RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G14340 |
| fragaria_vesca | FvH4_4g31610 FvH4_4g31610 |
| malus_domestica | MD13G1074500.v1.1 MD16G1075800.v1.1 |
| prunus_persica | Prupe.1G271600_v2.0.a1 Prupe.1G271600_v2.0.a1 |
| pyrus_communis | pycom16g06570 |
| rosa_chinensis | RchiOBHm_Chr4g0440121 |
| rosa_laevigata | RLG00000006204 |
| rosa_multiflora | Rmu_sc0001685.1_g000017 |
| rosa_roxburghii | Rroxscaffold_5G00381050 |
| rosa_rugosa | Rorug04G0324400 |
| rosa_samantha | Rh4AG375300 Rh4CG402100 Rh4DG381800 |
| rosa_wichuraiana | Rw4G032110 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 376 |
| AccB1I | GGYRCC | 1 cut(s) | 194 |
| AciI | CCGC | 1 cut(s) | 229 |
| AclWI | GGATC | 1 cut(s) | 111 |
| AcoI | YGGCCR | 2 cut(s) | 411, 576 |
| AcsI | RAATTY | 1 cut(s) | 251 |
| AfaI | GTAC | 1 cut(s) | 136 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 234, 308, 332, 448 |
| AgsI | TTSAA | 1 cut(s) | 154 |
| AjnI | CCWGG | 1 cut(s) | 272 |
| AluBI | AGCT | 7 cut(s) | 215, 464, 527, 611, 636, 653, 686 |
| AluI | AGCT | 7 cut(s) | 215, 464, 527, 611, 636, 653, 686 |
| Alw21I | GWGCWC | 1 cut(s) | 655 |
| Alw26I | GTCTC | 3 cut(s) | 45, 167, 581 |
| AlwI | GGATC | 1 cut(s) | 111 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 611 |
| AoxI | GGCC | 4 cut(s) | 269, 411, 493, 576 |
| ApeKI | GCWGC | 7 cut(s) | 458, 461, 602, 611, 633, 683, 695 |
| ApoI | RAATTY | 1 cut(s) | 251 |
| AspS9I | GGNCC | 1 cut(s) | 270 |
| AsuHPI | GGTGA | 4 cut(s) | 134, 431, 481, 559 |
| BaeGI | GKGCMC | 2 cut(s) | 240, 710 |
| BalI | TGGCCA | 2 cut(s) | 413, 578 |
| BanI | GGYRCC | 1 cut(s) | 194 |
| BanII | GRGCYC | 1 cut(s) | 655 |
| Bbv12I | GWGCWC | 1 cut(s) | 655 |
| BbvI | GCAGC | 7 cut(s) | 470, 473, 598, 614, 645, 682, 695 |
| BccI | CCATC | 1 cut(s) | 101 |
| BceAI | ACGGC | 1 cut(s) | 5 |
| BciT130I | CCWGG | 1 cut(s) | 274 |
| BclI | TGATCA | 1 cut(s) | 208 |
| BcoDI | GTCTC | 3 cut(s) | 45, 167, 581 |
| BfaI | CTAG | 2 cut(s) | 327, 465 |
| BfmI | CTRYAG | 1 cut(s) | 618 |
| BisI | GCNGC | 7 cut(s) | 459, 462, 603, 612, 634, 684, 696 |
| BlsI | GCNGC | 7 cut(s) | 460, 463, 604, 613, 635, 685, 697 |
| Bme1390I | CCNGG | 1 cut(s) | 274 |
| BmgT120I | GGNCC | 1 cut(s) | 270 |
| BmiI | GGNNCC | 2 cut(s) | 91, 196 |
| BmrFI | CCNGG | 1 cut(s) | 274 |
| BmsI | GCATC | 2 cut(s) | 394, 658 |
| BpmI | CTGGAG | 1 cut(s) | 354 |
| Bpu10I | CCTNAGC | 1 cut(s) | 354 |
| BsaJI | CCNNGG | 4 cut(s) | 272, 381, 414, 537 |
| BsaWI | WCCGGW | 1 cut(s) | 119 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 327, 357 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 234, 308, 332, 448 |
| BseBI | CCWGG | 1 cut(s) | 274 |
| BseDI | CCNNGG | 4 cut(s) | 272, 381, 414, 537 |
| BseGI | GGATG | 3 cut(s) | 296, 409, 547 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 234, 308, 332, 448 |
| BseMII | CTCAG | 5 cut(s) | 182, 202, 368, 470, 725 |
| BseSI | GKGCMC | 2 cut(s) | 240, 710 |
| BseXI | GCAGC | 7 cut(s) | 470, 473, 598, 614, 645, 682, 695 |
| BseYI | CCCAGC | 2 cut(s) | 231, 394 |
| BsgI | GTGCAG | 2 cut(s) | 477, 534 |
| BshFI | GGCC | 4 cut(s) | 271, 413, 495, 578 |
| BshNI | GGYRCC | 1 cut(s) | 194 |
| BsiHKAI | GWGCWC | 1 cut(s) | 655 |
| BsiSI | CCGG | 1 cut(s) | 120 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 234, 308, 332, 448 |
| BsmAI | GTCTC | 3 cut(s) | 45, 167, 581 |
| BsmBI | CGTCTC | 1 cut(s) | 581 |
| BsnI | GGCC | 4 cut(s) | 271, 413, 495, 578 |
| Bsp1286I | GDGCHC | 3 cut(s) | 240, 655, 710 |
| Bsp143I | GATC | 3 cut(s) | 116, 208, 564 |
| BspACI | CCGC | 1 cut(s) | 229 |
| BspANI | GGCC | 4 cut(s) | 271, 413, 495, 578 |
| BspCNI | CTCAG | 5 cut(s) | 181, 201, 367, 471, 724 |
| BspLI | GGNNCC | 2 cut(s) | 91, 196 |
| BspMAI | CTGCAG | 1 cut(s) | 622 |
| BspPI | GGATC | 1 cut(s) | 111 |
| BspT107I | GGYRCC | 1 cut(s) | 194 |
| BssECI | CCNNGG | 4 cut(s) | 272, 381, 414, 537 |
| BssMI | GATC | 3 cut(s) | 116, 208, 564 |
| BssT1I | CCWWGG | 2 cut(s) | 381, 414 |
| Bst2UI | CCWGG | 1 cut(s) | 274 |
| Bst6I | CTCTTC | 1 cut(s) | 276 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 137, 611 |
| BstC8I | GCNNGC | 2 cut(s) | 181, 185 |
| BstDEI | CTNAG | 6 cut(s) | 168, 188, 354, 479, 674, 711 |
| BstDSI | CCRYGG | 1 cut(s) | 537 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 306 |
| BstF5I | GGATG | 3 cut(s) | 296, 409, 547 |
| BstKTI | GATC | 3 cut(s) | 119, 211, 567 |
| BstMAI | GTCTC | 3 cut(s) | 45, 167, 581 |
| BstMBI | GATC | 3 cut(s) | 116, 208, 564 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 137, 228, 458, 608, 611, 617, 692 |
| BstNI | CCWGG | 1 cut(s) | 274 |
| BstNSI | RCATGY | 1 cut(s) | 135 |
| BstSCI | CCNGG | 1 cut(s) | 272 |
| BstSFI | CTRYAG | 1 cut(s) | 618 |
| BstSLI | GKGCMC | 2 cut(s) | 240, 710 |
| BstV1I | GCAGC | 7 cut(s) | 470, 473, 598, 614, 645, 682, 695 |
| BstX2I | RGATCY | 1 cut(s) | 116 |
| BstYI | RGATCY | 1 cut(s) | 116 |
| BsuRI | GGCC | 4 cut(s) | 271, 413, 495, 578 |
| BtgI | CCRYGG | 1 cut(s) | 537 |
| BtsCI | GGATG | 3 cut(s) | 296, 409, 547 |
| BtsI | GCAGTG | 1 cut(s) | 627 |
| BtsIMutI | CAGTG | 2 cut(s) | 196, 627 |
| Cac8I | GCNNGC | 2 cut(s) | 181, 185 |
| CaiI | CAGNNNCTG | 1 cut(s) | 611 |
| Cfr13I | GGNCC | 1 cut(s) | 270 |
| Csp6I | GTAC | 1 cut(s) | 135 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 187, 222, 603, 638 |
| CviAII | CATG | 7 cut(s) | 68, 101, 132, 278, 373, 554, 580 |
| CviQI | GTAC | 1 cut(s) | 135 |
| DdeI | CTNAG | 6 cut(s) | 168, 188, 354, 479, 674, 711 |
| DpnI | GATC | 3 cut(s) | 118, 210, 566 |
| DpnII | GATC | 3 cut(s) | 116, 208, 564 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 376 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 376 |
| EaeI | YGGCCR | 2 cut(s) | 411, 576 |
| Eam1104I | CTCTTC | 1 cut(s) | 276 |
| EarI | CTCTTC | 1 cut(s) | 276 |
| Ecl136II | GAGCTC | 1 cut(s) | 653 |
| Eco130I | CCWWGG | 2 cut(s) | 381, 414 |
| Eco24I | GRGCYC | 1 cut(s) | 655 |
| Eco53kI | GAGCTC | 1 cut(s) | 653 |
| EcoICRI | GAGCTC | 1 cut(s) | 653 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 306 |
| EcoRII | CCWGG | 1 cut(s) | 272 |
| EcoT14I | CCWWGG | 2 cut(s) | 381, 414 |
| EcoT22I | ATGCAT | 1 cut(s) | 409 |
| EcoT38I | GRGCYC | 1 cut(s) | 655 |
| ErhI | CCWWGG | 2 cut(s) | 381, 414 |
| Esp3I | CGTCTC | 1 cut(s) | 581 |
| FaeI | CATG | 7 cut(s) | 71, 104, 135, 281, 376, 557, 583 |
| FatI | CATG | 7 cut(s) | 67, 100, 131, 277, 372, 553, 579 |
| FauI | CCCGC | 1 cut(s) | 236 |
| FbaI | TGATCA | 1 cut(s) | 208 |
| Fnu4HI | GCNGC | 7 cut(s) | 459, 462, 603, 612, 634, 684, 696 |
| FokI | GGATG | 3 cut(s) | 283, 416, 554 |
| FriOI | GRGCYC | 1 cut(s) | 655 |
| Fsp4HI | GCNGC | 7 cut(s) | 459, 462, 603, 612, 634, 684, 696 |
| FspBI | CTAG | 2 cut(s) | 327, 465 |
| GluI | GCNGC | 7 cut(s) | 459, 462, 603, 612, 634, 684, 696 |
| GsaI | CCCAGC | 2 cut(s) | 235, 398 |
| GsuI | CTGGAG | 1 cut(s) | 354 |
| HaeIII | GGCC | 4 cut(s) | 271, 413, 495, 578 |
| HapII | CCGG | 1 cut(s) | 120 |
| Hin1II | CATG | 7 cut(s) | 71, 104, 135, 281, 376, 557, 583 |
| HinfI | GANTC | 4 cut(s) | 158, 293, 434, 481 |
| HpaII | CCGG | 1 cut(s) | 120 |
| HphI | GGTGA | 4 cut(s) | 134, 431, 481, 559 |
| Hpy188I | TCNGA | 6 cut(s) | 116, 486, 562, 586, 667, 714 |
| Hpy188III | TCNNGA | 4 cut(s) | 170, 245, 356, 367 |
| HpyAV | CCTTC | 1 cut(s) | 160 |
| HpyCH4V | TGCA | 7 cut(s) | 131, 222, 407, 458, 515, 614, 620 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 137, 228, 458, 608, 611, 617, 692 |
| HpyF3I | CTNAG | 6 cut(s) | 168, 188, 354, 479, 674, 711 |
| Hsp92II | CATG | 7 cut(s) | 71, 104, 135, 281, 376, 557, 583 |
| Ksp22I | TGATCA | 1 cut(s) | 208 |
| Kzo9I | GATC | 3 cut(s) | 116, 208, 564 |
| LmnI | GCTCC | 2 cut(s) | 524, 650 |
| Lsp1109I | GCAGC | 7 cut(s) | 470, 473, 598, 614, 645, 682, 695 |
| LweI | GCATC | 2 cut(s) | 394, 658 |
| MaeI | CTAG | 2 cut(s) | 327, 465 |
| MaeIII | GTNAC | 4 cut(s) | 28, 145, 343, 469 |
| MalI | GATC | 3 cut(s) | 118, 210, 566 |
| MboI | GATC | 3 cut(s) | 116, 208, 564 |
| MboII | GAAGA | 3 cut(s) | 67, 293, 606 |
| MflI | RGATCY | 1 cut(s) | 116 |
| MhlI | GDGCHC | 3 cut(s) | 240, 655, 710 |
| MlsI | TGGCCA | 2 cut(s) | 413, 578 |
| MluCI | AATT | 3 cut(s) | 201, 251, 572 |
| MluNI | TGGCCA | 2 cut(s) | 413, 578 |
| MlyI | GAGTC | 1 cut(s) | 490 |
| MmeI | TCCRAC | 2 cut(s) | 502, 564 |
| MnlI | CCTC | 4 cut(s) | 277, 312, 506, 540 |
| Mox20I | TGGCCA | 2 cut(s) | 413, 578 |
| Mph1103I | ATGCAT | 1 cut(s) | 409 |
| MscI | TGGCCA | 2 cut(s) | 413, 578 |
| MseI | TTAA | 1 cut(s) | 531 |
| Msp20I | TGGCCA | 2 cut(s) | 413, 578 |
| MspA1I | CMGCKG | 1 cut(s) | 231 |
| MspI | CCGG | 1 cut(s) | 120 |
| MspR9I | CCNGG | 1 cut(s) | 274 |
| MvaI | CCWGG | 1 cut(s) | 274 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 137, 228, 458, 608, 611, 617, 692 |
| NdeII | GATC | 3 cut(s) | 116, 208, 564 |
| NlaIII | CATG | 7 cut(s) | 71, 104, 135, 281, 376, 557, 583 |
| NlaIV | GGNNCC | 2 cut(s) | 91, 196 |
| NmeAIII | GCCGAG | 1 cut(s) | 704 |
| NmuCI | GTSAC | 4 cut(s) | 28, 145, 343, 469 |
| NsiI | ATGCAT | 1 cut(s) | 409 |
| NspI | RCATGY | 1 cut(s) | 135 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 102 |
| PfeI | GAWTC | 3 cut(s) | 158, 293, 434 |
| PflFI | GACNNNGTC | 1 cut(s) | 101 |
| PkrI | GCNGC | 7 cut(s) | 460, 463, 604, 613, 635, 685, 697 |
| PleI | GAGTC | 1 cut(s) | 489 |
| PpsI | GAGTC | 1 cut(s) | 489 |
| Psp124BI | GAGCTC | 1 cut(s) | 655 |
| Psp6I | CCWGG | 1 cut(s) | 272 |
| PspFI | CCCAGC | 2 cut(s) | 231, 394 |
| PspGI | CCWGG | 1 cut(s) | 272 |
| PspN4I | GGNNCC | 2 cut(s) | 91, 196 |
| PspPI | GGNCC | 1 cut(s) | 270 |
| PstI | CTGCAG | 1 cut(s) | 622 |
| PstNI | CAGNNNCTG | 1 cut(s) | 611 |
| PsuI | RGATCY | 1 cut(s) | 116 |
| PsyI | GACNNNGTC | 1 cut(s) | 101 |
| RsaI | GTAC | 1 cut(s) | 136 |
| RsaNI | GTAC | 1 cut(s) | 135 |
| SacI | GAGCTC | 1 cut(s) | 655 |
| SaqAI | TTAA | 1 cut(s) | 531 |
| SatI | GCNGC | 7 cut(s) | 459, 462, 603, 612, 634, 684, 696 |
| Sau3AI | GATC | 3 cut(s) | 116, 208, 564 |
| Sau96I | GGNCC | 1 cut(s) | 270 |
| SchI | GAGTC | 1 cut(s) | 490 |
| ScrFI | CCNGG | 1 cut(s) | 274 |
| SduI | GDGCHC | 3 cut(s) | 240, 655, 710 |
| SetI | ASST | 9 cut(s) | 152, 217, 466, 529, 551, 613, 638, 655, 688 |
| SfaNI | GCATC | 2 cut(s) | 394, 658 |
| SfcI | CTRYAG | 1 cut(s) | 618 |
| Sse9I | AATT | 3 cut(s) | 201, 251, 572 |
| SsiI | CCGC | 1 cut(s) | 229 |
| SspMI | CTAG | 2 cut(s) | 327, 465 |
| SstI | GAGCTC | 1 cut(s) | 655 |
| StyD4I | CCNGG | 1 cut(s) | 272 |
| StyI | CCWWGG | 2 cut(s) | 381, 414 |
| TaqI | TCGA | 2 cut(s) | 96, 105 |
| TasI | AATT | 3 cut(s) | 201, 251, 572 |
| TatI | WGTACW | 1 cut(s) | 134 |
| TfiI | GAWTC | 3 cut(s) | 158, 293, 434 |
| Tru1I | TTAA | 1 cut(s) | 531 |
| Tru9I | TTAA | 1 cut(s) | 531 |
| TscAI | CASTG | 2 cut(s) | 196, 627 |
| TseFI | GTSAC | 4 cut(s) | 28, 145, 343, 469 |
| TseI | GCWGC | 7 cut(s) | 458, 461, 602, 611, 633, 683, 695 |
| Tsp45I | GTSAC | 4 cut(s) | 28, 145, 343, 469 |
| TspDTI | ATGAA | 3 cut(s) | 264, 285, 294 |
| TspGWI | ACGGA | 1 cut(s) | 526 |
| TspRI | CASTG | 2 cut(s) | 196, 627 |
| Tth111I | GACNNNGTC | 1 cut(s) | 101 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 306 |
| XapI | RAATTY | 1 cut(s) | 251 |
| XceI | RCATGY | 1 cut(s) | 135 |
| XspI | CTAG | 2 cut(s) | 327, 465 |
| Zsp2I | ATGCAT | 1 cut(s) | 409 |