Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006236.1

Orthogroup ID

OG0019135

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 3548

Gene Structure 3548 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006236.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 449 bp

ttttttttttggaattctcgcaggaaactcagcgtctcctcagtgaacctgctccgggaattagtgcttcgccatcggaagacaatatgcggtatttcaatgtgatgatccttggcccgactcaatctccgtatgaaggaggagttttcaagttggaactatttttgcctgaagaatatcctatggctgcaccaaaggttcggtttctcactaaaatttatcatcctaacattgacaagctgggaaggatatgccttgacattttgaaagacaagtggagtcctgctctacagatacgaactgttcttctcagtattcaagcacttttgagtgctccaaatcccgatgatccgctctctgagaacatcgctaagcattggaaatcaaatgaggcggaagctgttgaaacagccaaggaatggacccgtttatatgcaagtggtgtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04120 ko04624 map04120 map04624

Pfam Domains

Protein Families

UQ_con

Protein Analysis

148

Amino Acids

16.74

Weight (kDa)

5.22

Isoelectric Point (pI)

48.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16890 AT1G78870 AT1G78870 AT1G78870
rosa_multiflora	Rmu_sc0006236.1_g000001
rosa_samantha	Rh5AG216800 Rh5BG216300 Rh5DG221400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	57
AccB7I	CCANNNNNTGG	1 cut(s)	419
AccBSI	CCGCTC	1 cut(s)	354
AciI	CCGC	3 cut(s)	90, 352, 394
AclWI	GGATC	2 cut(s)	102, 343
AcsI	RAATTY	2 cut(s)	13, 215
AcuI	CTGAAG	1 cut(s)	191
AfiI	CCNNNNNNNGG	3 cut(s)	55, 136, 419
AgsI	TTSAA	5 cut(s)	99, 150, 267, 319, 406
AluBI	AGCT	2 cut(s)	240, 400
AluI	AGCT	2 cut(s)	240, 400
Alw21I	GWGCWC	1 cut(s)	336
Alw26I	GTCTC	1 cut(s)	40
AlwI	GGATC	2 cut(s)	102, 343
AoxI	GGCC	1 cut(s)	114
ApeKI	GCWGC	1 cut(s)	187
ApoI	RAATTY	2 cut(s)	13, 215
AspS9I	GGNCC	2 cut(s)	115, 422
AsuC2I	CCSGG	1 cut(s)	56
AvaII	GGWCC	1 cut(s)	422
BbsI	GAAGAC	1 cut(s)	86
Bbv12I	GWGCWC	1 cut(s)	336
BbvI	GCAGC	1 cut(s)	174
BccI	CCATC	1 cut(s)	81
BcnI	CCSGG	1 cut(s)	56
BcoDI	GTCTC	1 cut(s)	40
BfmI	CTRYAG	1 cut(s)	289
BfuAI	ACCTGC	1 cut(s)	57
BisI	GCNGC	1 cut(s)	188
BlpI	GCTNAGC	1 cut(s)	371
BlsI	GCNGC	1 cut(s)	189
Bme1390I	CCNGG	1 cut(s)	56
Bme18I	GGWCC	1 cut(s)	422
BmgT120I	GGNCC	2 cut(s)	115, 422
BmiI	GGNNCC	1 cut(s)	424
BmrFI	CCNGG	1 cut(s)	56
BpiI	GAAGAC	1 cut(s)	86
BplI	GAGNNNNNCTC	2 cut(s)	270, 302
Bpu1102I	GCTNAGC	1 cut(s)	371
BpuMI	CCSGG	1 cut(s)	56
BsaJI	CCNNGG	2 cut(s)	111, 413
BsaXI	ACNNNNNCTCC	2 cut(s)	111, 141
Bsc4I	CCNNNNNNNGG	3 cut(s)	55, 136, 419
BseDI	CCNNGG	2 cut(s)	111, 413
BseGI	GGATG	1 cut(s)	222
BseLI	CCNNNNNNNGG	3 cut(s)	55, 136, 419
BseMII	CTCAG	4 cut(s)	43, 54, 324, 350
BseRI	GAGGAG	2 cut(s)	28, 155
BseXI	GCAGC	1 cut(s)	174
BseYI	CCCAGC	1 cut(s)	240
BsgI	GTGCAG	1 cut(s)	173
BshFI	GGCC	1 cut(s)	116
BsiHKAI	GWGCWC	1 cut(s)	336
BsiSI	CCGG	1 cut(s)	55
BslI	CCNNNNNNNGG	3 cut(s)	55, 136, 419
BsmAI	GTCTC	1 cut(s)	40
BsmBI	CGTCTC	1 cut(s)	40
BsnI	GGCC	1 cut(s)	116
Bsp1286I	GDGCHC	1 cut(s)	336
Bsp143I	GATC	2 cut(s)	107, 348
Bsp1720I	GCTNAGC	1 cut(s)	371
BspACI	CCGC	3 cut(s)	90, 352, 394
BspANI	GGCC	1 cut(s)	116
BspCNI	CTCAG	4 cut(s)	42, 53, 323, 351
BspLI	GGNNCC	1 cut(s)	424
BspMI	ACCTGC	1 cut(s)	57
BspPI	GGATC	2 cut(s)	102, 343
BsrBI	CCGCTC	1 cut(s)	354
BssECI	CCNNGG	2 cut(s)	111, 413
BssMI	GATC	2 cut(s)	107, 348
BssT1I	CCWWGG	2 cut(s)	111, 413
Bst4CI	ACNGT	1 cut(s)	303
BstDEI	CTNAG	5 cut(s)	29, 40, 310, 359, 371
BstF5I	GGATG	1 cut(s)	222
BstKTI	GATC	2 cut(s)	110, 351
BstMAI	GTCTC	1 cut(s)	40
BstMBI	GATC	2 cut(s)	107, 348
BstSCI	CCNGG	1 cut(s)	54
BstSFI	CTRYAG	1 cut(s)	289
BstV1I	GCAGC	1 cut(s)	174
BstV2I	GAAGAC	1 cut(s)	86
BsuRI	GGCC	1 cut(s)	116
BtgZI	GCGATG	1 cut(s)	351
BtsCI	GGATG	1 cut(s)	222
BtsIMutI	CAGTG	1 cut(s)	48
BveI	ACCTGC	1 cut(s)	57
Cfr13I	GGNCC	2 cut(s)	115, 422
CseI	GACGC	1 cut(s)	22
CviJI	RGCY	5 cut(s)	116, 187, 240, 400, 412
CviKI_1	RGCY	5 cut(s)	116, 187, 240, 400, 412
DdeI	CTNAG	5 cut(s)	29, 40, 310, 359, 371
DpnI	GATC	2 cut(s)	109, 350
DpnII	GATC	2 cut(s)	107, 348
EciI	GGCGGA	1 cut(s)	409
Eco130I	CCWWGG	2 cut(s)	111, 413
Eco47I	GGWCC	1 cut(s)	422
Eco57I	CTGAAG	1 cut(s)	191
EcoRI	GAATTC	1 cut(s)	13
EcoT14I	CCWWGG	2 cut(s)	111, 413
ErhI	CCWWGG	2 cut(s)	111, 413
Esp3I	CGTCTC	1 cut(s)	40
FaiI	YATR	6 cut(s)	88, 134, 184, 252, 432, 434
Fnu4HI	GCNGC	1 cut(s)	188
FokI	GGATG	1 cut(s)	209
Fsp4HI	GCNGC	1 cut(s)	188
GluI	GCNGC	1 cut(s)	188
GsaI	CCCAGC	1 cut(s)	244
HaeIII	GGCC	1 cut(s)	116
HapII	CCGG	1 cut(s)	55
HgaI	GACGC	1 cut(s)	22
HinfI	GANTC	2 cut(s)	120, 279
HpaII	CCGG	1 cut(s)	55
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	2 cut(s)	78, 360
Hpy188III	TCNNGA	1 cut(s)	343
Hpy8I	GTNNAC	1 cut(s)	46
HpyAV	CCTTC	2 cut(s)	130, 239
HpyCH4III	ACNGT	1 cut(s)	303
HpyCH4V	TGCA	2 cut(s)	190, 436
HpyF3I	CTNAG	5 cut(s)	29, 40, 310, 359, 371
Kzo9I	GATC	2 cut(s)	107, 348
LmnI	GCTCC	2 cut(s)	57, 339
LpnPI	CCDG	6 cut(s)	7, 62, 68, 182, 226, 296
Lsp1109I	GCAGC	1 cut(s)	174
MalI	GATC	2 cut(s)	109, 350
MbiI	CCGCTC	1 cut(s)	354
MboI	GATC	2 cut(s)	107, 348
MboII	GAAGA	3 cut(s)	91, 184, 298
MhlI	GDGCHC	1 cut(s)	336
MluCI	AATT	3 cut(s)	13, 59, 215
MlyI	GAGTC	2 cut(s)	114, 288
MmeI	TCCRAC	1 cut(s)	134
MnlI	CCTC	3 cut(s)	49, 133, 384
MspI	CCGG	1 cut(s)	55
MspR9I	CCNGG	1 cut(s)	56
NciI	CCSGG	1 cut(s)	56
NdeII	GATC	2 cut(s)	107, 348
NlaIV	GGNNCC	1 cut(s)	424
PflMI	CCANNNNNTGG	1 cut(s)	419
PfoI	TCCNGGA	1 cut(s)	54
PkrI	GCNGC	1 cut(s)	189
PleI	GAGTC	2 cut(s)	114, 287
PpsI	GAGTC	2 cut(s)	114, 287
PspFI	CCCAGC	1 cut(s)	240
PspN4I	GGNNCC	1 cut(s)	424
PspPI	GGNCC	2 cut(s)	115, 422
SatI	GCNGC	1 cut(s)	188
Sau3AI	GATC	2 cut(s)	107, 348
Sau96I	GGNCC	2 cut(s)	115, 422
SchI	GAGTC	2 cut(s)	114, 288
ScrFI	CCNGG	1 cut(s)	56
SduI	GDGCHC	1 cut(s)	336
SetI	ASST	4 cut(s)	51, 200, 242, 402
SfcI	CTRYAG	1 cut(s)	289
SinI	GGWCC	1 cut(s)	422
Sse9I	AATT	3 cut(s)	13, 59, 215
SsiI	CCGC	3 cut(s)	90, 352, 394
StyD4I	CCNGG	1 cut(s)	54
StyI	CCWWGG	2 cut(s)	111, 413
TaaI	ACNGT	1 cut(s)	303
TasI	AATT	3 cut(s)	13, 59, 215
TscAI	CASTG	1 cut(s)	48
TseI	GCWGC	1 cut(s)	187
TspDTI	ATGAA	1 cut(s)	149
TspGWI	ACGGA	1 cut(s)	119
TspRI	CASTG	1 cut(s)	48
Van91I	CCANNNNNTGG	1 cut(s)	419
VpaK11BI	GGWCC	1 cut(s)	422
XapI	RAATTY	2 cut(s)	13, 215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.