FvH4_4g31610

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0013901
Physical Location & Seq
Forward (+)
30682646 .. 30684945
2300 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g31610.t2

Sequence Viewer

Length: 732 bp
ATGAATCACGGTGGATATGCCGTAGAAGTGACCGGTCTGTCTCCTAGAGCTACCGAGAGGGATGTCTATGATTTCTTCTCCTTCTCTGGCTCAATCGAAAGCGTTGAGATCGTCAGATCCGGCGACTGTGCATGTACTGCCTATGTGACGTTCAAGGATTCGTATTCGCAGGAGACTGCTTGCTTGCTCAGTGGTGCCACAATCATAGATCAACCTGTGTGCATAACTCGCTGGGGGCATTATCAAGATGAATTTGACTTTTGGAACAGGCCTCAAGCAAGGGACGATGAAGAAACTCATTCAACTCCACCAACAAGCCAAAATGTTCCTAGTGCTGGAGAAGTGGTGTCTGTCGCTCAGGAAGTAGTCATGACCATGTTATCCAAGGGATATGTGCTGGGAAAAGATGCATTAGCCGAGGCGAAATCATTTGATGAGTCTCATCAATATTCAGCGACTGCAGCAGCCAGGGTTGCTGAGCTGAGTGAGAGACTTGGTCTCGCTGATAAGTTCTGTGCAGGTGTAGAAGCTGTTAAATCTGTGGATGAGCGGTACCATGTATCAGAGCTCACCAAATCCGCGCTATCGGAGACTGGAAGGAAAGCCGCAGAAGCTGCAAACGCTGTGGTAAACAGCAGCTACTTTTCTAAAGGAGCCCTTTGGATGTCAGGTGCTCTAGACCGAGCTGCTAAAGCTGCAGCTGATTGGGGCAGGCATGGTGGCACGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

244

Amino Acids

26.2

Weight (kDa)

4.93

Isoelectric Point (pI)

41.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013901)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14340
fragaria_vesca FvH4_4g31610 FvH4_4g31610
malus_domestica MD13G1074500.v1.1 MD16G1075800.v1.1
prunus_persica Prupe.1G271600_v2.0.a1 Prupe.1G271600_v2.0.a1
pyrus_communis pycom16g06570
rosa_chinensis RchiOBHm_Chr4g0440121
rosa_laevigata RLG00000006204
rosa_multiflora Rmu_sc0001685.1_g000017
rosa_roxburghii Rroxscaffold_5G00381050
rosa_rugosa Rorug04G0324400
rosa_samantha Rh4AG375300 Rh4CG402100 Rh4DG381800
rosa_wichuraiana Rw4G032110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 509
AasI GACNNNNNNGTC 1 cut(s) 37
Acc36I ACCTGC 1 cut(s) 509
Acc65I GGTACC 1 cut(s) 552
AccB1I GGYRCC 2 cut(s) 194, 552
AccBSI CCGCTC 1 cut(s) 550
AccII CGCG 1 cut(s) 581
AciI CCGC 3 cut(s) 550, 579, 606
AclWI GGATC 1 cut(s) 111
AcsI RAATTY 1 cut(s) 251
AfaI GTAC 2 cut(s) 136, 554
AfiI CCNNNNNNNGG 1 cut(s) 335
AgeI ACCGGT 1 cut(s) 32
AgsI TTSAA 2 cut(s) 154, 303
AjnI CCWGG 1 cut(s) 467
AluBI AGCT 9 cut(s) 50, 481, 530, 568, 614, 639, 686, 695, 701
AluI AGCT 9 cut(s) 50, 481, 530, 568, 614, 639, 686, 695, 701
Alw21I GWGCWC 2 cut(s) 570, 676
Alw26I GTCTC 6 cut(s) 45, 167, 444, 484, 503, 584
AlwI GGATC 1 cut(s) 111
AlwNI CAGNNNCTG 2 cut(s) 458, 614
AoxI GGCC 1 cut(s) 269
ApeKI GCWGC 7 cut(s) 461, 464, 614, 636, 686, 695, 698
ApoI RAATTY 1 cut(s) 251
AsiGI ACCGGT 1 cut(s) 32
Asp718I GGTACC 1 cut(s) 552
AspLEI GCGC 1 cut(s) 583
AsuHPI GGTGA 1 cut(s) 562
BanI GGYRCC 2 cut(s) 194, 552
BanII GRGCYC 2 cut(s) 570, 658
Bbv12I GWGCWC 2 cut(s) 570, 676
BbvI GCAGC 7 cut(s) 473, 476, 601, 648, 673, 682, 710
BceAI ACGGC 1 cut(s) 5
BciT130I CCWGG 1 cut(s) 469
BcoDI GTCTC 6 cut(s) 45, 167, 444, 484, 503, 584
BfaI CTAG 3 cut(s) 45, 330, 677
BfmI CTRYAG 2 cut(s) 459, 696
BfuAI ACCTGC 1 cut(s) 509
BisI GCNGC 8 cut(s) 462, 465, 606, 615, 637, 687, 696, 699
BlpI GCTNAGC 1 cut(s) 477
BlsI GCNGC 8 cut(s) 463, 466, 607, 616, 638, 688, 697, 700
Bme1390I CCNGG 1 cut(s) 469
BmiI GGNNCC 3 cut(s) 196, 554, 655
BmrFI CCNGG 1 cut(s) 469
BmsI GCATC 1 cut(s) 397
BpmI CTGGAG 1 cut(s) 357
Bpu10I CCTNAGC 1 cut(s) 357
Bpu1102I GCTNAGC 1 cut(s) 477
BpuEI CTTGAG 1 cut(s) 258
BsaI GGTCTC 1 cut(s) 503
BsaJI CCNNGG 3 cut(s) 384, 417, 468
BsaWI WCCGGW 1 cut(s) 32
BsaXI ACNNNNNCTCC 2 cut(s) 330, 360
Bsc4I CCNNNNNNNGG 1 cut(s) 335
Bse118I RCCGGY 1 cut(s) 32
Bse1I ACTGG 1 cut(s) 598
BseBI CCWGG 1 cut(s) 469
BseDI CCNNGG 3 cut(s) 384, 417, 468
BseGI GGATG 3 cut(s) 67, 550, 669
BseLI CCNNNNNNNGG 1 cut(s) 335
BseMII CTCAG 4 cut(s) 202, 371, 468, 473
BseNI ACTGG 1 cut(s) 598
BseXI GCAGC 7 cut(s) 473, 476, 601, 648, 673, 682, 710
BseYI CCCAGC 2 cut(s) 231, 397
BsgI GTGCAG 1 cut(s) 537
Bsh1236I CGCG 1 cut(s) 581
BshFI GGCC 1 cut(s) 271
BshNI GGYRCC 2 cut(s) 194, 552
BshTI ACCGGT 1 cut(s) 32
BsiHKAI GWGCWC 2 cut(s) 570, 676
BsiSI CCGG 2 cut(s) 33, 120
BslFI GGGAC 1 cut(s) 296
BslI CCNNNNNNNGG 1 cut(s) 335
BsmAI GTCTC 6 cut(s) 45, 167, 444, 484, 503, 584
BsmFI GGGAC 1 cut(s) 296
BsnI GGCC 1 cut(s) 271
Bso31I GGTCTC 1 cut(s) 503
Bsp1286I GDGCHC 3 cut(s) 570, 658, 676
Bsp143I GATC 3 cut(s) 108, 116, 208
Bsp1720I GCTNAGC 1 cut(s) 477
BspACI CCGC 3 cut(s) 550, 579, 606
BspANI GGCC 1 cut(s) 271
BspCNI CTCAG 4 cut(s) 201, 370, 469, 474
BspFNI CGCG 1 cut(s) 581
BspHI TCATGA 1 cut(s) 369
BspLI GGNNCC 3 cut(s) 196, 554, 655
BspMAI CTGCAG 2 cut(s) 463, 700
BspMI ACCTGC 1 cut(s) 509
BspPI GGATC 1 cut(s) 111
BspT107I GGYRCC 2 cut(s) 194, 552
BspTNI GGTCTC 1 cut(s) 503
BsrBI CCGCTC 1 cut(s) 550
BsrFI RCCGGY 1 cut(s) 32
BsrI ACTGG 1 cut(s) 598
BssAI RCCGGY 1 cut(s) 32
BssECI CCNNGG 3 cut(s) 384, 417, 468
BssMI GATC 3 cut(s) 108, 116, 208
BssT1I CCWWGG 1 cut(s) 384
Bst2UI CCWGG 1 cut(s) 469
Bst4CI ACNGT 2 cut(s) 11, 128
BstAPI GCANNNNNTGC 2 cut(s) 137, 614
BstC8I GCNNGC 4 cut(s) 181, 185, 713, 725
BstDEI CTNAG 4 cut(s) 188, 357, 477, 482
BstF5I GGATG 3 cut(s) 67, 550, 669
BstFNI CGCG 1 cut(s) 581
BstHHI GCGC 1 cut(s) 583
BstKTI GATC 3 cut(s) 111, 119, 211
BstMAI GTCTC 6 cut(s) 45, 167, 444, 484, 503, 584
BstMBI GATC 3 cut(s) 108, 116, 208
BstMWI GCNNNNNNNGC 9 cut(s) 137, 228, 461, 473, 611, 614, 620, 692, 695
BstNI CCWGG 1 cut(s) 469
BstNSI RCATGY 1 cut(s) 135
BstSCI CCNGG 1 cut(s) 467
BstSFI CTRYAG 2 cut(s) 459, 696
BstUI CGCG 1 cut(s) 581
BstV1I GCAGC 7 cut(s) 473, 476, 601, 648, 673, 682, 710
BstX2I RGATCY 1 cut(s) 116
BstYI RGATCY 1 cut(s) 116
BsuRI GGCC 1 cut(s) 271
BtsCI GGATG 3 cut(s) 67, 550, 669
BtsIMutI CAGTG 1 cut(s) 196
BveI ACCTGC 1 cut(s) 509
Cac8I GCNNGC 4 cut(s) 181, 185, 713, 725
CaiI CAGNNNCTG 2 cut(s) 458, 614
CciI TCATGA 1 cut(s) 369
CfoI GCGC 1 cut(s) 583
Cfr10I RCCGGY 1 cut(s) 32
Csp6I GTAC 2 cut(s) 135, 553
CspAI ACCGGT 1 cut(s) 32
CspCI CAANNNNNGTGG 2 cut(s) 606, 641
CviAII CATG 5 cut(s) 132, 370, 376, 557, 716
CviQI GTAC 2 cut(s) 135, 553
DdeI CTNAG 4 cut(s) 188, 357, 477, 482
DpnI GATC 3 cut(s) 110, 118, 210
DpnII GATC 3 cut(s) 108, 116, 208
DrdI GACNNNNNNGTC 1 cut(s) 37
DseDI GACNNNNNNGTC 1 cut(s) 37
Ecl136II GAGCTC 1 cut(s) 568
Eco130I CCWWGG 1 cut(s) 384
Eco147I AGGCCT 1 cut(s) 271
Eco24I GRGCYC 2 cut(s) 570, 658
Eco31I GGTCTC 1 cut(s) 503
Eco53kI GAGCTC 1 cut(s) 568
EcoICRI GAGCTC 1 cut(s) 568
EcoRII CCWGG 1 cut(s) 467
EcoT14I CCWWGG 1 cut(s) 384
EcoT22I ATGCAT 1 cut(s) 412
EcoT38I GRGCYC 2 cut(s) 570, 658
ErhI CCWWGG 1 cut(s) 384
FaeI CATG 5 cut(s) 135, 373, 379, 560, 719
FalI AAGNNNNNCTT 2 cut(s) 642, 674
FaqI GGGAC 1 cut(s) 296
FatI CATG 5 cut(s) 131, 369, 375, 556, 715
Fnu4HI GCNGC 8 cut(s) 462, 465, 606, 615, 637, 687, 696, 699
FokI GGATG 3 cut(s) 74, 557, 676
FriOI GRGCYC 2 cut(s) 570, 658
Fsp4HI GCNGC 8 cut(s) 462, 465, 606, 615, 637, 687, 696, 699
FspBI CTAG 3 cut(s) 45, 330, 677
GlaI GCGC 1 cut(s) 582
GluI GCNGC 8 cut(s) 462, 465, 606, 615, 637, 687, 696, 699
GsaI CCCAGC 2 cut(s) 235, 401
GsuI CTGGAG 1 cut(s) 357
HaeIII GGCC 1 cut(s) 271
HapII CCGG 2 cut(s) 33, 120
HhaI GCGC 1 cut(s) 583
Hin1II CATG 5 cut(s) 135, 373, 379, 560, 719
Hin6I GCGC 1 cut(s) 581
HinP1I GCGC 1 cut(s) 581
HinfI GANTC 3 cut(s) 4, 158, 437
HpaII CCGG 2 cut(s) 33, 120
HphI GGTGA 1 cut(s) 562
Hpy166II GTNNAC 1 cut(s) 631
Hpy188I TCNGA 3 cut(s) 116, 565, 589
Hpy188III TCNNGA 4 cut(s) 245, 359, 370, 677
Hpy8I GTNNAC 1 cut(s) 631
HpyAV CCTTC 2 cut(s) 91, 591
HpyCH4III ACNGT 2 cut(s) 11, 128
HpyCH4IV ACGT 1 cut(s) 149
HpyCH4V TGCA 7 cut(s) 131, 222, 410, 461, 518, 617, 698
HpyF10VI GCNNNNNNNGC 9 cut(s) 137, 228, 461, 473, 611, 614, 620, 692, 695
HpyF3I CTNAG 4 cut(s) 188, 357, 477, 482
HpySE526I ACGT 1 cut(s) 149
Hsp92II CATG 5 cut(s) 135, 373, 379, 560, 719
HspAI GCGC 1 cut(s) 581
KpnI GGTACC 1 cut(s) 556
Kzo9I GATC 3 cut(s) 108, 116, 208
LmnI GCTCC 1 cut(s) 653
Lsp1109I GCAGC 7 cut(s) 473, 476, 601, 648, 673, 682, 710
LweI GCATC 1 cut(s) 397
MaeI CTAG 3 cut(s) 45, 330, 677
MaeII ACGT 1 cut(s) 149
MaeIII GTNAC 2 cut(s) 28, 145
MalI GATC 3 cut(s) 110, 118, 210
MbiI CCGCTC 1 cut(s) 550
MboI GATC 3 cut(s) 108, 116, 208
MboII GAAGA 2 cut(s) 67, 302
MflI RGATCY 1 cut(s) 116
MhlI GDGCHC 3 cut(s) 570, 658, 676
MluCI AATT 1 cut(s) 251
MlyI GAGTC 1 cut(s) 446
MnlI CCTC 3 cut(s) 51, 282, 412
Mph1103I ATGCAT 1 cut(s) 412
MseI TTAA 1 cut(s) 534
MslI CAYNNNNRTG 1 cut(s) 374
MspA1I CMGCKG 1 cut(s) 701
MspI CCGG 2 cut(s) 33, 120
MspR9I CCNGG 1 cut(s) 469
MvaI CCWGG 1 cut(s) 469
MvnI CGCG 1 cut(s) 581
MwoI GCNNNNNNNGC 9 cut(s) 137, 228, 461, 473, 611, 614, 620, 692, 695
NdeII GATC 3 cut(s) 108, 116, 208
NlaIII CATG 5 cut(s) 135, 373, 379, 560, 719
NlaIV GGNNCC 3 cut(s) 196, 554, 655
NmeAIII GCCGAG 1 cut(s) 442
NmuCI GTSAC 2 cut(s) 28, 145
NsiI ATGCAT 1 cut(s) 412
NspI RCATGY 1 cut(s) 135
PagI TCATGA 1 cut(s) 369
PaqCI CACCTGC 1 cut(s) 509
PceI AGGCCT 1 cut(s) 271
PfeI GAWTC 2 cut(s) 4, 158
PflFI GACNNNGTC 1 cut(s) 495
PinAI ACCGGT 1 cut(s) 32
PkrI GCNGC 8 cut(s) 463, 466, 607, 616, 638, 688, 697, 700
PleI GAGTC 1 cut(s) 445
PpsI GAGTC 1 cut(s) 445
Psp124BI GAGCTC 1 cut(s) 570
Psp6I CCWGG 1 cut(s) 467
PspFI CCCAGC 2 cut(s) 231, 397
PspGI CCWGG 1 cut(s) 467
PspN4I GGNNCC 3 cut(s) 196, 554, 655
PstI CTGCAG 2 cut(s) 463, 700
PstNI CAGNNNCTG 2 cut(s) 458, 614
PsuI RGATCY 1 cut(s) 116
PsyI GACNNNGTC 1 cut(s) 495
PvuII CAGCTG 1 cut(s) 701
RsaI GTAC 2 cut(s) 136, 554
RsaNI GTAC 2 cut(s) 135, 553
RseI CAYNNNNRTG 1 cut(s) 374
SacI GAGCTC 1 cut(s) 570
SaqAI TTAA 1 cut(s) 534
SatI GCNGC 8 cut(s) 462, 465, 606, 615, 637, 687, 696, 699
Sau3AI GATC 3 cut(s) 108, 116, 208
SchI GAGTC 1 cut(s) 446
ScrFI CCNGG 1 cut(s) 469
SduI GDGCHC 3 cut(s) 570, 658, 676
SfaNI GCATC 1 cut(s) 397
SfcI CTRYAG 2 cut(s) 459, 696
SmiMI CAYNNNNRTG 1 cut(s) 374
SmlI CTYRAG 1 cut(s) 273
SmoI CTYRAG 1 cut(s) 273
Sse9I AATT 1 cut(s) 251
SseBI AGGCCT 1 cut(s) 271
SsiI CCGC 3 cut(s) 550, 579, 606
SspI AATATT 1 cut(s) 449
SspMI CTAG 3 cut(s) 45, 330, 677
SstI GAGCTC 1 cut(s) 570
StuI AGGCCT 1 cut(s) 271
StyD4I CCNGG 1 cut(s) 467
StyI CCWWGG 1 cut(s) 384
TaaI ACNGT 2 cut(s) 11, 128
TaiI ACGT 1 cut(s) 152
TaqI TCGA 1 cut(s) 96
TaqII GACCGA 1 cut(s) 696
TasI AATT 1 cut(s) 251
TatI WGTACW 1 cut(s) 134
TauI GCSGC 1 cut(s) 608
TfiI GAWTC 2 cut(s) 4, 158
Tru1I TTAA 1 cut(s) 534
Tru9I TTAA 1 cut(s) 534
TscAI CASTG 1 cut(s) 196
TseFI GTSAC 2 cut(s) 28, 145
TseI GCWGC 7 cut(s) 461, 464, 614, 636, 686, 695, 698
Tsp45I GTSAC 2 cut(s) 28, 145
TspDTI ATGAA 3 cut(s) 17, 264, 303
TspRI CASTG 1 cut(s) 196
Tth111I GACNNNGTC 1 cut(s) 495
XapI RAATTY 1 cut(s) 251
XbaI TCTAGA 1 cut(s) 676
XceI RCATGY 1 cut(s) 135
XspI CTAG 3 cut(s) 45, 330, 677
Zsp2I ATGCAT 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.