Rh4AG375300

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0013901
Physical Location & Seq
Forward (+)
68247754 .. 68250221
2468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG375300.1

Sequence Viewer

Length: 546 bp
ATGGGTGCCACTATCATAGATCAACCTGTGTGCATAACCCGCTGGGGGCATTATCAAGATGAATTTGACTTTTGGAACACGCCTTCATCCAGGGATGATGAAGAAACTCATTCAACTCATCCACCAACAAGCCACAATGTACCTAGTGCTGGAGAAGTGGCATCTGTTGCACAAGAAGTAGTCATGACCATGTTATCCAAGGGATATGTGCTGGGAAAAGATGCATTAGCCCAGGCGAAATCATTTGACGAGTCTCATCAATATTCAGCGACTGCAGCAGCCAGGGTTGCTGAGCTGAGTGAGAGATATGGCCTCACTGATAAGTTCTGCGCAGGTGTTGAAGCTGTTAAATCTGTGGATGAGCGATACCATGTTTCAGACCTCACCAAATCAGCGATATCAGAGACTGGAAGAAAAGCCGCAGAAGCTGCAAATGCTGTGGTAAACAGCAGCTACTTTTCTAAAGGAGCCCTTTGGATGTCAGGTGCTCTAAACCGAGCCGCCAAAGCTGCAGCTGATTTGGGCAGTCGTGGTGTTACGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

181

Amino Acids

19.41

Weight (kDa)

5.47

Isoelectric Point (pI)

31.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013901)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14340
fragaria_vesca FvH4_4g31610 FvH4_4g31610
malus_domestica MD13G1074500.v1.1 MD16G1075800.v1.1
prunus_persica Prupe.1G271600_v2.0.a1 Prupe.1G271600_v2.0.a1
pyrus_communis pycom16g06570
rosa_chinensis RchiOBHm_Chr4g0440121
rosa_laevigata RLG00000006204
rosa_multiflora Rmu_sc0001685.1_g000017
rosa_roxburghii Rroxscaffold_5G00381050
rosa_rugosa Rorug04G0324400
rosa_samantha Rh4AG375300 Rh4CG402100 Rh4DG381800
rosa_wichuraiana Rw4G032110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 323
Acc16I TGCGCA 1 cut(s) 331
Acc36I ACCTGC 1 cut(s) 323
AccB1I GGYRCC 1 cut(s) 5
AciI CCGC 3 cut(s) 40, 420, 501
AcsI RAATTY 1 cut(s) 62
AfaI GTAC 1 cut(s) 141
AfiI CCNNNNNNNGG 2 cut(s) 45, 149
AgsI TTSAA 2 cut(s) 114, 341
AjnI CCWGG 3 cut(s) 89, 231, 281
AluBI AGCT 6 cut(s) 295, 344, 428, 453, 509, 515
AluI AGCT 6 cut(s) 295, 344, 428, 453, 509, 515
Alw21I GWGCWC 1 cut(s) 490
Alw26I GTCTC 2 cut(s) 258, 398
AlwNI CAGNNNCTG 3 cut(s) 272, 407, 428
AoxI GGCC 1 cut(s) 310
ApeKI GCWGC 6 cut(s) 275, 278, 428, 450, 509, 512
ApoI RAATTY 1 cut(s) 62
AspLEI GCGC 1 cut(s) 332
AsuHPI GGTGA 1 cut(s) 376
BanI GGYRCC 1 cut(s) 5
BanII GRGCYC 1 cut(s) 472
Bbv12I GWGCWC 1 cut(s) 490
BbvI GCAGC 6 cut(s) 287, 290, 415, 462, 496, 524
BciT130I CCWGG 3 cut(s) 91, 233, 283
BcoDI GTCTC 2 cut(s) 258, 398
BfaI CTAG 1 cut(s) 144
BfmI CTRYAG 2 cut(s) 273, 510
BfuAI ACCTGC 1 cut(s) 323
BisI GCNGC 8 cut(s) 276, 279, 420, 429, 451, 501, 510, 513
BlpI GCTNAGC 1 cut(s) 291
BlsI GCNGC 8 cut(s) 277, 280, 421, 430, 452, 502, 511, 514
Bme1390I CCNGG 3 cut(s) 91, 233, 283
BmiI GGNNCC 2 cut(s) 7, 469
BmrFI CCNGG 3 cut(s) 91, 233, 283
BmsI GCATC 2 cut(s) 170, 211
BpmI CTGGAG 1 cut(s) 171
Bpu1102I GCTNAGC 1 cut(s) 291
BsaJI CCNNGG 4 cut(s) 90, 198, 231, 282
Bsc4I CCNNNNNNNGG 2 cut(s) 45, 149
Bse1I ACTGG 1 cut(s) 412
BseBI CCWGG 3 cut(s) 91, 233, 283
BseDI CCNNGG 4 cut(s) 90, 198, 231, 282
BseGI GGATG 5 cut(s) 86, 100, 118, 364, 483
BseLI CCNNNNNNNGG 2 cut(s) 45, 149
BseMII CTCAG 2 cut(s) 282, 287
BseNI ACTGG 1 cut(s) 412
BseXI GCAGC 6 cut(s) 287, 290, 415, 462, 496, 524
BseYI CCCAGC 2 cut(s) 42, 211
BshFI GGCC 1 cut(s) 312
BshNI GGYRCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 490
BslI CCNNNNNNNGG 2 cut(s) 45, 149
BsmAI GTCTC 2 cut(s) 258, 398
BsnI GGCC 1 cut(s) 312
Bsp1286I GDGCHC 2 cut(s) 472, 490
Bsp143I GATC 1 cut(s) 19
Bsp1720I GCTNAGC 1 cut(s) 291
BspACI CCGC 3 cut(s) 40, 420, 501
BspANI GGCC 1 cut(s) 312
BspCNI CTCAG 2 cut(s) 283, 288
BspHI TCATGA 1 cut(s) 183
BspLI GGNNCC 2 cut(s) 7, 469
BspMAI CTGCAG 2 cut(s) 277, 514
BspMI ACCTGC 1 cut(s) 323
BspT107I GGYRCC 1 cut(s) 5
BsrI ACTGG 1 cut(s) 412
BssECI CCNNGG 4 cut(s) 90, 198, 231, 282
BssMI GATC 1 cut(s) 19
BssT1I CCWWGG 1 cut(s) 198
Bst2UI CCWGG 3 cut(s) 91, 233, 283
BstAPI GCANNNNNTGC 2 cut(s) 167, 428
BstDEI CTNAG 2 cut(s) 291, 296
BstF5I GGATG 5 cut(s) 86, 100, 118, 364, 483
BstHHI GCGC 1 cut(s) 332
BstKTI GATC 1 cut(s) 22
BstMAI GTCTC 2 cut(s) 258, 398
BstMBI GATC 1 cut(s) 19
BstMWI GCNNNNNNNGC 9 cut(s) 39, 167, 275, 287, 425, 428, 434, 506, 509
BstNI CCWGG 3 cut(s) 91, 233, 283
BstSCI CCNGG 3 cut(s) 89, 231, 281
BstSFI CTRYAG 2 cut(s) 273, 510
BstV1I GCAGC 6 cut(s) 287, 290, 415, 462, 496, 524
BsuRI GGCC 1 cut(s) 312
BtsCI GGATG 5 cut(s) 86, 100, 118, 364, 483
BtsIMutI CAGTG 1 cut(s) 315
BveI ACCTGC 1 cut(s) 323
CaiI CAGNNNCTG 3 cut(s) 272, 407, 428
CciI TCATGA 1 cut(s) 183
CfoI GCGC 1 cut(s) 332
Csp6I GTAC 1 cut(s) 140
CspCI CAANNNNNGTGG 2 cut(s) 420, 455
CviAII CATG 3 cut(s) 184, 190, 371
CviQI GTAC 1 cut(s) 140
DdeI CTNAG 2 cut(s) 291, 296
DpnI GATC 1 cut(s) 21
DpnII GATC 1 cut(s) 19
Eco130I CCWWGG 1 cut(s) 198
Eco24I GRGCYC 1 cut(s) 472
Eco32I GATATC 1 cut(s) 399
EcoRII CCWGG 3 cut(s) 89, 231, 281
EcoRV GATATC 1 cut(s) 399
EcoT14I CCWWGG 1 cut(s) 198
EcoT22I ATGCAT 1 cut(s) 226
EcoT38I GRGCYC 1 cut(s) 472
ErhI CCWWGG 1 cut(s) 198
FaeI CATG 3 cut(s) 187, 193, 374
FaiI YATR 7 cut(s) 17, 35, 185, 191, 207, 309, 372
FalI AAGNNNNNCTT 2 cut(s) 456, 488
FatI CATG 3 cut(s) 183, 189, 370
FauI CCCGC 1 cut(s) 47
Fnu4HI GCNGC 8 cut(s) 276, 279, 420, 429, 451, 501, 510, 513
FokI GGATG 5 cut(s) 73, 105, 107, 371, 490
FriOI GRGCYC 1 cut(s) 472
Fsp4HI GCNGC 8 cut(s) 276, 279, 420, 429, 451, 501, 510, 513
FspBI CTAG 1 cut(s) 144
FspI TGCGCA 1 cut(s) 331
GlaI GCGC 1 cut(s) 331
GluI GCNGC 8 cut(s) 276, 279, 420, 429, 451, 501, 510, 513
GsaI CCCAGC 2 cut(s) 46, 215
GsuI CTGGAG 1 cut(s) 171
HaeIII GGCC 1 cut(s) 312
HhaI GCGC 1 cut(s) 332
Hin1II CATG 3 cut(s) 187, 193, 374
Hin6I GCGC 1 cut(s) 330
HinP1I GCGC 1 cut(s) 330
HinfI GANTC 1 cut(s) 251
HphI GGTGA 1 cut(s) 376
Hpy166II GTNNAC 1 cut(s) 445
Hpy188I TCNGA 2 cut(s) 379, 403
Hpy188III TCNNGA 2 cut(s) 56, 184
Hpy8I GTNNAC 1 cut(s) 445
HpyAV CCTTC 1 cut(s) 93
HpyCH4V TGCA 6 cut(s) 33, 170, 224, 275, 431, 512
HpyF10VI GCNNNNNNNGC 9 cut(s) 39, 167, 275, 287, 425, 428, 434, 506, 509
HpyF3I CTNAG 2 cut(s) 291, 296
Hsp92II CATG 3 cut(s) 187, 193, 374
HspAI GCGC 1 cut(s) 330
Kzo9I GATC 1 cut(s) 19
LmnI GCTCC 1 cut(s) 467
Lsp1109I GCAGC 6 cut(s) 287, 290, 415, 462, 496, 524
LweI GCATC 2 cut(s) 170, 211
MaeI CTAG 1 cut(s) 144
MaeIII GTNAC 1 cut(s) 535
MalI GATC 1 cut(s) 21
MboI GATC 1 cut(s) 19
MboII GAAGA 2 cut(s) 113, 423
MhlI GDGCHC 2 cut(s) 472, 490
MluCI AATT 1 cut(s) 62
MlyI GAGTC 1 cut(s) 260
MnlI CCTC 2 cut(s) 323, 392
Mph1103I ATGCAT 1 cut(s) 226
MseI TTAA 1 cut(s) 348
MslI CAYNNNNRTG 1 cut(s) 188
MspA1I CMGCKG 2 cut(s) 42, 515
MspR9I CCNGG 3 cut(s) 91, 233, 283
MvaI CCWGG 3 cut(s) 91, 233, 283
MwoI GCNNNNNNNGC 9 cut(s) 39, 167, 275, 287, 425, 428, 434, 506, 509
NdeII GATC 1 cut(s) 19
NlaIII CATG 3 cut(s) 187, 193, 374
NlaIV GGNNCC 2 cut(s) 7, 469
NsbI TGCGCA 1 cut(s) 331
NsiI ATGCAT 1 cut(s) 226
PagI TCATGA 1 cut(s) 183
PaqCI CACCTGC 1 cut(s) 323
PkrI GCNGC 8 cut(s) 277, 280, 421, 430, 452, 502, 511, 514
PleI GAGTC 1 cut(s) 259
PpsI GAGTC 1 cut(s) 259
Psp6I CCWGG 3 cut(s) 89, 231, 281
PspFI CCCAGC 2 cut(s) 42, 211
PspGI CCWGG 3 cut(s) 89, 231, 281
PspN4I GGNNCC 2 cut(s) 7, 469
PstI CTGCAG 2 cut(s) 277, 514
PstNI CAGNNNCTG 3 cut(s) 272, 407, 428
PvuII CAGCTG 1 cut(s) 515
RsaI GTAC 1 cut(s) 141
RsaNI GTAC 1 cut(s) 140
RseI CAYNNNNRTG 1 cut(s) 188
SaqAI TTAA 1 cut(s) 348
SatI GCNGC 8 cut(s) 276, 279, 420, 429, 451, 501, 510, 513
Sau3AI GATC 1 cut(s) 19
SchI GAGTC 1 cut(s) 260
ScrFI CCNGG 3 cut(s) 91, 233, 283
SduI GDGCHC 2 cut(s) 472, 490
SfaNI GCATC 2 cut(s) 170, 211
SfcI CTRYAG 2 cut(s) 273, 510
SmiMI CAYNNNNRTG 1 cut(s) 188
Sse9I AATT 1 cut(s) 62
SsiI CCGC 3 cut(s) 40, 420, 501
SspI AATATT 1 cut(s) 263
SspMI CTAG 1 cut(s) 144
StyD4I CCNGG 3 cut(s) 89, 231, 281
StyI CCWWGG 1 cut(s) 198
TasI AATT 1 cut(s) 62
TauI GCSGC 2 cut(s) 422, 503
Tru1I TTAA 1 cut(s) 348
Tru9I TTAA 1 cut(s) 348
TscAI CASTG 1 cut(s) 322
TseI GCWGC 6 cut(s) 275, 278, 428, 450, 509, 512
TspDTI ATGAA 3 cut(s) 75, 75, 114
TspRI CASTG 1 cut(s) 322
XapI RAATTY 1 cut(s) 62
XspI CTAG 1 cut(s) 144
Zsp2I ATGCAT 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.