Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0013948

Physical Location & Seq

Genomic Coordinates Forward (+)

32853856 .. 32854152

Gene Structure 297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1193200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGAAGAAGCGTCAAGTGGTGGTGAAACGAGATAGGTCGGAAAGGAACTCGAGTACTTCATCTTCAATGGTGAGAATTGTGAGGTATGGCGAGTGCCAGAAGAATCATGCTGCAAAATTAGGAGGGTATGCTATCGATGGATGTAGAGAATTCATGGCAAGTGGTGAGGAGGGGACAACTGAGGCTCTTACATGCGCTGCTTGTGGTTGCCACAGAAGTTTTCACAGAAAAGAAGTGGAAACTGAGGTTGTTTGTGAGTATTCTCCACCCAGTTCTTATCGCAAATGGTGTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009737 GO:0009739 GO:0009741 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043392 GO:0044092 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048509 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051098 GO:0051100 GO:0051101 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:0097159 GO:0097305 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZF-HD_dimer

Protein Analysis

99

Amino Acids

11.04

Weight (kDa)

8.92

Isoelectric Point (pI)

63.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZF-HD_dimer	PF04770	27 - 79	1.1e-30	ZF-HD protein dimerisation region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013948)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18835 AT1G74660 AT1G74660
malus_domestica	MD06G1193200.v1.1 MD14G1200200.v1.1
prunus_persica	Prupe.5G193300_v2.0.a1
pyrus_communis	pycom14g16590
rosa_chinensis	RchiOBHm_Chr7g0181371
rosa_laevigata	RLG00000005195
rosa_multiflora	Rmu_sc0002060.1_g000011 Rmu_sc0004621.1_g000012
rosa_roxburghii	Rroxscaffold_3G00272070
rosa_rugosa	Rorug06G0440500
rosa_samantha	Rh7AG042700 Rh7BG041900 Rh7DG042500
rosa_wichuraiana	Rw7G003550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	149
AfaI	GTAC	2 cut(s)	55, 292
AgsI	TTSAA	1 cut(s)	66
Ama87I	CYCGRG	1 cut(s)	49
ApeKI	GCWGC	2 cut(s)	110, 197
ApoI	RAATTY	1 cut(s)	149
AspLEI	GCGC	1 cut(s)	197
AsuHPI	GGTGA	3 cut(s)	34, 82, 176
AvaI	CYCGRG	1 cut(s)	49
BarI	GAAGNNNNNNTAC	2 cut(s)	46, 78
BbvI	GCAGC	2 cut(s)	97, 184
BccI	CCATC	1 cut(s)	131
BisI	GCNGC	2 cut(s)	111, 198
BlsI	GCNGC	2 cut(s)	112, 199
BmcAI	AGTACT	1 cut(s)	55
BmeT110I	CYCGRG	1 cut(s)	49
BmrI	ACTGGG	1 cut(s)	264
BmuI	ACTGGG	1 cut(s)	264
Bsa29I	ATCGAT	1 cut(s)	135
Bse1I	ACTGG	1 cut(s)	270
BseCI	ATCGAT	1 cut(s)	135
BseGI	GGATG	1 cut(s)	146
BseMII	CTCAG	2 cut(s)	171, 234
BseNI	ACTGG	1 cut(s)	270
BseRI	GAGGAG	1 cut(s)	182
BseXI	GCAGC	2 cut(s)	97, 184
BshVI	ATCGAT	1 cut(s)	135
BsiHKCI	CYCGRG	1 cut(s)	49
BslFI	GGGAC	1 cut(s)	187
BsmFI	GGGAC	1 cut(s)	187
BsoBI	CYCGRG	1 cut(s)	49
BspCNI	CTCAG	2 cut(s)	172, 235
BspDI	ATCGAT	1 cut(s)	135
BsrI	ACTGG	1 cut(s)	270
BstDEI	CTNAG	2 cut(s)	180, 243
BstF5I	GGATG	1 cut(s)	146
BstHHI	GCGC	1 cut(s)	197
BstNSI	RCATGY	1 cut(s)	195
BstV1I	GCAGC	2 cut(s)	97, 184
Bsu15I	ATCGAT	1 cut(s)	135
BsuTUI	ATCGAT	1 cut(s)	135
BtsCI	GGATG	1 cut(s)	146
CfoI	GCGC	1 cut(s)	197
ClaI	ATCGAT	1 cut(s)	135
Csp6I	GTAC	2 cut(s)	54, 291
CviAII	CATG	3 cut(s)	107, 154, 192
CviJI	RGCY	1 cut(s)	185
CviKI_1	RGCY	1 cut(s)	185
CviQI	GTAC	2 cut(s)	54, 291
DdeI	CTNAG	2 cut(s)	180, 243
Eco88I	CYCGRG	1 cut(s)	49
EcoRI	GAATTC	1 cut(s)	149
FaeI	CATG	3 cut(s)	110, 157, 195
FaiI	YATR	5 cut(s)	87, 108, 129, 155, 193
FaqI	GGGAC	1 cut(s)	187
FatI	CATG	3 cut(s)	106, 153, 191
Fnu4HI	GCNGC	2 cut(s)	111, 198
FokI	GGATG	1 cut(s)	153
Fsp4HI	GCNGC	2 cut(s)	111, 198
GlaI	GCGC	1 cut(s)	196
GluI	GCNGC	2 cut(s)	111, 198
HhaI	GCGC	1 cut(s)	197
Hin1II	CATG	3 cut(s)	110, 157, 195
Hin6I	GCGC	1 cut(s)	195
HinP1I	GCGC	1 cut(s)	195
HinfI	GANTC	1 cut(s)	103
HphI	GGTGA	3 cut(s)	34, 82, 176
Hpy166II	GTNNAC	1 cut(s)	291
Hpy188I	TCNGA	1 cut(s)	40
Hpy8I	GTNNAC	1 cut(s)	291
HpyCH4V	TGCA	1 cut(s)	113
HpyF3I	CTNAG	2 cut(s)	180, 243
Hsp92II	CATG	3 cut(s)	110, 157, 195
HspAI	GCGC	1 cut(s)	195
LpnPI	CCDG	2 cut(s)	110, 283
Lsp1109I	GCAGC	2 cut(s)	97, 184
MboII	GAAGA	3 cut(s)	16, 54, 112
MluCI	AATT	3 cut(s)	75, 116, 149
MmeI	TCCRAC	1 cut(s)	18
MnlI	CCTC	6 cut(s)	75, 116, 160, 163, 175, 238
MseI	TTAA	1 cut(s)	295
NlaIII	CATG	3 cut(s)	110, 157, 195
NspI	RCATGY	1 cut(s)	195
PaeR7I	CTCGAG	1 cut(s)	49
PfeI	GAWTC	1 cut(s)	103
PkrI	GCNGC	2 cut(s)	112, 199
PspXI	VCTCGAGB	1 cut(s)	49
RsaI	GTAC	2 cut(s)	55, 292
RsaNI	GTAC	2 cut(s)	54, 291
SaqAI	TTAA	1 cut(s)	295
SatI	GCNGC	2 cut(s)	111, 198
ScaI	AGTACT	1 cut(s)	55
SetI	ASST	3 cut(s)	38, 86, 249
Sfr274I	CTCGAG	1 cut(s)	49
SlaI	CTCGAG	1 cut(s)	49
SmlI	CTYRAG	1 cut(s)	49
SmoI	CTYRAG	1 cut(s)	49
Sse9I	AATT	3 cut(s)	75, 116, 149
TaqI	TCGA	2 cut(s)	50, 135
TasI	AATT	3 cut(s)	75, 116, 149
TatI	WGTACW	2 cut(s)	53, 290
TfiI	GAWTC	1 cut(s)	103
Tru1I	TTAA	1 cut(s)	295
Tru9I	TTAA	1 cut(s)	295
TseI	GCWGC	2 cut(s)	110, 197
TspDTI	ATGAA	3 cut(s)	17, 48, 142
XapI	RAATTY	1 cut(s)	149
XceI	RCATGY	1 cut(s)	195
XhoI	CTCGAG	1 cut(s)	49
ZrmI	AGTACT	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.