Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0019135

Physical Location & Seq

Genomic Coordinates Reverse (-)

5776177 .. 5778529

Gene Structure 2353 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G16890.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGAGATATTTCAATGTTATGATTCTTGGTCCTACTCAATCTCCTTATGAAGGAGGAGTTTTCAAGTTGGAGCTCTTTTTGCCTGAAGAATATCCTATGGCAGCTCCCAAGGTTAGGTTTCTCACCAAGATTTACCATCCTAACATCGACAAGCTTGGAAGAATCTGCCTTGACATACTGAAAGACAAGTGGAGTCCTGCACTACAAATACGAACTGTGCTCTTGAGTATCCAAGCTCTTTTAAGTGCACCAAACCCAGATGATCCTCTGTCTGAGAACATAGCTAAGCATTGGAAGAGCAATGAGGCAGAAGCTGTGGAAACAGCTAAGGAATGGACTCGTCTTTACGCAAGTGGTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0061630 GO:0061659 GO:0070534 GO:0070647 GO:0071704 GO:0090304 GO:0140096 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 ko04624 map04120 map04624

Pfam Domains

Protein Families

UQ_con

Protein Analysis

120

Amino Acids

13.63

Weight (kDa)

6.73

Isoelectric Point (pI)

40.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	29 - 154	1e-48	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0019135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16890 AT1G78870 AT1G78870 AT1G78870
rosa_multiflora	Rmu_sc0006236.1_g000001
rosa_samantha	Rh5AG216800 Rh5BG216300 Rh5DG221400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	257
AcuI	CTGAAG	1 cut(s)	105
AfiI	CCNNNNNNNGG	2 cut(s)	50, 114
AgsI	TTSAA	2 cut(s)	13, 64
AluBI	AGCT	7 cut(s)	73, 104, 154, 236, 284, 314, 326
AluI	AGCT	7 cut(s)	73, 104, 154, 236, 284, 314, 326
Alw21I	GWGCWC	3 cut(s)	75, 222, 250
Alw44I	GTGCAC	1 cut(s)	246
AlwI	GGATC	1 cut(s)	257
AlwNI	CAGNNNCTG	1 cut(s)	314
ApaLI	GTGCAC	1 cut(s)	246
ApeKI	GCWGC	1 cut(s)	101
AspS9I	GGNCC	1 cut(s)	29
AsuHPI	GGTGA	1 cut(s)	115
AvaII	GGWCC	1 cut(s)	29
BaeGI	GKGCMC	1 cut(s)	250
BanII	GRGCYC	1 cut(s)	75
Bbv12I	GWGCWC	3 cut(s)	75, 222, 250
BbvI	GCAGC	1 cut(s)	113
BccI	CCATC	1 cut(s)	144
BciVI	GTATCC	1 cut(s)	239
BfuI	GTATCC	1 cut(s)	239
BisI	GCNGC	1 cut(s)	102
BlpI	GCTNAGC	1 cut(s)	285
BlsI	GCNGC	1 cut(s)	103
Bme18I	GGWCC	1 cut(s)	29
BmgT120I	GGNCC	1 cut(s)	29
Bpu10I	CCTNAGC	1 cut(s)	327
Bpu1102I	GCTNAGC	1 cut(s)	285
BpuEI	CTTGAG	1 cut(s)	244
BsaJI	CCNNGG	1 cut(s)	108
BsaXI	ACNNNNNCTCC	2 cut(s)	25, 55
Bsc4I	CCNNNNNNNGG	2 cut(s)	50, 114
Bse3DI	GCAATG	1 cut(s)	307
BseDI	CCNNGG	1 cut(s)	108
BseGI	GGATG	1 cut(s)	136
BseLI	CCNNNNNNNGG	2 cut(s)	50, 114
BseMI	GCAATG	1 cut(s)	307
BseMII	CTCAG	1 cut(s)	264
BseRI	GAGGAG	1 cut(s)	69
BseSI	GKGCMC	1 cut(s)	250
BseXI	GCAGC	1 cut(s)	113
BsgI	GTGCAG	1 cut(s)	183
BsiHKAI	GWGCWC	3 cut(s)	75, 222, 250
BslI	CCNNNNNNNGG	2 cut(s)	50, 114
Bsp1286I	GDGCHC	3 cut(s)	75, 222, 250
Bsp143I	GATC	1 cut(s)	262
Bsp1720I	GCTNAGC	1 cut(s)	285
BspCNI	CTCAG	1 cut(s)	265
BspPI	GGATC	1 cut(s)	257
BspQI	GCTCTTC	1 cut(s)	290
BsrDI	GCAATG	1 cut(s)	307
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	1 cut(s)	262
BssT1I	CCWWGG	1 cut(s)	108
Bst4CI	ACNGT	1 cut(s)	217
Bst6I	CTCTTC	1 cut(s)	290
BstAPI	GCANNNNNTGC	1 cut(s)	356
BstDEI	CTNAG	3 cut(s)	273, 285, 327
BstENI	CCTNNNNNAGG	1 cut(s)	48
BstF5I	GGATG	1 cut(s)	136
BstKTI	GATC	1 cut(s)	265
BstMBI	GATC	1 cut(s)	262
BstMWI	GCNNNNNNNGC	2 cut(s)	79, 356
BstSLI	GKGCMC	1 cut(s)	250
BstV1I	GCAGC	1 cut(s)	113
BsuI	GTATCC	1 cut(s)	239
BtsCI	GGATG	1 cut(s)	136
CaiI	CAGNNNCTG	1 cut(s)	314
Cfr13I	GGNCC	1 cut(s)	29
CviJI	RGCY	7 cut(s)	73, 104, 154, 236, 284, 314, 326
CviKI_1	RGCY	7 cut(s)	73, 104, 154, 236, 284, 314, 326
DdeI	CTNAG	3 cut(s)	273, 285, 327
DpnI	GATC	1 cut(s)	264
DpnII	GATC	1 cut(s)	262
Eam1104I	CTCTTC	1 cut(s)	290
EarI	CTCTTC	1 cut(s)	290
Ecl136II	GAGCTC	1 cut(s)	73
Eco130I	CCWWGG	1 cut(s)	108
Eco24I	GRGCYC	1 cut(s)	75
Eco47I	GGWCC	1 cut(s)	29
Eco53kI	GAGCTC	1 cut(s)	73
Eco57I	CTGAAG	1 cut(s)	105
EcoICRI	GAGCTC	1 cut(s)	73
EcoNI	CCTNNNNNAGG	1 cut(s)	48
EcoT14I	CCWWGG	1 cut(s)	108
EcoT38I	GRGCYC	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	108
FaiI	YATR	5 cut(s)	20, 48, 98, 176, 281
FalI	AAGNNNNNCTT	1 cut(s)	343
Fnu4HI	GCNGC	1 cut(s)	102
FokI	GGATG	1 cut(s)	123
FriOI	GRGCYC	1 cut(s)	75
Fsp4HI	GCNGC	1 cut(s)	102
GluI	GCNGC	1 cut(s)	102
HindIII	AAGCTT	1 cut(s)	152
HinfI	GANTC	4 cut(s)	22, 162, 193, 337
HphI	GGTGA	1 cut(s)	115
Hpy166II	GTNNAC	1 cut(s)	248
Hpy188I	TCNGA	1 cut(s)	274
Hpy188III	TCNNGA	1 cut(s)	223
Hpy8I	GTNNAC	1 cut(s)	248
HpyAV	CCTTC	1 cut(s)	44
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4V	TGCA	2 cut(s)	200, 248
HpyF10VI	GCNNNNNNNGC	2 cut(s)	79, 356
HpyF3I	CTNAG	3 cut(s)	273, 285, 327
Kzo9I	GATC	1 cut(s)	262
LguI	GCTCTTC	1 cut(s)	290
LmnI	GCTCC	2 cut(s)	70, 109
LpnPI	CCDG	3 cut(s)	96, 210, 270
Lsp1109I	GCAGC	1 cut(s)	113
MalI	GATC	1 cut(s)	264
MboI	GATC	1 cut(s)	262
MboII	GAAGA	3 cut(s)	98, 171, 307
MhlI	GDGCHC	3 cut(s)	75, 222, 250
MlyI	GAGTC	2 cut(s)	202, 331
MmeI	TCCRAC	1 cut(s)	48
MnlI	CCTC	3 cut(s)	47, 276, 298
MseI	TTAA	2 cut(s)	242, 361
MwoI	GCNNNNNNNGC	2 cut(s)	79, 356
NdeII	GATC	1 cut(s)	262
PciSI	GCTCTTC	1 cut(s)	290
PfeI	GAWTC	2 cut(s)	22, 162
PkrI	GCNGC	1 cut(s)	103
PleI	GAGTC	2 cut(s)	201, 331
PpsI	GAGTC	2 cut(s)	201, 331
Psp124BI	GAGCTC	1 cut(s)	75
PspPI	GGNCC	1 cut(s)	29
PstNI	CAGNNNCTG	1 cut(s)	314
SacI	GAGCTC	1 cut(s)	75
SapI	GCTCTTC	1 cut(s)	290
SaqAI	TTAA	2 cut(s)	242, 361
SatI	GCNGC	1 cut(s)	102
Sau3AI	GATC	1 cut(s)	262
Sau96I	GGNCC	1 cut(s)	29
SchI	GAGTC	2 cut(s)	202, 331
SduI	GDGCHC	3 cut(s)	75, 222, 250
SetI	ASST	9 cut(s)	75, 106, 114, 119, 156, 238, 286, 316, 328
SinI	GGWCC	1 cut(s)	29
SmlI	CTYRAG	1 cut(s)	223
SmoI	CTYRAG	1 cut(s)	223
SstI	GAGCTC	1 cut(s)	75
StyI	CCWWGG	1 cut(s)	108
TaaI	ACNGT	1 cut(s)	217
TaqI	TCGA	1 cut(s)	147
TfiI	GAWTC	2 cut(s)	22, 162
Tru1I	TTAA	2 cut(s)	242, 361
Tru9I	TTAA	2 cut(s)	242, 361
TseI	GCWGC	1 cut(s)	101
TspDTI	ATGAA	1 cut(s)	63
VneI	GTGCAC	1 cut(s)	246
VpaK11BI	GGWCC	1 cut(s)	29
XagI	CCTNNNNNAGG	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.