Physical Location & Seq
Reverse (-)
797310 .. 799497
2188 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G016700.1

Sequence Viewer

Length: 741 bp
ATGGCCAGCTCTGCCGCAATCGACGGCGTCGCAGCCGCGGCCCTCCGTTCCGTGATGCAGCGCGTCCAGCTGGCAGCCCAAAAATCGGGACGTGTAGCCCACGAGATCCGAGTGGTGGCGGTGAGCAAGACGAAGCCAGTCTCTGTGCTCCGCCAAGTGTACGACGCCGGCCATCGCTGTTTCGGCGAAAACTACGTCCAAGAACTCGTCGAGAAAGCTCCTCAGCTTCCGGAAGATATTGAGTGGCATTTTATTGGGAATTTGCAGAGCAACAAAGTAAAGCCCCTTCTAACTGGTGTACCCAACCTTGCAATGGTAGAGAGTGTGGATGATGAGAAGATTGCAAATCGTCTTGATACTGTAGTTGCTAGCATTGGCAGAAAGCCTTTGAAGGTCTTGCTCCAAGTGAATACCAGTGGAGAAGAATCAAAATCTGGTGTTGAGCCCTCTGGATGTGTGGAGCTCGCAAAGCATGTCAGTTTGGGCTGTCCAAACCTTGAGTTTTGTGGTCTAATGACAATTGGGATGCTGGATTATACATCTACACCAGAAAACTTTACGACATTAGCGAACTGCAGAACTGAGGTGTGCAAGGCACTTGGAATACCAGAAGAGCAATGTGAACTTTCAATGGGCATGTCTGCAGACTTCGAGCTAGCTATCGAATTGGGCAGCACAAATGTGAGAATTGGATCTACAATATTTGGGGCGAGAGAATATCCAAAGAAACTATCAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ala_racemase_N

Protein Analysis

247

Amino Acids

26.53

Weight (kDa)

5.67

Isoelectric Point (pI)

32.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012902)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11930 AT1G11930
fragaria_vesca FvH4_3g01630 FvH4_3g01630 FvH4_3g01630
malus_domestica MD05G1350700.v1.1 MD10G1325400.v1.1
prunus_persica Prupe.4G016700_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0002421
rosa_laevigata RLG00000031031
rosa_multiflora Rmu_sc0001717.1_g000005
rosa_roxburghii Rroxscaffold_1G00073430
rosa_rugosa Rorug04G0396100
rosa_samantha Rh5AG019000 Rh5BG021900 Rh5CG020900 Rh5DG020000
rosa_wichuraiana Rw5G001780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 38, 63
AccIII TCCGGA 1 cut(s) 229
AciI CCGC 5 cut(s) 15, 36, 38, 119, 151
AclWI GGATC 2 cut(s) 100, 700
AcoI YGGCCR 2 cut(s) 3, 169
AcsI RAATTY 1 cut(s) 259
AcyI GRCGYC 2 cut(s) 27, 165
AfaI GTAC 2 cut(s) 161, 300
AfiI CCNNNNNNNGG 3 cut(s) 85, 115, 313
AflIII ACRYGT 1 cut(s) 91
AgsI TTSAA 2 cut(s) 391, 630
AjiI CACGTC 1 cut(s) 92
AleI CACNNNNGTG 1 cut(s) 680
AluBI AGCT 7 cut(s) 9, 70, 218, 226, 463, 655, 659
AluI AGCT 7 cut(s) 9, 70, 218, 226, 463, 655, 659
Alw21I GWGCWC 2 cut(s) 150, 465
Alw26I GTCTC 1 cut(s) 145
AlwI GGATC 2 cut(s) 100, 700
AlwNI CAGNNNCTG 1 cut(s) 143
Aor13HI TCCGGA 1 cut(s) 229
AoxI GGCC 3 cut(s) 3, 39, 169
ApeKI GCWGC 4 cut(s) 32, 58, 74, 672
ApoI RAATTY 1 cut(s) 259
ArsI GACNNNNNNTTYG 2 cut(s) 180, 212
AspLEI GCGC 1 cut(s) 63
AspS9I GGNCC 1 cut(s) 40
AsuHPI GGTGA 1 cut(s) 133
AsuNHI GCTAGC 2 cut(s) 368, 655
BaeI ACNNNNGTAYC 4 cut(s) 282, 315, 348, 381
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 2 cut(s) 447, 465
BarI GAAGNNNNNNTAC 2 cut(s) 270, 302
BauI CACGAG 1 cut(s) 101
Bbv12I GWGCWC 2 cut(s) 150, 465
BbvCI CCTCAGC 1 cut(s) 222
BbvI GCAGC 4 cut(s) 44, 70, 86, 684
BccI CCATC 1 cut(s) 180
BceAI ACGGC 1 cut(s) 40
BcoDI GTCTC 1 cut(s) 145
BfaI CTAG 2 cut(s) 369, 656
BfmI CTRYAG 3 cut(s) 360, 574, 642
BisI GCNGC 7 cut(s) 15, 33, 36, 39, 59, 75, 673
BlsI GCNGC 7 cut(s) 16, 34, 37, 40, 60, 76, 674
BmgBI CACGTC 1 cut(s) 92
BmgT120I GGNCC 1 cut(s) 40
BmsI GCATC 2 cut(s) 45, 516
BmtI GCTAGC 2 cut(s) 372, 659
Bpu10I CCTNAGC 1 cut(s) 222
BpuEI CTTGAG 1 cut(s) 518
BsaHI GRCGYC 2 cut(s) 27, 165
BsaJI CCNNGG 1 cut(s) 36
BsaWI WCCGGW 1 cut(s) 229
Bsc4I CCNNNNNNNGG 3 cut(s) 85, 115, 313
Bse118I RCCGGY 1 cut(s) 167
Bse1I ACTGG 3 cut(s) 137, 298, 414
Bse3DI GCAATG 2 cut(s) 318, 623
BseAI TCCGGA 1 cut(s) 229
BseDI CCNNGG 1 cut(s) 36
BseGI GGATG 3 cut(s) 334, 458, 531
BseLI CCNNNNNNNGG 3 cut(s) 85, 115, 313
BseMI GCAATG 2 cut(s) 318, 623
BseMII CTCAG 2 cut(s) 236, 573
BseNI ACTGG 3 cut(s) 137, 298, 414
BseRI GAGGAG 1 cut(s) 210
BseXI GCAGC 4 cut(s) 44, 70, 86, 684
Bsh1236I CGCG 2 cut(s) 38, 63
BshFI GGCC 3 cut(s) 5, 41, 171
BsiHKAI GWGCWC 2 cut(s) 150, 465
BsiSI CCGG 2 cut(s) 168, 230
BslFI GGGAC 1 cut(s) 102
BslI CCNNNNNNNGG 3 cut(s) 85, 115, 313
BsmAI GTCTC 1 cut(s) 145
BsmFI GGGAC 1 cut(s) 102
BsnI GGCC 3 cut(s) 5, 41, 171
Bsp1286I GDGCHC 3 cut(s) 150, 447, 465
Bsp13I TCCGGA 1 cut(s) 229
Bsp143I GATC 2 cut(s) 105, 692
BspACI CCGC 5 cut(s) 15, 36, 38, 119, 151
BspANI GGCC 3 cut(s) 5, 41, 171
BspCNI CTCAG 2 cut(s) 235, 574
BspEI TCCGGA 1 cut(s) 229
BspFNI CGCG 2 cut(s) 38, 63
BspMAI CTGCAG 2 cut(s) 578, 646
BspOI GCTAGC 2 cut(s) 372, 659
BspPI GGATC 2 cut(s) 100, 700
BspQI GCTCTTC 1 cut(s) 606
BsrDI GCAATG 2 cut(s) 318, 623
BsrFI RCCGGY 1 cut(s) 167
BsrI ACTGG 3 cut(s) 137, 298, 414
BssAI RCCGGY 1 cut(s) 167
BssECI CCNNGG 1 cut(s) 36
BssMI GATC 2 cut(s) 105, 692
BssNI GRCGYC 2 cut(s) 27, 165
BssSI CACGAG 1 cut(s) 101
Bst2BI CACGAG 1 cut(s) 101
Bst4CI ACNGT 1 cut(s) 361
Bst6I CTCTTC 1 cut(s) 606
BstACI GRCGYC 2 cut(s) 27, 165
BstC8I GCNNGC 6 cut(s) 7, 72, 169, 370, 465, 657
BstDEI CTNAG 2 cut(s) 222, 582
BstDSI CCRYGG 1 cut(s) 36
BstF5I GGATG 3 cut(s) 334, 458, 531
BstFNI CGCG 2 cut(s) 38, 63
BstHHI GCGC 1 cut(s) 63
BstKTI GATC 2 cut(s) 108, 695
BstMAI GTCTC 1 cut(s) 145
BstMBI GATC 2 cut(s) 105, 692
BstMWI GCNNNNNNNGC 5 cut(s) 11, 38, 67, 183, 469
BstNSI RCATGY 2 cut(s) 476, 640
BstSFI CTRYAG 3 cut(s) 360, 574, 642
BstUI CGCG 2 cut(s) 38, 63
BstV1I GCAGC 4 cut(s) 44, 70, 86, 684
BstX2I RGATCY 2 cut(s) 105, 692
BstYI RGATCY 2 cut(s) 105, 692
BsuRI GGCC 3 cut(s) 5, 41, 171
BtgI CCRYGG 1 cut(s) 36
BtgZI GCGATG 1 cut(s) 158
BtrI CACGTC 1 cut(s) 92
BtsCI GGATG 3 cut(s) 334, 458, 531
BtsIMutI CAGTG 1 cut(s) 421
Cac8I GCNNGC 6 cut(s) 7, 72, 169, 370, 465, 657
CaiI CAGNNNCTG 1 cut(s) 143
CfoI GCGC 1 cut(s) 63
Cfr10I RCCGGY 1 cut(s) 167
Cfr13I GGNCC 1 cut(s) 40
Cfr42I CCGCGG 1 cut(s) 39
CseI GACGC 3 cut(s) 16, 52, 173
Csp6I GTAC 2 cut(s) 160, 299
CviAII CATG 2 cut(s) 473, 637
CviQI GTAC 2 cut(s) 160, 299
DdeI CTNAG 2 cut(s) 222, 582
DpnI GATC 2 cut(s) 107, 694
DpnII GATC 2 cut(s) 105, 692
EaeI YGGCCR 2 cut(s) 3, 169
Eam1104I CTCTTC 1 cut(s) 606
EarI CTCTTC 1 cut(s) 606
EciI GGCGGA 1 cut(s) 140
Ecl136II GAGCTC 1 cut(s) 463
Eco24I GRGCYC 2 cut(s) 447, 465
Eco53kI GAGCTC 1 cut(s) 463
EcoICRI GAGCTC 1 cut(s) 463
EcoT38I GRGCYC 2 cut(s) 447, 465
FaeI CATG 2 cut(s) 476, 640
FaiI YATR 3 cut(s) 474, 537, 638
FaqI GGGAC 1 cut(s) 102
FatI CATG 2 cut(s) 472, 636
Fnu4HI GCNGC 7 cut(s) 15, 33, 36, 39, 59, 75, 673
FokI GGATG 3 cut(s) 341, 465, 538
FriOI GRGCYC 2 cut(s) 447, 465
Fsp4HI GCNGC 7 cut(s) 15, 33, 36, 39, 59, 75, 673
FspBI CTAG 2 cut(s) 369, 656
GlaI GCGC 1 cut(s) 62
GluI GCNGC 7 cut(s) 15, 33, 36, 39, 59, 75, 673
HaeIII GGCC 3 cut(s) 5, 41, 171
HapII CCGG 2 cut(s) 168, 230
HgaI GACGC 3 cut(s) 16, 52, 173
HhaI GCGC 1 cut(s) 63
Hin1I GRCGYC 2 cut(s) 27, 165
Hin1II CATG 2 cut(s) 476, 640
Hin6I GCGC 1 cut(s) 61
HinP1I GCGC 1 cut(s) 61
HinfI GANTC 1 cut(s) 425
HpaII CCGG 2 cut(s) 168, 230
HphI GGTGA 1 cut(s) 133
Hpy166II GTNNAC 3 cut(s) 160, 299, 623
Hpy188I TCNGA 1 cut(s) 110
Hpy188III TCNNGA 5 cut(s) 87, 211, 230, 353, 450
Hpy8I GTNNAC 3 cut(s) 160, 299, 623
Hpy99I CGWCG 4 cut(s) 26, 32, 167, 212
HpyAV CCTTC 2 cut(s) 296, 385
HpyCH4III ACNGT 1 cut(s) 361
HpyCH4IV ACGT 2 cut(s) 91, 195
HpyCH4V TGCA 7 cut(s) 58, 265, 311, 344, 576, 591, 644
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 38, 67, 183, 469
HpyF3I CTNAG 2 cut(s) 222, 582
HpySE526I ACGT 2 cut(s) 91, 195
Hsp92I GRCGYC 2 cut(s) 27, 165
Hsp92II CATG 2 cut(s) 476, 640
HspAI GCGC 1 cut(s) 61
Kpn2I TCCGGA 1 cut(s) 229
KroI GCCGGC 1 cut(s) 167
KroNI GCCGGC 1 cut(s) 169
KspI CCGCGG 1 cut(s) 39
Kzo9I GATC 2 cut(s) 105, 692
LguI GCTCTTC 1 cut(s) 606
LmnI GCTCC 4 cut(s) 153, 223, 405, 460
Lsp1109I GCAGC 4 cut(s) 44, 70, 86, 684
LweI GCATC 2 cut(s) 45, 516
MaeI CTAG 2 cut(s) 369, 656
MaeII ACGT 2 cut(s) 91, 195
MalI GATC 2 cut(s) 107, 694
MboI GATC 2 cut(s) 105, 692
MboII GAAGA 4 cut(s) 245, 349, 434, 623
MfeI CAATTG 1 cut(s) 519
MflI RGATCY 2 cut(s) 105, 692
MhlI GDGCHC 3 cut(s) 150, 447, 465
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 5 cut(s) 259, 519, 665, 687, 736
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 4 cut(s) 53, 231, 457, 577
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 229
MroNI GCCGGC 1 cut(s) 167
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 1 cut(s) 680
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 38, 70
MspI CCGG 2 cut(s) 168, 230
MunI CAATTG 1 cut(s) 519
MvnI CGCG 2 cut(s) 38, 63
MwoI GCNNNNNNNGC 5 cut(s) 11, 38, 67, 183, 469
NaeI GCCGGC 1 cut(s) 169
NdeII GATC 2 cut(s) 105, 692
NgoMIV GCCGGC 1 cut(s) 167
NheI GCTAGC 2 cut(s) 368, 655
NlaIII CATG 2 cut(s) 476, 640
NspI RCATGY 2 cut(s) 476, 640
OliI CACNNNNGTG 1 cut(s) 680
PciSI GCTCTTC 1 cut(s) 606
PcsI WCGNNNNNNNCGW 1 cut(s) 566
PdiI GCCGGC 1 cut(s) 169
PfeI GAWTC 1 cut(s) 425
PflFI GACNNNGTC 1 cut(s) 26
PkrI GCNGC 7 cut(s) 16, 34, 37, 40, 60, 76, 674
Psp124BI GAGCTC 1 cut(s) 465
PspPI GGNCC 1 cut(s) 40
PstI CTGCAG 2 cut(s) 578, 646
PstNI CAGNNNCTG 1 cut(s) 143
PsuI RGATCY 2 cut(s) 105, 692
PsyI GACNNNGTC 1 cut(s) 26
PvuII CAGCTG 1 cut(s) 70
RsaI GTAC 2 cut(s) 161, 300
RsaNI GTAC 2 cut(s) 160, 299
RseI CAYNNNNRTG 1 cut(s) 680
SacI GAGCTC 1 cut(s) 465
SacII CCGCGG 1 cut(s) 39
SapI GCTCTTC 1 cut(s) 606
SatI GCNGC 7 cut(s) 15, 33, 36, 39, 59, 75, 673
Sau3AI GATC 2 cut(s) 105, 692
Sau96I GGNCC 1 cut(s) 40
SduI GDGCHC 3 cut(s) 150, 447, 465
SfaNI GCATC 2 cut(s) 45, 516
SfcI CTRYAG 3 cut(s) 360, 574, 642
Sfr303I CCGCGG 1 cut(s) 39
SgrBI CCGCGG 1 cut(s) 39
SmiMI CAYNNNNRTG 1 cut(s) 680
SmlI CTYRAG 1 cut(s) 497
SmoI CTYRAG 1 cut(s) 497
Sse9I AATT 5 cut(s) 259, 519, 665, 687, 736
SsiI CCGC 5 cut(s) 15, 36, 38, 119, 151
SspI AATATT 1 cut(s) 702
SspMI CTAG 2 cut(s) 369, 656
SstI GAGCTC 1 cut(s) 465
TaaI ACNGT 1 cut(s) 361
TaiI ACGT 2 cut(s) 94, 198
TaqI TCGA 4 cut(s) 21, 210, 651, 663
TasI AATT 5 cut(s) 259, 519, 665, 687, 736
TauI GCSGC 3 cut(s) 17, 38, 41
TfiI GAWTC 1 cut(s) 425
TscAI CASTG 1 cut(s) 421
TseI GCWGC 4 cut(s) 32, 58, 74, 672
TspGWI ACGGA 2 cut(s) 35, 40
TspRI CASTG 1 cut(s) 421
Tth111I GACNNNGTC 1 cut(s) 26
XapI RAATTY 1 cut(s) 259
XceI RCATGY 2 cut(s) 476, 640
XcmI CCANNNNNNNNNTGG 1 cut(s) 310
XspI CTAG 2 cut(s) 369, 656
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.