pycom16g06570

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0013901
Physical Location & Seq
Forward (+)
4239498 .. 4241412
1915 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g06570.1

Sequence Viewer

Length: 903 bp
ATGGTTGGTTACTTGTTCAAAAAGCGAGCAACATTGCTGACTCGCTGCCCAGTAACGACACGCAACACCGCGCACTCACAGAGTCGTGGCCTGGTCTCTACGAACACTACAACTTCCTCCTCCTCTGATACACTCGATCCCGAAACATCTACTGAGCTCAGATTTTTGGAGAAGATGAATTCTGGTGGATACGCCGTTGAAGTTACGGGTCTGTCTCCGAAAGCAACAGAGAAAGATGTCTACGATTTCTTCGCCTTCTCTGGTTCCATCGACCATGTCGAAATCGTCAGATCGGGTGAATGTGCATGCACTGCCTATGTGACGTTCAAAGATTCGTATTCTCAGGAGACTGCTTGCTTGCTCAGTGGTGCCACAATTATCGATCAAGCTGTGTGCATAACACGCTGGGGGCACTATCAAGATGAATTTGATTTTTGGAACAGGCCTCAGCATGAAGTGGAAACTGATTCAACTCCTCCACATGGAAGCCAGAATGTTCCTAGTGCTGGACAAGTGGTGAGTGTGGCCCAGGAAGCAGTCTTGACCATGTTGGCCAAGGGATTTGTGCTCGGAAAAGATGCATTAGCCAAGGCGAAATCATTGGATGAGTCTCATCAAGTTTCGGCAAGTGCAACAGCTAGGGTGACTGAACTGAGCCAGAGAATTGGCCTAACCGATAAGATTTACGCAGGGGTTGGAGCTGTGAAGTCAGTGGATGAGAGGTATCATGTGTCAGAGATCACCAAATCAGCCATATCAGAGACGGGAAGAAAAGCCACAGAAGCTGCGAACGCTGTGGTGAATAGTAGCTACTTTTCTAAGGGAGCTCTTTGGGTGTCGGATGCTCTAAACCGAGCGGCTAAAGCTGCTGCTGATTTGGGAAATCAGAATGTTAAGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

301

Amino Acids

32.28

Weight (kDa)

6.0

Isoelectric Point (pI)

40.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 68 - 125 4.7e-07 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013901)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14340
fragaria_vesca FvH4_4g31610 FvH4_4g31610
malus_domestica MD13G1074500.v1.1 MD16G1075800.v1.1
prunus_persica Prupe.1G271600_v2.0.a1 Prupe.1G271600_v2.0.a1
pyrus_communis pycom16g06570
rosa_chinensis RchiOBHm_Chr4g0440121
rosa_laevigata RLG00000006204
rosa_multiflora Rmu_sc0001685.1_g000017
rosa_roxburghii Rroxscaffold_5G00381050
rosa_rugosa Rorug04G0324400
rosa_samantha Rh4AG375300 Rh4CG402100 Rh4DG381800
rosa_wichuraiana Rw4G032110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 368
AccBSI CCGCTC 1 cut(s) 857
AccI GTMKAC 1 cut(s) 240
AccII CGCG 1 cut(s) 71
AciI CCGC 2 cut(s) 69, 857
AclWI GGATC 1 cut(s) 131
AcoI YGGCCR 1 cut(s) 552
AcsI RAATTY 2 cut(s) 178, 425
AfiI CCNNNNNNNGG 2 cut(s) 482, 506
AgsI TTSAA 4 cut(s) 19, 200, 328, 471
AjnI CCWGG 2 cut(s) 90, 528
AluBI AGCT 8 cut(s) 157, 389, 638, 701, 785, 810, 827, 866
AluI AGCT 8 cut(s) 157, 389, 638, 701, 785, 810, 827, 866
Alw21I GWGCWC 3 cut(s) 159, 570, 829
Alw26I GTCTC 5 cut(s) 100, 219, 341, 615, 755
AlwI GGATC 1 cut(s) 131
AlwNI CAGNNNCTG 1 cut(s) 785
AoxI GGCC 5 cut(s) 88, 443, 525, 552, 667
ApeKI GCWGC 4 cut(s) 45, 785, 866, 869
ApoI RAATTY 2 cut(s) 178, 425
AspLEI GCGC 1 cut(s) 73
AspS9I GGNCC 1 cut(s) 526
AsuHPI GGTGA 5 cut(s) 308, 529, 655, 733, 811
BaeGI GKGCMC 1 cut(s) 414
BalI TGGCCA 1 cut(s) 554
BanI GGYRCC 1 cut(s) 368
BanII GRGCYC 2 cut(s) 159, 829
Bbv12I GWGCWC 3 cut(s) 159, 570, 829
BbvCI CCTCAGC 1 cut(s) 447
BbvI GCAGC 4 cut(s) 32, 772, 853, 856
BccI CCATC 1 cut(s) 275
BceAI ACGGC 1 cut(s) 179
BciT130I CCWGG 2 cut(s) 92, 530
BciVI GTATCC 1 cut(s) 182
BcoDI GTCTC 5 cut(s) 100, 219, 341, 615, 755
BfaI CTAG 2 cut(s) 501, 639
BfuI GTATCC 1 cut(s) 182
BisI GCNGC 5 cut(s) 46, 786, 858, 867, 870
BlsI GCNGC 5 cut(s) 47, 787, 859, 868, 871
Bme1390I CCNGG 2 cut(s) 92, 530
BmgT120I GGNCC 1 cut(s) 526
BmiI GGNNCC 2 cut(s) 265, 370
BmrFI CCNGG 2 cut(s) 92, 530
BmrI ACTGGG 1 cut(s) 44
BmsI GCATC 2 cut(s) 568, 832
BmuI ACTGGG 1 cut(s) 44
Bpu10I CCTNAGC 1 cut(s) 447
Bsa29I ATCGAT 1 cut(s) 381
BsaI GGTCTC 1 cut(s) 100
BsaJI CCNNGG 3 cut(s) 528, 555, 588
Bsc4I CCNNNNNNNGG 2 cut(s) 482, 506
Bse1I ACTGG 1 cut(s) 50
Bse3DI GCAATG 1 cut(s) 32
BseBI CCWGG 2 cut(s) 92, 530
BseCI ATCGAT 1 cut(s) 381
BseDI CCNNGG 3 cut(s) 528, 555, 588
BseGI GGATG 3 cut(s) 610, 721, 847
BseLI CCNNNNNNNGG 2 cut(s) 482, 506
BseMI GCAATG 1 cut(s) 32
BseMII CTCAG 6 cut(s) 144, 172, 356, 376, 461, 644
BseNI ACTGG 1 cut(s) 50
BseRI GAGGAG 3 cut(s) 109, 112, 465
BseSI GKGCMC 1 cut(s) 414
BseXI GCAGC 4 cut(s) 32, 772, 853, 856
BseYI CCCAGC 1 cut(s) 405
Bsh1236I CGCG 1 cut(s) 71
BshFI GGCC 5 cut(s) 90, 445, 527, 554, 669
BshNI GGYRCC 1 cut(s) 368
BshVI ATCGAT 1 cut(s) 381
BsiHKAI GWGCWC 3 cut(s) 159, 570, 829
BslI CCNNNNNNNGG 2 cut(s) 482, 506
BsmAI GTCTC 5 cut(s) 100, 219, 341, 615, 755
BsmBI CGTCTC 1 cut(s) 755
BsnI GGCC 5 cut(s) 90, 445, 527, 554, 669
Bso31I GGTCTC 1 cut(s) 100
Bsp1286I GDGCHC 4 cut(s) 159, 414, 570, 829
Bsp143I GATC 4 cut(s) 136, 290, 382, 738
BspACI CCGC 2 cut(s) 69, 857
BspANI GGCC 5 cut(s) 90, 445, 527, 554, 669
BspCNI CTCAG 6 cut(s) 145, 171, 355, 375, 460, 645
BspDI ATCGAT 1 cut(s) 381
BspFNI CGCG 1 cut(s) 71
BspLI GGNNCC 2 cut(s) 265, 370
BspPI GGATC 1 cut(s) 131
BspT107I GGYRCC 1 cut(s) 368
BspTNI GGTCTC 1 cut(s) 100
BsrBI CCGCTC 1 cut(s) 857
BsrDI GCAATG 1 cut(s) 32
BsrI ACTGG 1 cut(s) 50
BssECI CCNNGG 3 cut(s) 528, 555, 588
BssMI GATC 4 cut(s) 136, 290, 382, 738
BssT1I CCWWGG 2 cut(s) 555, 588
Bst2UI CCWGG 2 cut(s) 92, 530
BstAPI GCANNNNNTGC 1 cut(s) 311
BstC8I GCNNGC 4 cut(s) 27, 307, 355, 359
BstDEI CTNAG 7 cut(s) 153, 158, 342, 362, 447, 653, 819
BstF5I GGATG 3 cut(s) 610, 721, 847
BstFNI CGCG 1 cut(s) 71
BstHHI GCGC 1 cut(s) 73
BstKTI GATC 4 cut(s) 139, 293, 385, 741
BstMAI GTCTC 5 cut(s) 100, 219, 341, 615, 755
BstMBI GATC 4 cut(s) 136, 290, 382, 738
BstMWI GCNNNNNNNGC 7 cut(s) 311, 402, 533, 782, 791, 863, 866
BstNI CCWGG 2 cut(s) 92, 530
BstNSI RCATGY 1 cut(s) 309
BstSCI CCNGG 2 cut(s) 90, 528
BstSLI GKGCMC 1 cut(s) 414
BstUI CGCG 1 cut(s) 71
BstV1I GCAGC 4 cut(s) 32, 772, 853, 856
BstXI CCANNNNNNTGG 1 cut(s) 665
Bsu15I ATCGAT 1 cut(s) 381
BsuI GTATCC 1 cut(s) 182
BsuRI GGCC 5 cut(s) 90, 445, 527, 554, 669
BsuTUI ATCGAT 1 cut(s) 381
BtsCI GGATG 3 cut(s) 610, 721, 847
BtsI GCAGTG 1 cut(s) 309
BtsIMutI CAGTG 3 cut(s) 309, 370, 717
Cac8I GCNNGC 4 cut(s) 27, 307, 355, 359
CaiI CAGNNNCTG 1 cut(s) 785
CfoI GCGC 1 cut(s) 73
Cfr13I GGNCC 1 cut(s) 526
ClaI ATCGAT 1 cut(s) 381
CviAII CATG 6 cut(s) 275, 306, 452, 482, 547, 728
DdeI CTNAG 7 cut(s) 153, 158, 342, 362, 447, 653, 819
DpnI GATC 4 cut(s) 138, 292, 384, 740
DpnII GATC 4 cut(s) 136, 290, 382, 738
EaeI YGGCCR 1 cut(s) 552
Ecl136II GAGCTC 2 cut(s) 157, 827
Eco130I CCWWGG 2 cut(s) 555, 588
Eco147I AGGCCT 1 cut(s) 445
Eco24I GRGCYC 2 cut(s) 159, 829
Eco31I GGTCTC 1 cut(s) 100
Eco53kI GAGCTC 2 cut(s) 157, 827
EcoICRI GAGCTC 2 cut(s) 157, 827
EcoRI GAATTC 1 cut(s) 178
EcoRII CCWGG 2 cut(s) 90, 528
EcoT14I CCWWGG 2 cut(s) 555, 588
EcoT22I ATGCAT 1 cut(s) 583
EcoT38I GRGCYC 2 cut(s) 159, 829
ErhI CCWWGG 2 cut(s) 555, 588
Esp3I CGTCTC 1 cut(s) 755
FaeI CATG 6 cut(s) 278, 309, 455, 485, 550, 731
FaiI YATR 9 cut(s) 276, 307, 318, 398, 453, 483, 548, 729, 755
FatI CATG 6 cut(s) 274, 305, 451, 481, 546, 727
FblI GTMKAC 1 cut(s) 240
Fnu4HI GCNGC 5 cut(s) 46, 786, 858, 867, 870
FokI GGATG 3 cut(s) 617, 728, 854
FriOI GRGCYC 2 cut(s) 159, 829
Fsp4HI GCNGC 5 cut(s) 46, 786, 858, 867, 870
FspBI CTAG 2 cut(s) 501, 639
GlaI GCGC 1 cut(s) 72
GluI GCNGC 5 cut(s) 46, 786, 858, 867, 870
GsaI CCCAGC 1 cut(s) 409
HaeIII GGCC 5 cut(s) 90, 445, 527, 554, 669
HhaI GCGC 1 cut(s) 73
Hin1II CATG 6 cut(s) 278, 309, 455, 485, 550, 731
Hin6I GCGC 1 cut(s) 71
HinP1I GCGC 1 cut(s) 71
HinfI GANTC 5 cut(s) 40, 82, 332, 467, 608
HphI GGTGA 5 cut(s) 308, 529, 655, 733, 811
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 9 cut(s) 127, 161, 219, 290, 572, 736, 760, 841, 888
Hpy188III TCNNGA 4 cut(s) 140, 344, 419, 541
Hpy8I GTNNAC 1 cut(s) 241
HpyAV CCTTC 1 cut(s) 265
HpyCH4IV ACGT 1 cut(s) 323
HpyCH4V TGCA 5 cut(s) 305, 309, 396, 581, 632
HpyF10VI GCNNNNNNNGC 7 cut(s) 311, 402, 533, 782, 791, 863, 866
HpyF3I CTNAG 7 cut(s) 153, 158, 342, 362, 447, 653, 819
HpySE526I ACGT 1 cut(s) 323
Hsp92II CATG 6 cut(s) 278, 309, 455, 485, 550, 731
HspAI GCGC 1 cut(s) 71
Kzo9I GATC 4 cut(s) 136, 290, 382, 738
LmnI GCTCC 2 cut(s) 698, 824
Lsp1109I GCAGC 4 cut(s) 32, 772, 853, 856
LweI GCATC 2 cut(s) 568, 832
MaeI CTAG 2 cut(s) 501, 639
MaeII ACGT 1 cut(s) 323
MaeIII GTNAC 5 cut(s) 8, 52, 202, 319, 643
MalI GATC 4 cut(s) 138, 292, 384, 740
MbiI CCGCTC 1 cut(s) 857
MboI GATC 4 cut(s) 136, 290, 382, 738
MboII GAAGA 3 cut(s) 184, 241, 780
MhlI GDGCHC 4 cut(s) 159, 414, 570, 829
MlsI TGGCCA 1 cut(s) 554
MluCI AATT 4 cut(s) 178, 375, 425, 663
MluNI TGGCCA 1 cut(s) 554
MlyI GAGTC 3 cut(s) 34, 91, 617
MmeI TCCRAC 2 cut(s) 676, 819
MnlI CCTC 6 cut(s) 127, 130, 133, 456, 486, 714
Mox20I TGGCCA 1 cut(s) 554
Mph1103I ATGCAT 1 cut(s) 583
MscI TGGCCA 1 cut(s) 554
MseI TTAA 1 cut(s) 894
Msp20I TGGCCA 1 cut(s) 554
MspR9I CCNGG 2 cut(s) 92, 530
MvaI CCWGG 2 cut(s) 92, 530
MvnI CGCG 1 cut(s) 71
MwoI GCNNNNNNNGC 7 cut(s) 311, 402, 533, 782, 791, 863, 866
NdeII GATC 4 cut(s) 136, 290, 382, 738
NlaIII CATG 6 cut(s) 278, 309, 455, 485, 550, 731
NlaIV GGNNCC 2 cut(s) 265, 370
NmuCI GTSAC 2 cut(s) 319, 643
NsiI ATGCAT 1 cut(s) 583
NspI RCATGY 1 cut(s) 309
PaeI GCATGC 1 cut(s) 309
PceI AGGCCT 1 cut(s) 445
PcsI WCGNNNNNNNCGW 1 cut(s) 276
PfeI GAWTC 2 cut(s) 332, 467
PflFI GACNNNGTC 1 cut(s) 275
PkrI GCNGC 5 cut(s) 47, 787, 859, 868, 871
PleI GAGTC 3 cut(s) 34, 90, 616
PpsI GAGTC 3 cut(s) 34, 90, 616
Psp124BI GAGCTC 2 cut(s) 159, 829
Psp6I CCWGG 2 cut(s) 90, 528
PspFI CCCAGC 1 cut(s) 405
PspGI CCWGG 2 cut(s) 90, 528
PspN4I GGNNCC 2 cut(s) 265, 370
PspPI GGNCC 1 cut(s) 526
PstNI CAGNNNCTG 1 cut(s) 785
PsyI GACNNNGTC 1 cut(s) 275
SacI GAGCTC 2 cut(s) 159, 829
SaqAI TTAA 1 cut(s) 894
SatI GCNGC 5 cut(s) 46, 786, 858, 867, 870
Sau3AI GATC 4 cut(s) 136, 290, 382, 738
Sau96I GGNCC 1 cut(s) 526
SchI GAGTC 3 cut(s) 34, 91, 617
ScrFI CCNGG 2 cut(s) 92, 530
SduI GDGCHC 4 cut(s) 159, 414, 570, 829
SfaNI GCATC 2 cut(s) 568, 832
SphI GCATGC 1 cut(s) 309
Sse9I AATT 4 cut(s) 178, 375, 425, 663
SseBI AGGCCT 1 cut(s) 445
SsiI CCGC 2 cut(s) 69, 857
SspMI CTAG 2 cut(s) 501, 639
SstI GAGCTC 2 cut(s) 159, 829
StuI AGGCCT 1 cut(s) 445
StyD4I CCNGG 2 cut(s) 90, 528
StyI CCWWGG 2 cut(s) 555, 588
TaiI ACGT 1 cut(s) 326
TaqI TCGA 4 cut(s) 135, 270, 279, 381
TasI AATT 4 cut(s) 178, 375, 425, 663
TauI GCSGC 1 cut(s) 860
TfiI GAWTC 2 cut(s) 332, 467
Tru1I TTAA 1 cut(s) 894
Tru9I TTAA 1 cut(s) 894
TscAI CASTG 3 cut(s) 316, 370, 717
TseFI GTSAC 2 cut(s) 319, 643
TseI GCWGC 4 cut(s) 45, 785, 866, 869
Tsp45I GTSAC 2 cut(s) 319, 643
TspDTI ATGAA 3 cut(s) 191, 438, 468
TspRI CASTG 3 cut(s) 316, 370, 717
Tth111I GACNNNGTC 1 cut(s) 275
XapI RAATTY 2 cut(s) 178, 425
XceI RCATGY 1 cut(s) 309
XmiI GTMKAC 1 cut(s) 240
XspI CTAG 2 cut(s) 501, 639
Zsp2I ATGCAT 1 cut(s) 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.