Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003561

Physical Location & Seq

Genomic Coordinates Forward (+)

6814704 .. 6816876

Gene Structure 2173 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G19710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1440 bp

ATGGCGAAGCCATCAACGAGTATGTGGGCAACATTGCAGAAGAAGAGATGGCCACTGATGATTCTATTGGTTTTATCTGTATCAACAGTAGGAATGATTCTCGTGAGATCTACTTTTGATTCCTGTAGTGTTAGTGGAAAGAGATGTAGCCGAGAGAAGGAAGATAACAGTGACATTAAGATCCAATCGGTTTCTGGATCGTTGAATCCTCTCGAGTTCATGAAATCAAAGCTCGTTTTACTTGTTTCTCATGAACTCTCGCTCTCAGGTGGACCTTTATTGTTAATGGAATTGGCGTTTTTGCTTAGAGGAGTTGAATCTGAAGTTGTTTGGATCACGAATCAGAAACCAGTTGAAGAAGATGAAGTGATCAAGGTTCTAGAACACAAGATGTTGGATCGAGGAGTCCAGGTGATATCAGCAAAGAGTCAGAAAGCTATAGATACAGCTCTCAAGTCTGATCTGGTTGTTTTAAACACTGCTGTTGCTGGGAAATGGCTTGATGCAGTTCTCAAGGACAATGTTCCTAAAGTTCTTCCTAAAGTACTCTGGTGGATTCATGAGATGAGAGGTCACTATTTCAAACCGGATTTAGTCAAGCACCTTCCGTTTGTTGCAGGTGCTATGATTGATTCGCACGCAACAGCTGAATACTGGAAGAACAGAACTCATGATCGCTTAGGGATTAAAATGCCTAAAACTTATGTCGTGCACCTAGGAAATAGCAAGGAGTTGATGGAAGTAGCTGAAGATAGTTTCGCCAAGAATGTTCTCCGTGAGCAAGTTCGAGAATCTCTTGGAGTGAGGAATGAAGACATACTATTTGGCATTATTAATAGTGTATCTCGAGGAAAGGGCCAAGATCTATTCCTCCGAGCGTTCCATGAAAGTCTTAAAGTAATCAAAGAGACTAAGAAACTTGAGGTACCAACAATGCATGCAGTGGTAGTAGGAAGCGATATGAGCGCACAGACGAAATTTGAGACAGAGCTACGCAACTTTGTCCAAGAGATGAAACTTCAAAAAATTGTCCACTTTGTCAACAAAACAATGAAGGTAGCACCATATTTAGCAGCTATTGACGTTCTTGTCCAAAACTCCCAAGCCAGAGGAGAATGCTTTGGGAGAATAACAATTGAAGCCATGGCCTTTAAGCTTCCTGTACTTGGGACTGCAGCAGGAGGCACAATGGAGATTGTAGTGAACAGAACAACAGGTCTATTGCACAACACTGGTAAAGATGGCGTGTTACCTCTCGCCAAAAACATTGTGAAGCTGGCGACTAACGTGAAGATGAGGAATACAATGGGGAAGAAAGGGTATGAGAGGGTAAAAGAGATGTTCTTGGAACATCATATGTCTCATCGAATAGCTTCTGTGCTCAGAGAAGTGTTGCAACATGCAAAAATTCACTCACGAACAACCAATTCGGATCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_trans_4_5 Glycos_transf_1

Protein Analysis

479

Amino Acids

53.74

Weight (kDa)

9.54

Isoelectric Point (pI)

34.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_trans_4_5	PF16994	75 - 253	9.5e-68	Glycosyl-transferase family 4
Glycos_transf_1	PF00534	260 - 443	3.3e-21	Glycosyl transferases group 1
Glyco_trans_1_4	PF13692	283 - 429	3.5e-16	Glycosyl transferases group 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003561)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19710 AT1G75420 AT1G75420 AT1G75420
fragaria_vesca	FvH4_1g12520 FvH4_2g39300 FvH4_2g39300
malus_domestica	MD02G1139400.v1.1 MD15G1022300.v1.1 MD15G1252500.v1.1
prunus_persica	Prupe.1G374100_v2.0.a1 Prupe.7G161700_v2.0.a1 Prupe.7G161700_v2.0.a1
pyrus_communis	pycom02g11010 pycom15g01860 pycom15g22240
rosa_chinensis	RchiOBHm_Chr2g0100451 RchiOBHm_Chr6g0301701
rosa_laevigata	RLG00000011230 RLG00000016974
rosa_multiflora	Rmu_sc0000528.1_g000027 Rmu_sc0001095.1_g000003 Rmu_sc0034934.1_g000003
rosa_roxburghii	Rroxscaffold_2G00142240 Rroxscaffold_7G00166500
rosa_rugosa	Rorug02G0088200 Rorug06G0308200
rosa_samantha	Rh2AG137900 Rh2BG141100 Rh2DG142700 Rh6AG420700 Rh6BG427400 Rh6DG420900
rosa_wichuraiana	Rw2G010770 Rw6G036410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	608
AasI	GACNNNNNNGTC	1 cut(s)	1088
Acc36I	ACCTGC	1 cut(s)	608
Acc65I	GGTACC	1 cut(s)	925
AccB1I	GGYRCC	1 cut(s)	925
AclWI	GGATC	4 cut(s)	175, 205, 341, 405
AcoI	YGGCCR	1 cut(s)	50
AcsI	RAATTY	2 cut(s)	977, 1407
AcuI	CTGAAG	2 cut(s)	342, 768
AfaI	GTAC	3 cut(s)	546, 927, 1164
AfiI	CCNNNNNNNGG	2 cut(s)	157, 1166
AgsI	TTSAA	6 cut(s)	205, 317, 356, 583, 1022, 1139
AjnI	CCWGG	1 cut(s)	408
Alw21I	GWGCWC	2 cut(s)	714, 1383
Alw26I	GTCTC	3 cut(s)	902, 977, 1365
Alw44I	GTGCAC	1 cut(s)	710
AlwI	GGATC	4 cut(s)	175, 205, 341, 405
Ama87I	CYCGRG	2 cut(s)	212, 846
AoxI	GGCC	3 cut(s)	50, 856, 1146
ApaLI	GTGCAC	1 cut(s)	710
ApeKI	GCWGC	2 cut(s)	1073, 1175
ApoI	RAATTY	2 cut(s)	977, 1407
ArsI	GACNNNNNNTTYG	2 cut(s)	806, 838
AseI	ATTAAT	1 cut(s)	834
Asp700I	GAANNNNTTC	1 cut(s)	1372
Asp718I	GGTACC	1 cut(s)	925
AspA2I	CCTAGG	1 cut(s)	715
AspLEI	GCGC	1 cut(s)	968
AspS9I	GGNCC	2 cut(s)	272, 856
AsuHPI	GGTGA	1 cut(s)	424
AvaI	CYCGRG	2 cut(s)	212, 846
AvaII	GGWCC	1 cut(s)	272
AvrII	CCTAGG	1 cut(s)	715
BaeGI	GKGCMC	1 cut(s)	714
BalI	TGGCCA	1 cut(s)	52
BanI	GGYRCC	1 cut(s)	925
BauI	CACGAG	1 cut(s)	101
BbsI	GAAGAC	1 cut(s)	819
Bbv12I	GWGCWC	2 cut(s)	714, 1383
BbvI	GCAGC	2 cut(s)	1085, 1187
BccI	CCATC	4 cut(s)	19, 42, 730, 1235
BciT130I	CCWGG	1 cut(s)	410
BclI	TGATCA	1 cut(s)	369
BcoDI	GTCTC	3 cut(s)	902, 977, 1365
BfaI	CTAG	2 cut(s)	380, 716
BfmI	CTRYAG	3 cut(s)	124, 438, 1173
BfuAI	ACCTGC	1 cut(s)	608
BglII	AGATCT	2 cut(s)	107, 862
BisI	GCNGC	2 cut(s)	1074, 1176
BlnI	CCTAGG	1 cut(s)	715
BlsI	GCNGC	2 cut(s)	1075, 1177
BmcAI	AGTACT	1 cut(s)	546
Bme1390I	CCNGG	1 cut(s)	410
Bme18I	GGWCC	1 cut(s)	272
BmeT110I	CYCGRG	2 cut(s)	212, 846
BmgT120I	GGNCC	2 cut(s)	272, 856
BmiI	GGNNCC	1 cut(s)	927
BmrFI	CCNGG	1 cut(s)	410
BmsI	GCATC	1 cut(s)	493
BpiI	GAAGAC	1 cut(s)	819
Bpu10I	CCTNAGC	1 cut(s)	679
BpuEI	CTTGAG	3 cut(s)	437, 497, 941
BsaJI	CCNNGG	2 cut(s)	715, 1143
BsaWI	WCCGGW	1 cut(s)	586
BsaXI	ACNNNNNCTCC	2 cut(s)	396, 426
Bsc4I	CCNNNNNNNGG	2 cut(s)	157, 1166
Bse1I	ACTGG	3 cut(s)	350, 659, 1237
Bse3DI	GCAATG	1 cut(s)	32
BseBI	CCWGG	1 cut(s)	410
BseDI	CCNNGG	2 cut(s)	715, 1143
BseLI	CCNNNNNNNGG	2 cut(s)	157, 1166
BseMI	GCAATG	1 cut(s)	32
BseMII	CTCAG	2 cut(s)	279, 1396
BseNI	ACTGG	3 cut(s)	350, 659, 1237
BseRI	GAGGAG	3 cut(s)	324, 417, 1125
BseSI	GKGCMC	1 cut(s)	714
BseXI	GCAGC	2 cut(s)	1085, 1187
BseYI	CCCAGC	1 cut(s)	488
BshFI	GGCC	3 cut(s)	52, 858, 1148
BshNI	GGYRCC	1 cut(s)	925
BsiHKAI	GWGCWC	2 cut(s)	714, 1383
BsiHKCI	CYCGRG	2 cut(s)	212, 846
BsiSI	CCGG	1 cut(s)	587
BslFI	GGGAC	1 cut(s)	1183
BslI	CCNNNNNNNGG	2 cut(s)	157, 1166
BsmAI	GTCTC	3 cut(s)	902, 977, 1365
BsmFI	GGGAC	1 cut(s)	1183
BsmI	GAATGC	1 cut(s)	1121
BsnI	GGCC	3 cut(s)	52, 858, 1148
BsoBI	CYCGRG	2 cut(s)	212, 846
Bsp1286I	GDGCHC	2 cut(s)	714, 1383
Bsp19I	CCATGG	1 cut(s)	1143
BspANI	GGCC	3 cut(s)	52, 858, 1148
BspCNI	CTCAG	2 cut(s)	278, 1395
BspHI	TCATGA	4 cut(s)	219, 250, 559, 670
BspLI	GGNNCC	1 cut(s)	927
BspMAI	CTGCAG	1 cut(s)	1177
BspMI	ACCTGC	1 cut(s)	608
BspPI	GGATC	4 cut(s)	175, 205, 341, 405
BspT107I	GGYRCC	1 cut(s)	925
BsrDI	GCAATG	1 cut(s)	32
BsrI	ACTGG	3 cut(s)	350, 659, 1237
BssECI	CCNNGG	2 cut(s)	715, 1143
BssSI	CACGAG	1 cut(s)	101
BssT1I	CCWWGG	2 cut(s)	715, 1143
Bst2BI	CACGAG	1 cut(s)	101
Bst2UI	CCWGG	1 cut(s)	410
Bst4CI	ACNGT	2 cut(s)	88, 170
Bst6I	CTCTTC	1 cut(s)	38
BstC8I	GCNNGC	3 cut(s)	639, 939, 1278
BstDEI	CTNAG	5 cut(s)	265, 305, 679, 912, 1382
BstDSI	CCRYGG	1 cut(s)	1143
BstHHI	GCGC	1 cut(s)	968
BstMAI	GTCTC	3 cut(s)	902, 977, 1365
BstMWI	GCNNNNNNNGC	1 cut(s)	963
BstNI	CCWGG	1 cut(s)	410
BstNSI	RCATGY	2 cut(s)	941, 1403
BstSCI	CCNGG	1 cut(s)	408
BstSFI	CTRYAG	3 cut(s)	124, 438, 1173
BstSLI	GKGCMC	1 cut(s)	714
BstV1I	GCAGC	2 cut(s)	1085, 1187
BstV2I	GAAGAC	1 cut(s)	819
BstX2I	RGATCY	3 cut(s)	107, 180, 862
BstYI	RGATCY	3 cut(s)	107, 180, 862
BsuRI	GGCC	3 cut(s)	52, 858, 1148
BtgI	CCRYGG	1 cut(s)	1143
BtsI	GCAGTG	2 cut(s)	477, 948
BtsIMutI	CAGTG	5 cut(s)	53, 175, 477, 948, 1230
BveI	ACCTGC	1 cut(s)	608
Cac8I	GCNNGC	3 cut(s)	639, 939, 1278
CciI	TCATGA	4 cut(s)	219, 250, 559, 670
CfoI	GCGC	1 cut(s)	968
Cfr13I	GGNCC	2 cut(s)	272, 856
Csp6I	GTAC	3 cut(s)	545, 926, 1163
CviAII	CATG	8 cut(s)	220, 251, 560, 671, 884, 938, 1144, 1400
CviQI	GTAC	3 cut(s)	545, 926, 1163
DdeI	CTNAG	5 cut(s)	265, 305, 679, 912, 1382
DraI	TTTAAA	1 cut(s)	474
DrdI	GACNNNNNNGTC	1 cut(s)	1088
DseDI	GACNNNNNNGTC	1 cut(s)	1088
EaeI	YGGCCR	1 cut(s)	50
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
Eco130I	CCWWGG	2 cut(s)	715, 1143
Eco32I	GATATC	1 cut(s)	417
Eco47I	GGWCC	1 cut(s)	272
Eco57I	CTGAAG	2 cut(s)	342, 768
Eco88I	CYCGRG	2 cut(s)	212, 846
EcoRII	CCWGG	1 cut(s)	408
EcoRV	GATATC	1 cut(s)	417
EcoT14I	CCWWGG	2 cut(s)	715, 1143
EcoT22I	ATGCAT	1 cut(s)	939
ErhI	CCWWGG	2 cut(s)	715, 1143
FaeI	CATG	8 cut(s)	223, 254, 563, 674, 887, 941, 1147, 1403
FaqI	GGGAC	1 cut(s)	1183
FatI	CATG	8 cut(s)	219, 250, 559, 670, 883, 937, 1143, 1399
FauNDI	CATATG	1 cut(s)	1356
FbaI	TGATCA	1 cut(s)	369
Fnu4HI	GCNGC	2 cut(s)	1074, 1176
Fsp4HI	GCNGC	2 cut(s)	1074, 1176
FspBI	CTAG	2 cut(s)	380, 716
GlaI	GCGC	1 cut(s)	967
GluI	GCNGC	2 cut(s)	1074, 1176
GsaI	CCCAGC	1 cut(s)	492
HaeIII	GGCC	3 cut(s)	52, 858, 1148
HapII	CCGG	1 cut(s)	587
HhaI	GCGC	1 cut(s)	968
Hin1II	CATG	8 cut(s)	223, 254, 563, 674, 887, 941, 1147, 1403
Hin6I	GCGC	1 cut(s)	966
HinP1I	GCGC	1 cut(s)	966
HincII	GTYRAC	1 cut(s)	1042
HindII	GTYRAC	1 cut(s)	1042
HindIII	AAGCTT	1 cut(s)	1154
HpaII	CCGG	1 cut(s)	587
HphI	GGTGA	1 cut(s)	424
Hpy166II	GTNNAC	5 cut(s)	272, 712, 1033, 1042, 1204
Hpy188I	TCNGA	7 cut(s)	322, 345, 432, 460, 875, 1385, 1432
Hpy8I	GTNNAC	5 cut(s)	272, 712, 1033, 1042, 1204
HpyAV	CCTTC	3 cut(s)	151, 614, 1048
HpyCH4III	ACNGT	2 cut(s)	88, 170
HpyCH4IV	ACGT	2 cut(s)	1083, 1287
HpyF10VI	GCNNNNNNNGC	1 cut(s)	963
HpyF3I	CTNAG	5 cut(s)	265, 305, 679, 912, 1382
HpySE526I	ACGT	2 cut(s)	1083, 1287
Hsp92II	CATG	8 cut(s)	223, 254, 563, 674, 887, 941, 1147, 1403
HspAI	GCGC	1 cut(s)	966
KpnI	GGTACC	1 cut(s)	929
Ksp22I	TGATCA	1 cut(s)	369
Lsp1109I	GCAGC	2 cut(s)	1085, 1187
LweI	GCATC	1 cut(s)	493
MaeI	CTAG	2 cut(s)	380, 716
MaeII	ACGT	2 cut(s)	1083, 1287
MaeIII	GTNAC	3 cut(s)	170, 572, 1248
MfeI	CAATTG	1 cut(s)	1134
MflI	RGATCY	3 cut(s)	107, 180, 862
MhlI	GDGCHC	2 cut(s)	714, 1383
MlsI	TGGCCA	1 cut(s)	52
MluCI	AATT	6 cut(s)	290, 977, 1026, 1134, 1407, 1426
MluNI	TGGCCA	1 cut(s)	52
MlyI	GAGTC	2 cut(s)	414, 436
MmeI	TCCRAC	1 cut(s)	375
Mox20I	TGGCCA	1 cut(s)	52
Mph1103I	ATGCAT	1 cut(s)	939
MroXI	GAANNNNTTC	1 cut(s)	1372
MscI	TGGCCA	1 cut(s)	52
MseI	TTAA	8 cut(s)	177, 284, 473, 687, 834, 894, 1152, 1438
Msp20I	TGGCCA	1 cut(s)	52
MspA1I	CMGCKG	1 cut(s)	647
MspI	CCGG	1 cut(s)	587
MspR9I	CCNGG	1 cut(s)	410
MunI	CAATTG	1 cut(s)	1134
Mva1269I	GAATGC	1 cut(s)	1121
MvaI	CCWGG	1 cut(s)	410
MwoI	GCNNNNNNNGC	1 cut(s)	963
NcoI	CCATGG	1 cut(s)	1143
NdeI	CATATG	1 cut(s)	1356
NlaIII	CATG	8 cut(s)	223, 254, 563, 674, 887, 941, 1147, 1403
NlaIV	GGNNCC	1 cut(s)	927
NmeAIII	GCCGAG	1 cut(s)	176
NmuCI	GTSAC	2 cut(s)	170, 572
NsiI	ATGCAT	1 cut(s)	939
NspI	RCATGY	2 cut(s)	941, 1403
PaeI	GCATGC	1 cut(s)	941
PaeR7I	CTCGAG	2 cut(s)	212, 846
PagI	TCATGA	4 cut(s)	219, 250, 559, 670
PaqCI	CACCTGC	1 cut(s)	608
PctI	GAATGC	1 cut(s)	1121
PdmI	GAANNNNTTC	1 cut(s)	1372
PfeI	GAWTC	9 cut(s)	61, 97, 119, 205, 317, 340, 556, 632, 791
PkrI	GCNGC	2 cut(s)	1075, 1177
PleI	GAGTC	2 cut(s)	413, 435
PpsI	GAGTC	2 cut(s)	413, 435
PshBI	ATTAAT	1 cut(s)	834
Psp6I	CCWGG	1 cut(s)	408
PspFI	CCCAGC	1 cut(s)	488
PspGI	CCWGG	1 cut(s)	408
PspN4I	GGNNCC	1 cut(s)	927
PspPI	GGNCC	2 cut(s)	272, 856
PstI	CTGCAG	1 cut(s)	1177
PsuI	RGATCY	3 cut(s)	107, 180, 862
PvuII	CAGCTG	1 cut(s)	647
RsaI	GTAC	3 cut(s)	546, 927, 1164
RsaNI	GTAC	3 cut(s)	545, 926, 1163
SaqAI	TTAA	8 cut(s)	177, 284, 473, 687, 834, 894, 1152, 1438
SatI	GCNGC	2 cut(s)	1074, 1176
Sau96I	GGNCC	2 cut(s)	272, 856
ScaI	AGTACT	1 cut(s)	546
SchI	GAGTC	2 cut(s)	414, 436
ScrFI	CCNGG	1 cut(s)	410
SduI	GDGCHC	2 cut(s)	714, 1383
SfaNI	GCATC	1 cut(s)	493
SfcI	CTRYAG	3 cut(s)	124, 438, 1173
Sfr274I	CTCGAG	2 cut(s)	212, 846
SinI	GGWCC	1 cut(s)	272
SlaI	CTCGAG	2 cut(s)	212, 846
SmlI	CTYRAG	5 cut(s)	212, 452, 512, 846, 920
SmoI	CTYRAG	5 cut(s)	212, 452, 512, 846, 920
SphI	GCATGC	1 cut(s)	941
Sse9I	AATT	6 cut(s)	290, 977, 1026, 1134, 1407, 1426
SspMI	CTAG	2 cut(s)	380, 716
StyD4I	CCNGG	1 cut(s)	408
StyI	CCWWGG	2 cut(s)	715, 1143
TaaI	ACNGT	2 cut(s)	88, 170
TaiI	ACGT	2 cut(s)	1086, 1290
TaqI	TCGA	5 cut(s)	213, 400, 787, 847, 1366
TasI	AATT	6 cut(s)	290, 977, 1026, 1134, 1407, 1426
TatI	WGTACW	2 cut(s)	544, 1162
TfiI	GAWTC	9 cut(s)	61, 97, 119, 205, 317, 340, 556, 632, 791
Tru1I	TTAA	8 cut(s)	177, 284, 473, 687, 834, 894, 1152, 1438
Tru9I	TTAA	8 cut(s)	177, 284, 473, 687, 834, 894, 1152, 1438
TscAI	CASTG	5 cut(s)	60, 175, 484, 948, 1237
TseFI	GTSAC	2 cut(s)	170, 572
TseI	GCWGC	2 cut(s)	1073, 1175
Tsp45I	GTSAC	2 cut(s)	170, 572
TspDTI	ATGAA	9 cut(s)	208, 236, 267, 378, 548, 825, 900, 1028, 1067
TspGWI	ACGGA	2 cut(s)	597, 764
TspRI	CASTG	5 cut(s)	60, 175, 484, 948, 1237
VneI	GTGCAC	1 cut(s)	710
VpaK11BI	GGWCC	1 cut(s)	272
VspI	ATTAAT	1 cut(s)	834
XapI	RAATTY	2 cut(s)	977, 1407
XbaI	TCTAGA	1 cut(s)	379
XceI	RCATGY	2 cut(s)	941, 1403
XcmI	CCANNNNNNNNNTGG	1 cut(s)	191
XhoI	CTCGAG	2 cut(s)	212, 846
XmaJI	CCTAGG	1 cut(s)	715
XmnI	GAANNNNTTC	1 cut(s)	1372
XspI	CTAG	2 cut(s)	380, 716
ZrmI	AGTACT	1 cut(s)	546
Zsp2I	ATGCAT	1 cut(s)	939

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.