Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013948

Physical Location & Seq

Genomic Coordinates Reverse (-)

28045472 .. 28048289

Gene Structure 2818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G74660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGATGAAGAAGAGACAGATGGTAATCAAGCAGAGATCAAGAAACTCCAACACATCTTCCTCTTGGACTACTACTTCGTCTTCTTCTTCTTCCTCCGAGATCAGTAACGTCCGTTACGTGGAGTGTCAGAAGAATCACGCTGCTAACATCGGAGGCTACGCCGTCGACGGTTGCCGTGAGTTCATGGCCGCCGGAGTTGAAGGAACCGTTGATGCTTTGAGATGCGCGGCTTGTGGTTGTCACCGGAATTTTCACCGGAAGGAAGTTGATACTGAGGTTGTTTGTGAGTATTCTCCACCTAACGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009737 GO:0009739 GO:0009741 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0010022 GO:0010033 GO:0010073 GO:0010468 GO:0010556 GO:0010558 GO:0010582 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0035670 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043392 GO:0044092 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048507 GO:0048509 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051098 GO:0051100 GO:0051101 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061458 GO:0065007 GO:0065009 GO:0080090 GO:0090567 GO:0097159 GO:0097305 GO:0099402 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZF-HD_dimer

Protein Analysis

102

Amino Acids

11.21

Weight (kDa)

8.6

Isoelectric Point (pI)

61.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZF-HD_dimer	PF04770	36 - 89	4e-30	ZF-HD protein dimerisation region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0013948)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18835 AT1G74660 AT1G74660
malus_domestica	MD06G1193200.v1.1 MD14G1200200.v1.1
prunus_persica	Prupe.5G193300_v2.0.a1
pyrus_communis	pycom14g16590
rosa_chinensis	RchiOBHm_Chr7g0181371
rosa_laevigata	RLG00000005195
rosa_multiflora	Rmu_sc0002060.1_g000011 Rmu_sc0004621.1_g000012
rosa_roxburghii	Rroxscaffold_3G00272070
rosa_rugosa	Rorug06G0440500
rosa_samantha	Rh7AG042700 Rh7BG041900 Rh7DG042500
rosa_wichuraiana	Rw7G003550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	165
AccII	CGCG	1 cut(s)	227
AciI	CCGC	2 cut(s)	189, 227
AcoI	YGGCCR	1 cut(s)	186
AcsI	RAATTY	1 cut(s)	247
AfiI	CCNNNNNNNGG	1 cut(s)	118
AgsI	TTSAA	1 cut(s)	200
Alw26I	GTCTC	1 cut(s)	7
AoxI	GGCC	1 cut(s)	186
ApeKI	GCWGC	1 cut(s)	140
ApoI	RAATTY	1 cut(s)	247
ArsI	GACNNNNNNTTYG	2 cut(s)	58, 90
AspLEI	GCGC	1 cut(s)	227
AsuHPI	GGTGA	2 cut(s)	233, 245
BaeI	ACNNNNGTAYC	2 cut(s)	261, 294
BbsI	GAAGAC	1 cut(s)	72
BbvI	GCAGC	1 cut(s)	127
BccI	CCATC	1 cut(s)	13
BceAI	ACGGC	2 cut(s)	146, 159
BcoDI	GTCTC	1 cut(s)	7
BisI	GCNGC	3 cut(s)	141, 189, 228
BlsI	GCNGC	3 cut(s)	142, 190, 229
BmiI	GGNNCC	1 cut(s)	205
BmsI	GCATC	2 cut(s)	202, 212
BpiI	GAAGAC	1 cut(s)	72
BsaAI	YACGTR	1 cut(s)	118
BsaBI	GATNNNNATC	1 cut(s)	23
BsaWI	WCCGGW	2 cut(s)	243, 255
Bsc4I	CCNNNNNNNGG	1 cut(s)	118
Bse8I	GATNNNNATC	1 cut(s)	23
BseJI	GATNNNNATC	1 cut(s)	23
BseLI	CCNNNNNNNGG	1 cut(s)	118
BseMII	CTCAG	1 cut(s)	264
BseXI	GCAGC	1 cut(s)	127
Bsh1236I	CGCG	1 cut(s)	227
BshFI	GGCC	1 cut(s)	188
BsiSI	CCGG	3 cut(s)	192, 244, 256
BslI	CCNNNNNNNGG	1 cut(s)	118
BsmAI	GTCTC	1 cut(s)	7
BsnI	GGCC	1 cut(s)	188
Bsp143I	GATC	2 cut(s)	35, 99
BspACI	CCGC	2 cut(s)	189, 227
BspANI	GGCC	1 cut(s)	188
BspCNI	CTCAG	1 cut(s)	265
BspFNI	CGCG	1 cut(s)	227
BspLI	GGNNCC	1 cut(s)	205
BssMI	GATC	2 cut(s)	35, 99
Bst4CI	ACNGT	2 cut(s)	170, 208
Bst6I	CTCTTC	1 cut(s)	5
BstBAI	YACGTR	1 cut(s)	118
BstDEI	CTNAG	1 cut(s)	273
BstFNI	CGCG	1 cut(s)	227
BstHHI	GCGC	1 cut(s)	227
BstKTI	GATC	2 cut(s)	38, 102
BstMAI	GTCTC	1 cut(s)	7
BstMBI	GATC	2 cut(s)	35, 99
BstUI	CGCG	1 cut(s)	227
BstV1I	GCAGC	1 cut(s)	127
BstV2I	GAAGAC	1 cut(s)	72
BsuRI	GGCC	1 cut(s)	188
CfoI	GCGC	1 cut(s)	227
CviAII	CATG	1 cut(s)	184
CviJI	RGCY	3 cut(s)	156, 188, 230
CviKI_1	RGCY	3 cut(s)	156, 188, 230
DdeI	CTNAG	1 cut(s)	273
DpnI	GATC	2 cut(s)	37, 101
DpnII	GATC	2 cut(s)	35, 99
EaeI	YGGCCR	1 cut(s)	186
Eam1104I	CTCTTC	1 cut(s)	5
EarI	CTCTTC	1 cut(s)	5
FaeI	CATG	1 cut(s)	187
FaiI	YATR	1 cut(s)	185
FatI	CATG	1 cut(s)	183
FblI	GTMKAC	1 cut(s)	165
Fnu4HI	GCNGC	3 cut(s)	141, 189, 228
Fsp4HI	GCNGC	3 cut(s)	141, 189, 228
GlaI	GCGC	1 cut(s)	226
GluI	GCNGC	3 cut(s)	141, 189, 228
HaeIII	GGCC	1 cut(s)	188
HapII	CCGG	3 cut(s)	192, 244, 256
HhaI	GCGC	1 cut(s)	227
Hin1II	CATG	1 cut(s)	187
Hin6I	GCGC	1 cut(s)	225
HinP1I	GCGC	1 cut(s)	225
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HinfI	GANTC	1 cut(s)	133
HpaII	CCGG	3 cut(s)	192, 244, 256
HphI	GGTGA	2 cut(s)	233, 245
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	3 cut(s)	97, 129, 152
Hpy188III	TCNNGA	1 cut(s)	39
Hpy8I	GTNNAC	1 cut(s)	166
Hpy99I	CGWCG	2 cut(s)	167, 170
HpyAV	CCTTC	2 cut(s)	194, 253
HpyCH4III	ACNGT	2 cut(s)	170, 208
HpyCH4IV	ACGT	2 cut(s)	108, 117
HpyF3I	CTNAG	1 cut(s)	273
HpySE526I	ACGT	2 cut(s)	108, 117
Hsp92II	CATG	1 cut(s)	187
HspAI	GCGC	1 cut(s)	225
Kzo9I	GATC	2 cut(s)	35, 99
LpnPI	CCDG	3 cut(s)	205, 257, 269
Lsp1109I	GCAGC	1 cut(s)	127
LweI	GCATC	2 cut(s)	202, 212
MaeII	ACGT	2 cut(s)	108, 117
MaeIII	GTNAC	3 cut(s)	104, 113, 239
MalI	GATC	2 cut(s)	37, 101
MboI	GATC	2 cut(s)	35, 99
MboII	GAAGA	8 cut(s)	19, 22, 48, 72, 75, 78, 81, 142
MluCI	AATT	1 cut(s)	247
MmeI	TCCRAC	1 cut(s)	72
MnlI	CCTC	4 cut(s)	70, 103, 146, 268
MspI	CCGG	3 cut(s)	192, 244, 256
MvnI	CGCG	1 cut(s)	227
NdeII	GATC	2 cut(s)	35, 99
NlaIII	CATG	1 cut(s)	187
NlaIV	GGNNCC	1 cut(s)	205
NmuCI	GTSAC	1 cut(s)	239
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PfeI	GAWTC	1 cut(s)	133
PkrI	GCNGC	3 cut(s)	142, 190, 229
Ppu21I	YACGTR	1 cut(s)	118
PspN4I	GGNNCC	1 cut(s)	205
SalI	GTCGAC	1 cut(s)	164
SatI	GCNGC	3 cut(s)	141, 189, 228
Sau3AI	GATC	2 cut(s)	35, 99
SetI	ASST	4 cut(s)	111, 120, 279, 301
SfaNI	GCATC	2 cut(s)	202, 212
SgrDI	CGTCGACG	1 cut(s)	164
Sse9I	AATT	1 cut(s)	247
SsiI	CCGC	2 cut(s)	189, 227
TaaI	ACNGT	2 cut(s)	170, 208
TaiI	ACGT	2 cut(s)	111, 120
TaqI	TCGA	1 cut(s)	165
TasI	AATT	1 cut(s)	247
TauI	GCSGC	2 cut(s)	191, 230
TfiI	GAWTC	1 cut(s)	133
TseFI	GTSAC	1 cut(s)	239
TseI	GCWGC	1 cut(s)	140
Tsp45I	GTSAC	1 cut(s)	239
TspDTI	ATGAA	2 cut(s)	20, 172
TspGWI	ACGGA	1 cut(s)	101
XapI	RAATTY	1 cut(s)	247
XmiI	GTMKAC	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.