Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0019135

Physical Location & Seq

Genomic Coordinates Forward (+)

29650376 .. 29652627

Gene Structure 2252 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G78870.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGCGGTATTTCAACGTTATGATTCTTGGTCCTACACAATCACCTTATGAAGGTAGAGGAGTTTTCAAGTTGGAGCTCTTTTTGCCTGAAGAATACCCTATGGCAGCTCCCAAGGTTAGGTTTCTCACAAAGATATACCATCCTAACATTGACAAGCTTGGAAGAATCTGTCTTGATATTCTCAAGGACAAATGGAGCCCTGCACTACAAATACGAACAGTGCTCTTAAGTATTCAAGCTCTTCTGAGTGCACCAAACCCAGATGATCCGCTTTCTGAGAACATTGCTAAGCACTGGAAGAGTAATGAGGCAGAAGCTGTGGATACAGCTAAGGAATGGACCCGTCTTTATGCAAGCGGCGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010035 GO:0010038 GO:0010039 GO:0010053 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0022622 GO:0030154 GO:0030163 GO:0031625 GO:0032446 GO:0032501 GO:0032502 GO:0033554 GO:0034641 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0048364 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0070534 GO:0070647 GO:0071704 GO:0090304 GO:0090558 GO:0090627 GO:0099402 GO:0140096 GO:1901360 GO:1901564 GO:1901565 GO:1901575 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04120 ko04624 map04120 map04624

Pfam Domains

Protein Families

UQ_con

Protein Analysis

121

Amino Acids

13.77

Weight (kDa)

7.83

Isoelectric Point (pI)

35.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	9 - 109	8.1e-39	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0019135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16890 AT1G78870 AT1G78870 AT1G78870
rosa_multiflora	Rmu_sc0006236.1_g000001
rosa_samantha	Rh5AG216800 Rh5BG216300 Rh5DG221400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	4, 269, 357
AclI	AACGTT	1 cut(s)	15
AclWI	GGATC	1 cut(s)	260
AcuI	CTGAAG	1 cut(s)	108
AfiI	CCNNNNNNNGG	2 cut(s)	50, 117
AflII	CTTAAG	1 cut(s)	226
AgsI	TTSAA	3 cut(s)	13, 67, 236
AluBI	AGCT	6 cut(s)	76, 107, 157, 239, 317, 329
AluI	AGCT	6 cut(s)	76, 107, 157, 239, 317, 329
Alw21I	GWGCWC	3 cut(s)	78, 225, 253
Alw44I	GTGCAC	1 cut(s)	249
AlwI	GGATC	1 cut(s)	260
AlwNI	CAGNNNCTG	1 cut(s)	317
ApaLI	GTGCAC	1 cut(s)	249
ApeKI	GCWGC	1 cut(s)	104
AspLEI	GCGC	1 cut(s)	362
AspS9I	GGNCC	2 cut(s)	29, 339
AsuHPI	GGTGA	1 cut(s)	33
AvaII	GGWCC	2 cut(s)	29, 339
BaeGI	GKGCMC	1 cut(s)	253
BanII	GRGCYC	2 cut(s)	78, 200
Bbv12I	GWGCWC	3 cut(s)	78, 225, 253
BbvI	GCAGC	1 cut(s)	116
BccI	CCATC	1 cut(s)	147
BciVI	GTATCC	1 cut(s)	316
BfrI	CTTAAG	1 cut(s)	226
BfuI	GTATCC	1 cut(s)	316
BisI	GCNGC	2 cut(s)	105, 358
BlpI	GCTNAGC	1 cut(s)	288
BlsI	GCNGC	2 cut(s)	106, 359
Bme18I	GGWCC	2 cut(s)	29, 339
BmgT120I	GGNCC	2 cut(s)	29, 339
BmiI	GGNNCC	2 cut(s)	197, 341
Bpu10I	CCTNAGC	1 cut(s)	330
Bpu1102I	GCTNAGC	1 cut(s)	288
BpuEI	CTTGAG	1 cut(s)	167
BsaJI	CCNNGG	1 cut(s)	111
Bsc4I	CCNNNNNNNGG	2 cut(s)	50, 117
Bse1I	ACTGG	1 cut(s)	299
Bse3DI	GCAATG	1 cut(s)	282
BseDI	CCNNGG	1 cut(s)	111
BseGI	GGATG	1 cut(s)	139
BseLI	CCNNNNNNNGG	2 cut(s)	50, 117
BseMI	GCAATG	1 cut(s)	282
BseMII	CTCAG	2 cut(s)	236, 267
BseNI	ACTGG	1 cut(s)	299
BseRI	GAGGAG	1 cut(s)	72
BseSI	GKGCMC	1 cut(s)	253
BseXI	GCAGC	1 cut(s)	116
BsgI	GTGCAG	1 cut(s)	186
BsiHKAI	GWGCWC	3 cut(s)	78, 225, 253
BslI	CCNNNNNNNGG	2 cut(s)	50, 117
Bsp1286I	GDGCHC	4 cut(s)	78, 200, 225, 253
Bsp143I	GATC	1 cut(s)	265
Bsp1720I	GCTNAGC	1 cut(s)	288
BspACI	CCGC	3 cut(s)	4, 269, 357
BspCNI	CTCAG	2 cut(s)	237, 268
BspLI	GGNNCC	2 cut(s)	197, 341
BspPI	GGATC	1 cut(s)	260
BspQI	GCTCTTC	1 cut(s)	246
BspTI	CTTAAG	1 cut(s)	226
BsrDI	GCAATG	1 cut(s)	282
BsrI	ACTGG	1 cut(s)	299
BssECI	CCNNGG	1 cut(s)	111
BssMI	GATC	1 cut(s)	265
BssT1I	CCWWGG	1 cut(s)	111
Bst4CI	ACNGT	1 cut(s)	220
Bst6I	CTCTTC	2 cut(s)	246, 293
BstAFI	CTTAAG	1 cut(s)	226
BstC8I	GCNNGC	1 cut(s)	355
BstDEI	CTNAG	4 cut(s)	245, 276, 288, 330
BstENI	CCTNNNNNAGG	1 cut(s)	48
BstF5I	GGATG	1 cut(s)	139
BstHHI	GCGC	1 cut(s)	362
BstKTI	GATC	1 cut(s)	268
BstMBI	GATC	1 cut(s)	265
BstMWI	GCNNNNNNNGC	2 cut(s)	82, 359
BstSLI	GKGCMC	1 cut(s)	253
BstV1I	GCAGC	1 cut(s)	116
BsuI	GTATCC	1 cut(s)	316
BtsCI	GGATG	1 cut(s)	139
BtsIMutI	CAGTG	2 cut(s)	225, 292
Cac8I	GCNNGC	1 cut(s)	355
CaiI	CAGNNNCTG	1 cut(s)	317
CfoI	GCGC	1 cut(s)	362
Cfr13I	GGNCC	2 cut(s)	29, 339
CviAII	CATG	1 cut(s)	363
CviJI	RGCY	7 cut(s)	76, 107, 157, 198, 239, 317, 329
CviKI_1	RGCY	7 cut(s)	76, 107, 157, 198, 239, 317, 329
DdeI	CTNAG	4 cut(s)	245, 276, 288, 330
DpnI	GATC	1 cut(s)	267
DpnII	GATC	1 cut(s)	265
Eam1104I	CTCTTC	2 cut(s)	246, 293
EarI	CTCTTC	2 cut(s)	246, 293
Ecl136II	GAGCTC	1 cut(s)	76
Eco130I	CCWWGG	1 cut(s)	111
Eco24I	GRGCYC	2 cut(s)	78, 200
Eco47I	GGWCC	2 cut(s)	29, 339
Eco53kI	GAGCTC	1 cut(s)	76
Eco57I	CTGAAG	1 cut(s)	108
EcoICRI	GAGCTC	1 cut(s)	76
EcoNI	CCTNNNNNAGG	1 cut(s)	48
EcoT14I	CCWWGG	1 cut(s)	111
EcoT38I	GRGCYC	2 cut(s)	78, 200
ErhI	CCWWGG	1 cut(s)	111
FaeI	CATG	1 cut(s)	366
FaiI	YATR	6 cut(s)	20, 48, 101, 136, 351, 364
FatI	CATG	1 cut(s)	362
Fnu4HI	GCNGC	2 cut(s)	105, 358
FokI	GGATG	1 cut(s)	126
FriOI	GRGCYC	2 cut(s)	78, 200
Fsp4HI	GCNGC	2 cut(s)	105, 358
GlaI	GCGC	1 cut(s)	361
GluI	GCNGC	2 cut(s)	105, 358
HhaI	GCGC	1 cut(s)	362
Hin1II	CATG	1 cut(s)	366
Hin6I	GCGC	1 cut(s)	360
HinP1I	GCGC	1 cut(s)	360
HindIII	AAGCTT	1 cut(s)	155
HinfI	GANTC	2 cut(s)	22, 165
HphI	GGTGA	1 cut(s)	33
Hpy166II	GTNNAC	1 cut(s)	251
Hpy188I	TCNGA	2 cut(s)	246, 277
Hpy188III	TCNNGA	1 cut(s)	173
Hpy8I	GTNNAC	1 cut(s)	251
HpyAV	CCTTC	1 cut(s)	44
HpyCH4III	ACNGT	1 cut(s)	220
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	3 cut(s)	203, 251, 353
HpyF10VI	GCNNNNNNNGC	2 cut(s)	82, 359
HpyF3I	CTNAG	4 cut(s)	245, 276, 288, 330
HpySE526I	ACGT	1 cut(s)	15
Hsp92II	CATG	1 cut(s)	366
HspAI	GCGC	1 cut(s)	360
Kzo9I	GATC	1 cut(s)	265
LguI	GCTCTTC	1 cut(s)	246
LmnI	GCTCC	3 cut(s)	73, 112, 195
LpnPI	CCDG	4 cut(s)	99, 213, 273, 280
Lsp1109I	GCAGC	1 cut(s)	116
MaeII	ACGT	1 cut(s)	15
MalI	GATC	1 cut(s)	267
MboI	GATC	1 cut(s)	265
MboII	GAAGA	4 cut(s)	101, 174, 233, 310
MhlI	GDGCHC	4 cut(s)	78, 200, 225, 253
MmeI	TCCRAC	1 cut(s)	51
MnlI	CCTC	2 cut(s)	50, 301
MseI	TTAA	1 cut(s)	227
MspCI	CTTAAG	1 cut(s)	226
MwoI	GCNNNNNNNGC	2 cut(s)	82, 359
NdeII	GATC	1 cut(s)	265
NlaIII	CATG	1 cut(s)	366
NlaIV	GGNNCC	2 cut(s)	197, 341
PciSI	GCTCTTC	1 cut(s)	246
PfeI	GAWTC	2 cut(s)	22, 165
PkrI	GCNGC	2 cut(s)	106, 359
Psp124BI	GAGCTC	1 cut(s)	78
Psp1406I	AACGTT	1 cut(s)	15
PspN4I	GGNNCC	2 cut(s)	197, 341
PspPI	GGNCC	2 cut(s)	29, 339
PstNI	CAGNNNCTG	1 cut(s)	317
SacI	GAGCTC	1 cut(s)	78
SapI	GCTCTTC	1 cut(s)	246
SaqAI	TTAA	1 cut(s)	227
SatI	GCNGC	2 cut(s)	105, 358
Sau3AI	GATC	1 cut(s)	265
Sau96I	GGNCC	2 cut(s)	29, 339
SduI	GDGCHC	4 cut(s)	78, 200, 225, 253
SinI	GGWCC	2 cut(s)	29, 339
SmlI	CTYRAG	2 cut(s)	182, 226
SmoI	CTYRAG	2 cut(s)	182, 226
SsiI	CCGC	3 cut(s)	4, 269, 357
SstI	GAGCTC	1 cut(s)	78
StyI	CCWWGG	1 cut(s)	111
TaaI	ACNGT	1 cut(s)	220
TaiI	ACGT	1 cut(s)	18
TauI	GCSGC	1 cut(s)	360
TfiI	GAWTC	2 cut(s)	22, 165
Tru1I	TTAA	1 cut(s)	227
Tru9I	TTAA	1 cut(s)	227
TscAI	CASTG	2 cut(s)	225, 299
TseI	GCWGC	1 cut(s)	104
TspDTI	ATGAA	1 cut(s)	63
TspRI	CASTG	2 cut(s)	225, 299
Vha464I	CTTAAG	1 cut(s)	226
VneI	GTGCAC	1 cut(s)	249
VpaK11BI	GGWCC	2 cut(s)	29, 339
XagI	CCTNNNNNAGG	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.