Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0013948

Physical Location & Seq

Genomic Coordinates Reverse (-)

65756918 .. 65757806

Gene Structure 889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005195

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGAAGAAACAGCAAGTGGTAGTCAGAAGAGATGGGTCGTCCCGGAGGAGCTCAAGCAGTACTTCATCTTCAATGGTTAGAACTGTGAGGTATGGGGAGTGCCAGAAGAATCACGCTGCAAATATCGGAGGGTACGCGGTGGATGGATGCAGAGAATTCATGGCAAGTGGGCAGGAGGGCACGGCGGAGGCGCTGACTTGTGCTGCCTGCGGCTGCCACCGGAATTTTCACCGGAGGGAAGTGGAAACTGAGGCCCACACATCCAATCATGCTATATATCAACAGTTCAGAACATTTGAAAAACTTGTTCAGGCAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009737 GO:0009739 GO:0009741 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043392 GO:0044092 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048509 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051098 GO:0051100 GO:0051101 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:0097159 GO:0097305 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZF-HD_dimer

Protein Analysis

107

Amino Acids

11.76

Weight (kDa)

9.19

Isoelectric Point (pI)

63.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZF-HD_dimer	PF04770	29 - 81	2.3e-31	ZF-HD protein dimerisation region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0013948)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18835 AT1G74660 AT1G74660
malus_domestica	MD06G1193200.v1.1 MD14G1200200.v1.1
prunus_persica	Prupe.5G193300_v2.0.a1
pyrus_communis	pycom14g16590
rosa_chinensis	RchiOBHm_Chr7g0181371
rosa_laevigata	RLG00000005195
rosa_multiflora	Rmu_sc0002060.1_g000011 Rmu_sc0004621.1_g000012
rosa_roxburghii	Rroxscaffold_3G00272070
rosa_rugosa	Rorug06G0440500
rosa_samantha	Rh7AG042700 Rh7BG041900 Rh7DG042500
rosa_wichuraiana	Rw7G003550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	137
AciI	CCGC	3 cut(s)	137, 185, 210
AcsI	RAATTY	2 cut(s)	155, 223
AfaI	GTAC	2 cut(s)	61, 134
AgsI	TTSAA	2 cut(s)	72, 299
AluBI	AGCT	1 cut(s)	51
AluI	AGCT	1 cut(s)	51
Alw21I	GWGCWC	1 cut(s)	53
AoxI	GGCC	1 cut(s)	252
ApeKI	GCWGC	4 cut(s)	116, 203, 213, 314
ApoI	RAATTY	2 cut(s)	155, 223
AspLEI	GCGC	1 cut(s)	193
AspS9I	GGNCC	1 cut(s)	253
AsuC2I	CCSGG	1 cut(s)	43
AsuHPI	GGTGA	1 cut(s)	221
BaeGI	GKGCMC	1 cut(s)	182
BanII	GRGCYC	1 cut(s)	53
BarI	GAAGNNNNNNTAC	2 cut(s)	52, 84
Bbv12I	GWGCWC	1 cut(s)	53
BbvI	GCAGC	3 cut(s)	103, 190, 200
BccI	CCATC	2 cut(s)	26, 137
BceAI	ACGGC	1 cut(s)	198
BcnI	CCSGG	1 cut(s)	43
BfoI	RGCGCY	1 cut(s)	194
BisI	GCNGC	5 cut(s)	117, 204, 211, 214, 315
BlsI	GCNGC	5 cut(s)	118, 205, 212, 215, 316
BmcAI	AGTACT	1 cut(s)	61
Bme1390I	CCNGG	1 cut(s)	43
BmgT120I	GGNCC	1 cut(s)	253
BmrFI	CCNGG	1 cut(s)	43
BmsI	GCATC	1 cut(s)	137
BpuEI	CTTGAG	1 cut(s)	37
BpuMI	CCSGG	1 cut(s)	43
BsaWI	WCCGGW	2 cut(s)	219, 231
BseGI	GGATG	3 cut(s)	148, 152, 260
BseMII	CTCAG	1 cut(s)	240
BseRI	GAGGAG	1 cut(s)	61
BseSI	GKGCMC	1 cut(s)	182
BseXI	GCAGC	3 cut(s)	103, 190, 200
Bsh1236I	CGCG	1 cut(s)	137
BshFI	GGCC	1 cut(s)	254
BsiHKAI	GWGCWC	1 cut(s)	53
BsiSI	CCGG	3 cut(s)	43, 220, 232
BslFI	GGGAC	1 cut(s)	25
BsmFI	GGGAC	1 cut(s)	25
BsnI	GGCC	1 cut(s)	254
Bsp1286I	GDGCHC	2 cut(s)	53, 182
BspACI	CCGC	3 cut(s)	137, 185, 210
BspANI	GGCC	1 cut(s)	254
BspCNI	CTCAG	1 cut(s)	241
BspFNI	CGCG	1 cut(s)	137
Bst4CI	ACNGT	2 cut(s)	85, 285
Bst6I	CTCTTC	1 cut(s)	22
BstC8I	GCNNGC	1 cut(s)	208
BstDEI	CTNAG	1 cut(s)	249
BstF5I	GGATG	3 cut(s)	148, 152, 260
BstFNI	CGCG	1 cut(s)	137
BstH2I	RGCGCY	1 cut(s)	194
BstHHI	GCGC	1 cut(s)	193
BstSCI	CCNGG	1 cut(s)	41
BstSLI	GKGCMC	1 cut(s)	182
BstUI	CGCG	1 cut(s)	137
BstV1I	GCAGC	3 cut(s)	103, 190, 200
BsuRI	GGCC	1 cut(s)	254
BtsCI	GGATG	3 cut(s)	148, 152, 260
Cac8I	GCNNGC	1 cut(s)	208
CfoI	GCGC	1 cut(s)	193
Cfr13I	GGNCC	1 cut(s)	253
Csp6I	GTAC	2 cut(s)	60, 133
CviAII	CATG	2 cut(s)	160, 269
CviJI	RGCY	4 cut(s)	51, 213, 254, 317
CviKI_1	RGCY	4 cut(s)	51, 213, 254, 317
CviQI	GTAC	2 cut(s)	60, 133
DdeI	CTNAG	1 cut(s)	249
Eam1104I	CTCTTC	1 cut(s)	22
EarI	CTCTTC	1 cut(s)	22
EciI	GGCGGA	1 cut(s)	200
Ecl136II	GAGCTC	1 cut(s)	51
Eco24I	GRGCYC	1 cut(s)	53
Eco53kI	GAGCTC	1 cut(s)	51
EcoICRI	GAGCTC	1 cut(s)	51
EcoRI	GAATTC	1 cut(s)	155
EcoT38I	GRGCYC	1 cut(s)	53
FaeI	CATG	2 cut(s)	163, 272
FaiI	YATR	5 cut(s)	93, 161, 270, 275, 277
FalI	AAGNNNNNCTT	2 cut(s)	46, 78
FaqI	GGGAC	1 cut(s)	25
FatI	CATG	2 cut(s)	159, 268
Fnu4HI	GCNGC	5 cut(s)	117, 204, 211, 214, 315
FokI	GGATG	3 cut(s)	155, 159, 247
FriOI	GRGCYC	1 cut(s)	53
Fsp4HI	GCNGC	5 cut(s)	117, 204, 211, 214, 315
GlaI	GCGC	1 cut(s)	192
GluI	GCNGC	5 cut(s)	117, 204, 211, 214, 315
HaeII	RGCGCY	1 cut(s)	194
HaeIII	GGCC	1 cut(s)	254
HapII	CCGG	3 cut(s)	43, 220, 232
HhaI	GCGC	1 cut(s)	193
Hin1II	CATG	2 cut(s)	163, 272
Hin6I	GCGC	1 cut(s)	191
HinP1I	GCGC	1 cut(s)	191
HinfI	GANTC	1 cut(s)	109
HpaII	CCGG	3 cut(s)	43, 220, 232
HphI	GGTGA	1 cut(s)	221
Hpy188I	TCNGA	3 cut(s)	26, 128, 290
HpyCH4III	ACNGT	2 cut(s)	85, 285
HpyCH4V	TGCA	2 cut(s)	119, 150
HpyF3I	CTNAG	1 cut(s)	249
Hsp92II	CATG	2 cut(s)	163, 272
HspAI	GCGC	1 cut(s)	191
LmnI	GCTCC	1 cut(s)	48
LpnPI	CCDG	7 cut(s)	56, 116, 158, 220, 233, 245, 296
Lsp1109I	GCAGC	3 cut(s)	103, 190, 200
LweI	GCATC	1 cut(s)	137
MboII	GAAGA	4 cut(s)	16, 39, 60, 118
MhlI	GDGCHC	2 cut(s)	53, 182
MluCI	AATT	2 cut(s)	155, 223
MnlI	CCTC	7 cut(s)	39, 81, 122, 169, 181, 228, 244
MspI	CCGG	3 cut(s)	43, 220, 232
MspR9I	CCNGG	1 cut(s)	43
MvnI	CGCG	1 cut(s)	137
NciI	CCSGG	1 cut(s)	43
NlaIII	CATG	2 cut(s)	163, 272
PfeI	GAWTC	1 cut(s)	109
PfoI	TCCNGGA	1 cut(s)	41
PkrI	GCNGC	5 cut(s)	118, 205, 212, 215, 316
Psp124BI	GAGCTC	1 cut(s)	53
PspPI	GGNCC	1 cut(s)	253
RsaI	GTAC	2 cut(s)	61, 134
RsaNI	GTAC	2 cut(s)	60, 133
SacI	GAGCTC	1 cut(s)	53
SatI	GCNGC	5 cut(s)	117, 204, 211, 214, 315
Sau96I	GGNCC	1 cut(s)	253
ScaI	AGTACT	1 cut(s)	61
ScrFI	CCNGG	1 cut(s)	43
SduI	GDGCHC	2 cut(s)	53, 182
SetI	ASST	2 cut(s)	53, 92
SfaNI	GCATC	1 cut(s)	137
SmlI	CTYRAG	1 cut(s)	52
SmoI	CTYRAG	1 cut(s)	52
Sse9I	AATT	2 cut(s)	155, 223
SsiI	CCGC	3 cut(s)	137, 185, 210
SstI	GAGCTC	1 cut(s)	53
StyD4I	CCNGG	1 cut(s)	41
TaaI	ACNGT	2 cut(s)	85, 285
TasI	AATT	2 cut(s)	155, 223
TatI	WGTACW	1 cut(s)	59
TauI	GCSGC	1 cut(s)	213
TfiI	GAWTC	1 cut(s)	109
TseI	GCWGC	4 cut(s)	116, 203, 213, 314
TspDTI	ATGAA	3 cut(s)	17, 54, 148
XapI	RAATTY	2 cut(s)	155, 223
ZrmI	AGTACT	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.