AT1G14340

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013901
Physical Location & Seq
Forward (+)
4897346 .. 4899035
1690 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G14340.1

Sequence Viewer

Length: 735 bp
ATGGATCATCAATTTGGATATGGTGTTGAAGTTACTGGGTTATCTCCATCTGTTACTCATAATGATCTTATCGATTTCTTCTCTTTCTCTGGTACTATCCAAGATATTGATATTGTCAGGTCGGGTGAGCAAGCTTGTACTGCTTATGTGATGTTTAAGGATTCTTATTCTCAAGAAACTGCTGTTTTACTCACTGGCGCAACGATATTGGATCAGCGTGTTTGTATAACTCGTTGGGGACAACATCACGAAGAGTTCGATTTCTGGAATGCGACTTCGCGAGGTTTTGAAGATGAATCGGACTCACAACATTATGCTCAACGAAGCGAGTTCAACGCTGGAGAAGCAGTGACAAAAGCTCAAGAAGTGGTGAAAATAATGCTTGCCACAGGATTCGTGCTAGGCAAAGACGCTTTAAGCAAAGCTAAAGCCTTTGATGAATCCCACGGCGTATCAGCTGCAGCGGTGGCTAGAGTATCTCAACTAGAACAGAGGATTGGTCTTACTGACAAAATCTTTACCGGACTTGAAGCTGTTAGAATGACTGACCAAAGGTATCATGTTTCAGATACAGCTAAATCAGCTGTCTTTGCCACAGGAAGAACCGCGGCAGCAGCTGCAACTAGTGTTGTCAATAGCAGTTACTTCTCCAGCGGAGCTCTTTGGCTGTCTGGTGCATTAGAGAGAGCTGCTAAAGCCGCATCTGATCTCGGTACCCGCGGCTCAAGGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

244

Amino Acids

26.41

Weight (kDa)

5.35

Isoelectric Point (pI)

34.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 11 - 72 4.4e-08 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013901)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14340
fragaria_vesca FvH4_4g31610 FvH4_4g31610
malus_domestica MD13G1074500.v1.1 MD16G1075800.v1.1
prunus_persica Prupe.1G271600_v2.0.a1 Prupe.1G271600_v2.0.a1
pyrus_communis pycom16g06570
rosa_chinensis RchiOBHm_Chr4g0440121
rosa_laevigata RLG00000006204
rosa_multiflora Rmu_sc0001685.1_g000017
rosa_roxburghii Rroxscaffold_5G00381050
rosa_rugosa Rorug04G0324400
rosa_samantha Rh4AG375300 Rh4CG402100 Rh4DG381800
rosa_wichuraiana Rw4G032110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 713
AccB1I GGYRCC 1 cut(s) 713
AccII CGCG 3 cut(s) 280, 608, 720
AciI CCGC 7 cut(s) 464, 606, 608, 654, 699, 718, 720
AclWI GGATC 2 cut(s) 12, 219
AfaI GTAC 3 cut(s) 94, 139, 715
AgsI TTSAA 4 cut(s) 29, 290, 334, 530
AhlI ACTAGT 1 cut(s) 623
AjuI GAANNNNNNNTTGG 2 cut(s) 480, 512
Alw21I GWGCWC 1 cut(s) 661
AlwI GGATC 2 cut(s) 12, 219
AlwNI CAGNNNCTG 1 cut(s) 617
ApeKI GCWGC 6 cut(s) 458, 461, 611, 614, 617, 689
Asp718I GGTACC 1 cut(s) 713
AspLEI GCGC 1 cut(s) 200
AsuHPI GGTGA 2 cut(s) 137, 382
BanI GGYRCC 1 cut(s) 713
BanII GRGCYC 1 cut(s) 661
Bbv12I GWGCWC 1 cut(s) 661
BbvI GCAGC 6 cut(s) 445, 473, 604, 623, 626, 676
BccI CCATC 1 cut(s) 55
BceAI ACGGC 1 cut(s) 463
BcuI ACTAGT 1 cut(s) 623
BfaI CTAG 4 cut(s) 401, 471, 485, 624
BfmI CTRYAG 1 cut(s) 459
BisI GCNGC 9 cut(s) 459, 462, 609, 612, 615, 618, 690, 699, 721
BlsI GCNGC 9 cut(s) 460, 463, 610, 613, 616, 619, 691, 700, 722
BmiI GGNNCC 1 cut(s) 715
BmrI ACTGGG 1 cut(s) 45
BmsI GCATC 1 cut(s) 710
BmuI ACTGGG 1 cut(s) 45
BpmI CTGGAG 2 cut(s) 360, 634
BpuEI CTTGAG 3 cut(s) 156, 345, 709
Bsa29I ATCGAT 1 cut(s) 72
BsaJI CCNNGG 3 cut(s) 445, 606, 718
BsaWI WCCGGW 1 cut(s) 521
BsaXI ACNNNNNCTCC 2 cut(s) 333, 363
Bse1I ACTGG 2 cut(s) 40, 199
BseCI ATCGAT 1 cut(s) 72
BseDI CCNNGG 3 cut(s) 445, 606, 718
BseNI ACTGG 2 cut(s) 40, 199
BseXI GCAGC 6 cut(s) 445, 473, 604, 623, 626, 676
Bsh1236I CGCG 3 cut(s) 280, 608, 720
BshNI GGYRCC 1 cut(s) 713
BshVI ATCGAT 1 cut(s) 72
BsiHKAI GWGCWC 1 cut(s) 661
BsiSI CCGG 1 cut(s) 522
BslFI GGGAC 1 cut(s) 252
BsmFI GGGAC 1 cut(s) 252
BsmI GAATGC 1 cut(s) 274
Bsp1286I GDGCHC 1 cut(s) 661
Bsp143I GATC 4 cut(s) 4, 64, 211, 706
Bsp68I TCGCGA 1 cut(s) 280
BspACI CCGC 7 cut(s) 464, 606, 608, 654, 699, 718, 720
BspDI ATCGAT 1 cut(s) 72
BspFNI CGCG 3 cut(s) 280, 608, 720
BspLI GGNNCC 1 cut(s) 715
BspMAI CTGCAG 1 cut(s) 463
BspPI GGATC 2 cut(s) 12, 219
BspT107I GGYRCC 1 cut(s) 713
BsrI ACTGG 2 cut(s) 40, 199
BssECI CCNNGG 3 cut(s) 445, 606, 718
BssMI GATC 4 cut(s) 4, 64, 211, 706
Bst6I CTCTTC 1 cut(s) 246
BstAPI GCANNNNNTGC 1 cut(s) 617
BstC8I GCNNGC 2 cut(s) 132, 384
BstDSI CCRYGG 3 cut(s) 445, 606, 718
BstFNI CGCG 3 cut(s) 280, 608, 720
BstHHI GCGC 1 cut(s) 200
BstKTI GATC 4 cut(s) 7, 67, 214, 709
BstMBI GATC 4 cut(s) 4, 64, 211, 706
BstMWI GCNNNNNNNGC 9 cut(s) 140, 344, 467, 581, 590, 614, 617, 695, 698
BstSFI CTRYAG 1 cut(s) 459
BstUI CGCG 3 cut(s) 280, 608, 720
BstV1I GCAGC 6 cut(s) 445, 473, 604, 623, 626, 676
Bsu15I ATCGAT 1 cut(s) 72
BsuTUI ATCGAT 1 cut(s) 72
BtgI CCRYGG 3 cut(s) 445, 606, 718
BtsI GCAGTG 1 cut(s) 354
BtsIMutI CAGTG 2 cut(s) 192, 354
BtuMI TCGCGA 1 cut(s) 280
Cac8I GCNNGC 2 cut(s) 132, 384
CaiI CAGNNNCTG 1 cut(s) 617
CfoI GCGC 1 cut(s) 200
Cfr42I CCGCGG 2 cut(s) 609, 721
ClaI ATCGAT 1 cut(s) 72
CseI GACGC 1 cut(s) 419
Csp6I GTAC 3 cut(s) 93, 138, 714
CviAII CATG 1 cut(s) 560
CviQI GTAC 3 cut(s) 93, 138, 714
DpnI GATC 4 cut(s) 6, 66, 213, 708
DpnII GATC 4 cut(s) 4, 64, 211, 706
Eam1104I CTCTTC 1 cut(s) 246
EarI CTCTTC 1 cut(s) 246
Ecl136II GAGCTC 1 cut(s) 659
Eco24I GRGCYC 1 cut(s) 661
Eco53kI GAGCTC 1 cut(s) 659
EcoICRI GAGCTC 1 cut(s) 659
EcoT38I GRGCYC 1 cut(s) 661
FaeI CATG 1 cut(s) 563
FaiI YATR 6 cut(s) 21, 60, 147, 227, 315, 561
FaqI GGGAC 1 cut(s) 252
FatI CATG 1 cut(s) 559
FauI CCCGC 1 cut(s) 725
Fnu4HI GCNGC 9 cut(s) 459, 462, 609, 612, 615, 618, 690, 699, 721
FriOI GRGCYC 1 cut(s) 661
Fsp4HI GCNGC 9 cut(s) 459, 462, 609, 612, 615, 618, 690, 699, 721
FspBI CTAG 4 cut(s) 401, 471, 485, 624
GlaI GCGC 1 cut(s) 199
GluI GCNGC 9 cut(s) 459, 462, 609, 612, 615, 618, 690, 699, 721
GsuI CTGGAG 2 cut(s) 360, 634
HapII CCGG 1 cut(s) 522
HgaI GACGC 1 cut(s) 419
HhaI GCGC 1 cut(s) 200
Hin1II CATG 1 cut(s) 563
Hin6I GCGC 1 cut(s) 198
HinP1I GCGC 1 cut(s) 198
HindIII AAGCTT 1 cut(s) 132
HinfI GANTC 5 cut(s) 161, 296, 302, 393, 440
HpaII CCGG 1 cut(s) 522
HphI GGTGA 2 cut(s) 137, 382
Hpy188I TCNGA 3 cut(s) 301, 568, 706
Hpy188III TCNNGA 5 cut(s) 173, 248, 265, 279, 362
HpyCH4V TGCA 3 cut(s) 461, 620, 677
HpyF10VI GCNNNNNNNGC 9 cut(s) 140, 344, 467, 581, 590, 614, 617, 695, 698
Hsp92II CATG 1 cut(s) 563
HspAI GCGC 1 cut(s) 198
KpnI GGTACC 1 cut(s) 717
KspI CCGCGG 2 cut(s) 609, 721
Kzo9I GATC 4 cut(s) 4, 64, 211, 706
LmnI GCTCC 1 cut(s) 656
Lsp1109I GCAGC 6 cut(s) 445, 473, 604, 623, 626, 676
LweI GCATC 1 cut(s) 710
MaeI CTAG 4 cut(s) 401, 471, 485, 624
MaeIII GTNAC 4 cut(s) 31, 52, 349, 641
MalI GATC 4 cut(s) 6, 66, 213, 708
MboI GATC 4 cut(s) 4, 64, 211, 706
MboII GAAGA 4 cut(s) 70, 263, 302, 612
MhlI GDGCHC 1 cut(s) 661
MluCI AATT 1 cut(s) 11
MlyI GAGTC 1 cut(s) 296
MnlI CCTC 2 cut(s) 275, 486
MseI TTAA 2 cut(s) 156, 416
MspA1I CMGCKG 7 cut(s) 458, 464, 584, 608, 617, 654, 720
MspI CCGG 1 cut(s) 522
Mva1269I GAATGC 1 cut(s) 274
MvnI CGCG 3 cut(s) 280, 608, 720
MwoI GCNNNNNNNGC 9 cut(s) 140, 344, 467, 581, 590, 614, 617, 695, 698
NdeII GATC 4 cut(s) 4, 64, 211, 706
NlaIII CATG 1 cut(s) 563
NlaIV GGNNCC 1 cut(s) 715
NmuCI GTSAC 1 cut(s) 349
NruI TCGCGA 1 cut(s) 280
PcsI WCGNNNNNNNCGW 1 cut(s) 255
PctI GAATGC 1 cut(s) 274
PfeI GAWTC 4 cut(s) 161, 296, 393, 440
PkrI GCNGC 9 cut(s) 460, 463, 610, 613, 616, 619, 691, 700, 722
PleI GAGTC 1 cut(s) 296
PpsI GAGTC 1 cut(s) 296
Psp124BI GAGCTC 1 cut(s) 661
PspN4I GGNNCC 1 cut(s) 715
PstI CTGCAG 1 cut(s) 463
PstNI CAGNNNCTG 1 cut(s) 617
PvuII CAGCTG 3 cut(s) 458, 584, 617
RruI TCGCGA 1 cut(s) 280
RsaI GTAC 3 cut(s) 94, 139, 715
RsaNI GTAC 3 cut(s) 93, 138, 714
SacI GAGCTC 1 cut(s) 661
SacII CCGCGG 2 cut(s) 609, 721
SaqAI TTAA 2 cut(s) 156, 416
SatI GCNGC 9 cut(s) 459, 462, 609, 612, 615, 618, 690, 699, 721
Sau3AI GATC 4 cut(s) 4, 64, 211, 706
SchI GAGTC 1 cut(s) 296
SduI GDGCHC 1 cut(s) 661
SfaNI GCATC 1 cut(s) 710
SfcI CTRYAG 1 cut(s) 459
Sfr303I CCGCGG 2 cut(s) 609, 721
SgrBI CCGCGG 2 cut(s) 609, 721
SmlI CTYRAG 3 cut(s) 171, 360, 724
SmoI CTYRAG 3 cut(s) 171, 360, 724
SpeI ACTAGT 1 cut(s) 623
Sse9I AATT 1 cut(s) 11
SsiI CCGC 7 cut(s) 464, 606, 608, 654, 699, 718, 720
SspMI CTAG 4 cut(s) 401, 471, 485, 624
SstI GAGCTC 1 cut(s) 661
TaqI TCGA 2 cut(s) 72, 258
TasI AATT 1 cut(s) 11
TatI WGTACW 1 cut(s) 137
TauI GCSGC 3 cut(s) 611, 701, 723
TfiI GAWTC 4 cut(s) 161, 296, 393, 440
Tru1I TTAA 2 cut(s) 156, 416
Tru9I TTAA 2 cut(s) 156, 416
TscAI CASTG 2 cut(s) 199, 354
TseFI GTSAC 1 cut(s) 349
TseI GCWGC 6 cut(s) 458, 461, 611, 614, 617, 689
Tsp45I GTSAC 1 cut(s) 349
TspDTI ATGAA 2 cut(s) 309, 453
TspRI CASTG 2 cut(s) 199, 354
XspI CTAG 4 cut(s) 401, 471, 485, 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.