Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0013948

Physical Location & Seq

Genomic Coordinates Forward (+)

28972850 .. 28973134

Gene Structure 285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1200200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGAAGAAGCGCCAAGTGGTGGTGAAACGAGATAGATCGGGGAGGAGCTCAAGTACTTCATCTTCAATGGTGCGAACTGTGAGGTATTGCGAGTGCCAGAAGAATCATGCTGCAAATTTAGGAGGGTATGCTGTTGACGGGTGTAGAGAATTCATGGCAAGTGGTGAGGATGGGACGACTGAGGCTCTTACATGCGCTGCTTGTGGTTGCCACAGAAATTTTCACAGAAGGGAAGTGGAAACTGAGGTTGTTTGTGAGTATTCTCCACCCAATTCTTATCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009737 GO:0009739 GO:0009741 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043392 GO:0044092 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048509 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051098 GO:0051100 GO:0051101 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:0097159 GO:0097305 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZF-HD_dimer

Protein Analysis

95

Amino Acids

10.5

Weight (kDa)

8.77

Isoelectric Point (pI)

63.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZF-HD_dimer	PF04770	27 - 79	3.1e-30	ZF-HD protein dimerisation region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0013948)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18835 AT1G74660 AT1G74660
malus_domestica	MD06G1193200.v1.1 MD14G1200200.v1.1
prunus_persica	Prupe.5G193300_v2.0.a1
pyrus_communis	pycom14g16590
rosa_chinensis	RchiOBHm_Chr7g0181371
rosa_laevigata	RLG00000005195
rosa_multiflora	Rmu_sc0002060.1_g000011 Rmu_sc0004621.1_g000012
rosa_roxburghii	Rroxscaffold_3G00272070
rosa_rugosa	Rorug06G0440500
rosa_samantha	Rh7AG042700 Rh7BG041900 Rh7DG042500
rosa_wichuraiana	Rw7G003550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	19
AcsI	RAATTY	3 cut(s)	115, 149, 217
AfaI	GTAC	1 cut(s)	55
AfiI	CCNNNNNNNGG	1 cut(s)	19
AgsI	TTSAA	1 cut(s)	66
AluBI	AGCT	1 cut(s)	48
AluI	AGCT	1 cut(s)	48
Alw21I	GWGCWC	1 cut(s)	50
ApeKI	GCWGC	2 cut(s)	110, 197
ApoI	RAATTY	3 cut(s)	115, 149, 217
AspLEI	GCGC	2 cut(s)	12, 197
AsuHPI	GGTGA	2 cut(s)	34, 176
BanII	GRGCYC	1 cut(s)	50
BarI	GAAGNNNNNNTAC	2 cut(s)	46, 78
Bbv12I	GWGCWC	1 cut(s)	50
BbvI	GCAGC	2 cut(s)	97, 184
BccI	CCATC	1 cut(s)	164
BfoI	RGCGCY	1 cut(s)	13
BisI	GCNGC	2 cut(s)	111, 198
BlsI	GCNGC	2 cut(s)	112, 199
BmcAI	AGTACT	1 cut(s)	55
BpuEI	CTTGAG	1 cut(s)	34
BsaXI	ACNNNNNCTCC	2 cut(s)	37, 67
Bsc4I	CCNNNNNNNGG	1 cut(s)	19
BseGI	GGATG	1 cut(s)	175
BseLI	CCNNNNNNNGG	1 cut(s)	19
BseMII	CTCAG	2 cut(s)	171, 234
BseRI	GAGGAG	1 cut(s)	58
BseXI	GCAGC	2 cut(s)	97, 184
BsiHKAI	GWGCWC	1 cut(s)	50
BslFI	GGGAC	1 cut(s)	187
BslI	CCNNNNNNNGG	1 cut(s)	19
BsmFI	GGGAC	1 cut(s)	187
Bsp1286I	GDGCHC	1 cut(s)	50
Bsp143I	GATC	1 cut(s)	35
BspCNI	CTCAG	2 cut(s)	172, 235
BssMI	GATC	1 cut(s)	35
Bst4CI	ACNGT	1 cut(s)	79
BstDEI	CTNAG	2 cut(s)	180, 243
BstF5I	GGATG	1 cut(s)	175
BstH2I	RGCGCY	1 cut(s)	13
BstHHI	GCGC	2 cut(s)	12, 197
BstKTI	GATC	1 cut(s)	38
BstMBI	GATC	1 cut(s)	35
BstNSI	RCATGY	1 cut(s)	195
BstV1I	GCAGC	2 cut(s)	97, 184
BtsCI	GGATG	1 cut(s)	175
CfoI	GCGC	2 cut(s)	12, 197
Csp6I	GTAC	1 cut(s)	54
CviAII	CATG	3 cut(s)	107, 154, 192
CviJI	RGCY	2 cut(s)	48, 185
CviKI_1	RGCY	2 cut(s)	48, 185
CviQI	GTAC	1 cut(s)	54
DdeI	CTNAG	2 cut(s)	180, 243
DpnI	GATC	1 cut(s)	37
DpnII	GATC	1 cut(s)	35
Ecl136II	GAGCTC	1 cut(s)	48
Eco24I	GRGCYC	1 cut(s)	50
Eco53kI	GAGCTC	1 cut(s)	48
EcoICRI	GAGCTC	1 cut(s)	48
EcoRI	GAATTC	1 cut(s)	149
EcoT38I	GRGCYC	1 cut(s)	50
FaeI	CATG	3 cut(s)	110, 157, 195
FaiI	YATR	4 cut(s)	108, 129, 155, 193
FaqI	GGGAC	1 cut(s)	187
FatI	CATG	3 cut(s)	106, 153, 191
Fnu4HI	GCNGC	2 cut(s)	111, 198
FokI	GGATG	1 cut(s)	182
FriOI	GRGCYC	1 cut(s)	50
Fsp4HI	GCNGC	2 cut(s)	111, 198
GlaI	GCGC	2 cut(s)	11, 196
GluI	GCNGC	2 cut(s)	111, 198
HaeII	RGCGCY	1 cut(s)	13
HhaI	GCGC	2 cut(s)	12, 197
Hin1II	CATG	3 cut(s)	110, 157, 195
Hin6I	GCGC	2 cut(s)	10, 195
HinP1I	GCGC	2 cut(s)	10, 195
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HinfI	GANTC	1 cut(s)	103
HphI	GGTGA	2 cut(s)	34, 176
Hpy166II	GTNNAC	1 cut(s)	136
Hpy8I	GTNNAC	1 cut(s)	136
HpyAV	CCTTC	1 cut(s)	222
HpyCH4III	ACNGT	1 cut(s)	79
HpyCH4V	TGCA	1 cut(s)	113
HpyF3I	CTNAG	2 cut(s)	180, 243
Hsp92II	CATG	3 cut(s)	110, 157, 195
HspAI	GCGC	2 cut(s)	10, 195
Kzo9I	GATC	1 cut(s)	35
LmnI	GCTCC	1 cut(s)	45
LpnPI	CCDG	1 cut(s)	110
Lsp1109I	GCAGC	2 cut(s)	97, 184
MalI	GATC	1 cut(s)	37
MboI	GATC	1 cut(s)	35
MboII	GAAGA	3 cut(s)	16, 54, 112
MhlI	GDGCHC	1 cut(s)	50
MluCI	AATT	4 cut(s)	115, 149, 217, 271
MnlI	CCTC	6 cut(s)	36, 75, 116, 160, 175, 238
NdeII	GATC	1 cut(s)	35
NlaIII	CATG	3 cut(s)	110, 157, 195
NspI	RCATGY	1 cut(s)	195
PfeI	GAWTC	1 cut(s)	103
PflMI	CCANNNNNTGG	1 cut(s)	19
PkrI	GCNGC	2 cut(s)	112, 199
Psp124BI	GAGCTC	1 cut(s)	50
RsaI	GTAC	1 cut(s)	55
RsaNI	GTAC	1 cut(s)	54
SacI	GAGCTC	1 cut(s)	50
SatI	GCNGC	2 cut(s)	111, 198
Sau3AI	GATC	1 cut(s)	35
ScaI	AGTACT	1 cut(s)	55
SduI	GDGCHC	1 cut(s)	50
SetI	ASST	3 cut(s)	50, 86, 249
SmlI	CTYRAG	1 cut(s)	49
SmoI	CTYRAG	1 cut(s)	49
Sse9I	AATT	4 cut(s)	115, 149, 217, 271
SstI	GAGCTC	1 cut(s)	50
TaaI	ACNGT	1 cut(s)	79
TasI	AATT	4 cut(s)	115, 149, 217, 271
TatI	WGTACW	1 cut(s)	53
TfiI	GAWTC	1 cut(s)	103
TseI	GCWGC	2 cut(s)	110, 197
TspDTI	ATGAA	3 cut(s)	17, 48, 142
Van91I	CCANNNNNTGG	1 cut(s)	19
XapI	RAATTY	3 cut(s)	115, 149, 217
XceI	RCATGY	1 cut(s)	195
ZrmI	AGTACT	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.