Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013948

Physical Location & Seq

Genomic Coordinates Reverse (-)

6495844 .. 6496491

Gene Structure 648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G18835.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGAAGAAGAGGCAAGTGGTGATAAAACAGAGAAAAAGCTCTTACACTATGACTTCTTCTTCAAGCAACGTCCGTTACGTTGAGTGTCAGAAGAATCATGCCGCTAATATTGGCGGCTACGCTGTTGACGGTTGCCGGGAGTTTATGGCAAGCGGCGGAGATGATGCTTTGACGTGTGCTGCCTGTGGCTGTCACCGGAATTTTCACCGGAGGGAAGTTGACACGGAGGTTGTTTGTGAGTATTCTCCTCCGAATGCAAACAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048509 GO:0050789 GO:0050793 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZF-HD_dimer

Protein Analysis

88

Amino Acids

9.75

Weight (kDa)

8.59

Isoelectric Point (pI)

57.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZF-HD_dimer	PF04770	23 - 73	2.5e-27	ZF-HD protein dimerisation region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0013948)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18835 AT1G74660 AT1G74660
malus_domestica	MD06G1193200.v1.1 MD14G1200200.v1.1
prunus_persica	Prupe.5G193300_v2.0.a1
pyrus_communis	pycom14g16590
rosa_chinensis	RchiOBHm_Chr7g0181371
rosa_laevigata	RLG00000005195
rosa_multiflora	Rmu_sc0002060.1_g000011 Rmu_sc0004621.1_g000012
rosa_roxburghii	Rroxscaffold_3G00272070
rosa_rugosa	Rorug06G0440500
rosa_samantha	Rh7AG042700 Rh7BG041900 Rh7DG042500
rosa_wichuraiana	Rw7G003550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	102, 114, 153, 156
AcsI	RAATTY	1 cut(s)	199
AflIII	ACRYGT	1 cut(s)	173
AgsI	TTSAA	1 cut(s)	63
AjiI	CACGTC	1 cut(s)	174
AluBI	AGCT	1 cut(s)	39
AluI	AGCT	1 cut(s)	39
ApeKI	GCWGC	1 cut(s)	179
ApoI	RAATTY	1 cut(s)	199
AsuC2I	CCSGG	1 cut(s)	137
AsuHPI	GGTGA	3 cut(s)	31, 185, 197
BbvI	GCAGC	1 cut(s)	166
BcnI	CCSGG	1 cut(s)	137
BisI	GCNGC	4 cut(s)	102, 115, 154, 180
BlsI	GCNGC	4 cut(s)	103, 116, 155, 181
Bme1390I	CCNGG	1 cut(s)	137
BmgBI	CACGTC	1 cut(s)	174
BmrFI	CCNGG	1 cut(s)	137
BmsI	GCATC	1 cut(s)	154
BpuMI	CCSGG	1 cut(s)	137
BsaWI	WCCGGW	2 cut(s)	195, 207
BseRI	GAGGAG	1 cut(s)	237
BseXI	GCAGC	1 cut(s)	166
BsiSI	CCGG	3 cut(s)	136, 196, 208
BsmI	GAATGC	1 cut(s)	259
BspACI	CCGC	4 cut(s)	102, 114, 153, 156
Bst4CI	ACNGT	1 cut(s)	131
Bst6I	CTCTTC	1 cut(s)	2
BstC8I	GCNNGC	1 cut(s)	151
BstSCI	CCNGG	1 cut(s)	135
BstV1I	GCAGC	1 cut(s)	166
BtrI	CACGTC	1 cut(s)	174
Cac8I	GCNNGC	1 cut(s)	151
CviAII	CATG	1 cut(s)	98
CviJI	RGCY	3 cut(s)	39, 117, 189
CviKI_1	RGCY	3 cut(s)	39, 117, 189
Eam1104I	CTCTTC	1 cut(s)	2
EarI	CTCTTC	1 cut(s)	2
EciI	GGCGGA	1 cut(s)	171
FaeI	CATG	1 cut(s)	101
FaiI	YATR	3 cut(s)	50, 99, 146
FatI	CATG	1 cut(s)	97
Fnu4HI	GCNGC	4 cut(s)	102, 115, 154, 180
Fsp4HI	GCNGC	4 cut(s)	102, 115, 154, 180
GluI	GCNGC	4 cut(s)	102, 115, 154, 180
HapII	CCGG	3 cut(s)	136, 196, 208
Hin1II	CATG	1 cut(s)	101
HincII	GTYRAC	2 cut(s)	127, 220
HindII	GTYRAC	2 cut(s)	127, 220
HinfI	GANTC	1 cut(s)	94
HpaII	CCGG	3 cut(s)	136, 196, 208
HphI	GGTGA	3 cut(s)	31, 185, 197
Hpy166II	GTNNAC	2 cut(s)	127, 220
Hpy188I	TCNGA	2 cut(s)	90, 252
Hpy8I	GTNNAC	2 cut(s)	127, 220
HpyCH4III	ACNGT	1 cut(s)	131
HpyCH4IV	ACGT	3 cut(s)	69, 78, 173
HpyCH4V	TGCA	1 cut(s)	257
HpySE526I	ACGT	3 cut(s)	69, 78, 173
Hsp92II	CATG	1 cut(s)	101
LpnPI	CCDG	4 cut(s)	149, 196, 209, 221
Lsp1109I	GCAGC	1 cut(s)	166
LweI	GCATC	1 cut(s)	154
MaeII	ACGT	3 cut(s)	69, 78, 173
MaeIII	GTNAC	2 cut(s)	74, 191
MboII	GAAGA	5 cut(s)	16, 19, 48, 51, 103
MluCI	AATT	1 cut(s)	199
MnlI	CCTC	4 cut(s)	3, 204, 220, 258
MspI	CCGG	3 cut(s)	136, 196, 208
MspR9I	CCNGG	1 cut(s)	137
Mva1269I	GAATGC	1 cut(s)	259
NciI	CCSGG	1 cut(s)	137
NlaIII	CATG	1 cut(s)	101
NmuCI	GTSAC	1 cut(s)	191
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PctI	GAATGC	1 cut(s)	259
PfeI	GAWTC	1 cut(s)	94
PkrI	GCNGC	4 cut(s)	103, 116, 155, 181
SatI	GCNGC	4 cut(s)	102, 115, 154, 180
ScrFI	CCNGG	1 cut(s)	137
SetI	ASST	5 cut(s)	41, 72, 81, 176, 231
SfaNI	GCATC	1 cut(s)	154
Sse9I	AATT	1 cut(s)	199
SsiI	CCGC	4 cut(s)	102, 114, 153, 156
SspI	AATATT	1 cut(s)	109
StyD4I	CCNGG	1 cut(s)	135
TaaI	ACNGT	1 cut(s)	131
TaiI	ACGT	3 cut(s)	72, 81, 176
TasI	AATT	1 cut(s)	199
TauI	GCSGC	3 cut(s)	104, 117, 156
TfiI	GAWTC	1 cut(s)	94
TseFI	GTSAC	1 cut(s)	191
TseI	GCWGC	1 cut(s)	179
Tsp45I	GTSAC	1 cut(s)	191
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	62, 239
XapI	RAATTY	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.