Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003561

Physical Location & Seq

Genomic Coordinates Forward (+)

28305218 .. 28307548

Gene Structure 2331 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G75420.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1392 bp

ATGGTCAAAGCGTCGACGATGCAAAGGAAGAGATGGGCACTGATGGTTTTGTTGTTTCTATCTGTATCAACAGTGTGTATGATTCTCGTGAGATCTAGCTTTGAAACCTGTAGCATTAGTAGCCAATTCGTGGAAGAAAAGAATGGAGAAAGCAGCGCCGCGAAGTTTCAATCGAATCCTCTAGATTTCATGAAATCGAAGCTCGTTTTGTTAGTATCCCACGAGCTATCACTCTCAGGTGGACCTTTGCTATTGATGGAATTGGCGTTTTTGTTAAGAGGAGTTGGTGCTGACGTTGTTTGGATCACTAATCAAAAGCCACTTGAAGATGATGAAGTTGTCTATAGTCTTGAACACAAGATGTTGGATCGAGGAGTTCAGGTTATCTCTGCAAAGGGTCAGAAAGCTGTAGATACATCTCTCAAGGCTGATTTGATTGTTCTTAATACTGCTGTGGCTGGGAAATGGCTTGATGCTGTTCTAAAAGAAAATGTTGTTAAAGTTCTACCTAAGATCCTATGGTGGATTCATGAGATGAGAGGACACTATTTCAATGCTGATTTGGTCAAACACCTCCCCTTTGTTGCAGGGGCCATGATTGATTCGCATGCAACAGCTGGATACTGGAAAAACAGAACACAAGCTCGCCTAGGGATTAAAATGCCCAAAACTTACGTTGTGCACCTAGGAAATAGCAAGGAATTGATGGAAGTAGCTGAAGATAGTGTTGCCAAGAGAGTTCTCCGTGAGCACGTCCGAGAATCTCTTGGAGTGCGGAATGAAGACTTACTCTTTGGCATTATTAATAGTGTATCGCGTGGAAAAGGCCAGGATCTGTTCCTCCGAGCCTTCCACGAAAGTCTTGAAAGAATCAAAGAGAAGAAACTTCAGGTACCAACAATGCATGCAGTAGTAGTAGGAAGCGACATGAGCAAGCAGACAAAGTTCGAGACAGAGCTACGCAACTTTGTCCGAGAAAAGAAACTTGAGAACTTTGTCCACTTCGTCAACAAAACTCTAACCGTAGCACCATATATAGCAGCCATAGACGTTCTTGTCCAAAACTCCCAAGCCAGAGGAGAATGCTTTGGGAGAATAACAATCGAAGCCATGGCCTTTAAGCTACCTGTACTTGGTACTGCAGCCGGAGGAACAATGGAGATTGTAGTGAATGGAACGACTGGTCTGTTACATAGTGCAGGGAAAGAAGGAGTGATACCTCTCGCCAAGAACATAGTGAAGTTGGCGACGCAAGTTGAGTTACGGCTGAGAATGGGAAAAAATGGGTATGAGAGAGTAAAAGAGATGTTTTTGGAACATCATATGTCACATCGAATAGCTTCGGTACTCAAAGAAGTCTTGCAACACGCAAAGGCTCGTGCTTTACGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_trans_4_5 Glycos_transf_1

Protein Analysis

463

Amino Acids

51.76

Weight (kDa)

9.55

Isoelectric Point (pI)

29.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_trans_4_5	PF16994	1 - 159	1e-57	Glycosyl-transferase family 4
Glycos_transf_1	PF00534	165 - 347	1.3e-21	Glycosyl transferases group 1
Glyco_trans_1_4	PF13692	188 - 331	5.6e-17	Glycosyl transferases group 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003561)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19710 AT1G75420 AT1G75420 AT1G75420
fragaria_vesca	FvH4_1g12520 FvH4_2g39300 FvH4_2g39300
malus_domestica	MD02G1139400.v1.1 MD15G1022300.v1.1 MD15G1252500.v1.1
prunus_persica	Prupe.1G374100_v2.0.a1 Prupe.7G161700_v2.0.a1 Prupe.7G161700_v2.0.a1
pyrus_communis	pycom02g11010 pycom15g01860 pycom15g22240
rosa_chinensis	RchiOBHm_Chr2g0100451 RchiOBHm_Chr6g0301701
rosa_laevigata	RLG00000011230 RLG00000016974
rosa_multiflora	Rmu_sc0000528.1_g000027 Rmu_sc0001095.1_g000003 Rmu_sc0034934.1_g000003
rosa_roxburghii	Rroxscaffold_2G00142240 Rroxscaffold_7G00166500
rosa_rugosa	Rorug02G0088200 Rorug06G0308200
rosa_samantha	Rh2AG137900 Rh2BG141100 Rh2DG142700 Rh6AG420700 Rh6BG427400 Rh6DG420900
rosa_wichuraiana	Rw2G010770 Rw6G036410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1055
Acc65I	GGTACC	1 cut(s)	892
AccB1I	GGYRCC	1 cut(s)	892
AccB7I	CCANNNNNTGG	1 cut(s)	130
AccI	GTMKAC	1 cut(s)	14
AccII	CGCG	2 cut(s)	161, 817
AciI	CCGC	2 cut(s)	159, 775
AclWI	GGATC	4 cut(s)	311, 375, 508, 840
AcuI	CTGAAG	2 cut(s)	738, 872
AfaI	GTAC	4 cut(s)	894, 1131, 1138, 1347
AfiI	CCNNNNNNNGG	2 cut(s)	130, 1133
AgsI	TTSAA	6 cut(s)	104, 170, 326, 353, 553, 866
AjiI	CACGTC	1 cut(s)	754
AjnI	CCWGG	1 cut(s)	828
Alw21I	GWGCWC	2 cut(s)	684, 753
Alw26I	GTCTC	1 cut(s)	944
Alw44I	GTGCAC	1 cut(s)	680
AlwI	GGATC	4 cut(s)	311, 375, 508, 840
AlwNI	CAGNNNCTG	1 cut(s)	835
AoxI	GGCC	3 cut(s)	591, 826, 1113
ApaLI	GTGCAC	1 cut(s)	680
ApeKI	GCWGC	3 cut(s)	153, 1040, 1142
ArsI	GACNNNNNNTTYG	2 cut(s)	776, 808
AseI	ATTAAT	1 cut(s)	804
Asp700I	GAANNNNTTC	1 cut(s)	1339
Asp718I	GGTACC	1 cut(s)	892
AspA2I	CCTAGG	2 cut(s)	649, 685
AspLEI	GCGC	1 cut(s)	158
AspS9I	GGNCC	2 cut(s)	242, 591
AvaII	GGWCC	1 cut(s)	242
AvrII	CCTAGG	2 cut(s)	649, 685
BaeGI	GKGCMC	2 cut(s)	40, 684
BanI	GGYRCC	1 cut(s)	892
BarI	GAAGNNNNNNTAC	2 cut(s)	1200, 1232
BauI	CACGAG	3 cut(s)	86, 221, 1377
BbsI	GAAGAC	1 cut(s)	789
Bbv12I	GWGCWC	2 cut(s)	684, 753
BbvI	GCAGC	3 cut(s)	165, 1052, 1154
BccI	CCATC	4 cut(s)	27, 37, 250, 700
BceAI	ACGGC	1 cut(s)	1280
BciT130I	CCWGG	1 cut(s)	830
BciVI	GTATCC	2 cut(s)	226, 614
BcoDI	GTCTC	1 cut(s)	944
BfaI	CTAG	4 cut(s)	96, 182, 650, 686
BfmI	CTRYAG	4 cut(s)	109, 343, 408, 1140
BfoI	RGCGCY	1 cut(s)	159
BfuI	GTATCC	2 cut(s)	226, 614
BglII	AGATCT	1 cut(s)	92
BisI	GCNGC	4 cut(s)	154, 159, 1041, 1143
BlnI	CCTAGG	2 cut(s)	649, 685
BlsI	GCNGC	4 cut(s)	155, 160, 1042, 1144
Bme1390I	CCNGG	1 cut(s)	830
Bme18I	GGWCC	1 cut(s)	242
BmgBI	CACGTC	1 cut(s)	754
BmgT120I	GGNCC	2 cut(s)	242, 591
BmiI	GGNNCC	2 cut(s)	592, 894
BmrFI	CCNGG	1 cut(s)	830
BmsI	GCATC	2 cut(s)	9, 463
BpiI	GAAGAC	1 cut(s)	789
BpuEI	CTTGAG	2 cut(s)	407, 1007
BsaJI	CCNNGG	3 cut(s)	649, 685, 1110
BsaXI	ACNNNNNCTCC	2 cut(s)	366, 396
Bsc4I	CCNNNNNNNGG	2 cut(s)	130, 1133
Bse1I	ACTGG	2 cut(s)	629, 1186
BseBI	CCWGG	1 cut(s)	830
BseDI	CCNNGG	3 cut(s)	649, 685, 1110
BseLI	CCNNNNNNNGG	2 cut(s)	130, 1133
BseMII	CTCAG	2 cut(s)	249, 1259
BseNI	ACTGG	2 cut(s)	629, 1186
BseRI	GAGGAG	3 cut(s)	294, 387, 1092
BseSI	GKGCMC	2 cut(s)	40, 684
BseXI	GCAGC	3 cut(s)	165, 1052, 1154
BseYI	CCCAGC	1 cut(s)	458
BsgI	GTGCAG	1 cut(s)	1218
Bsh1236I	CGCG	2 cut(s)	161, 817
BshFI	GGCC	3 cut(s)	593, 828, 1115
BshNI	GGYRCC	1 cut(s)	892
BsiHKAI	GWGCWC	2 cut(s)	684, 753
BsiSI	CCGG	1 cut(s)	1146
BslI	CCNNNNNNNGG	2 cut(s)	130, 1133
BsmAI	GTCTC	1 cut(s)	944
BsmI	GAATGC	1 cut(s)	1088
BsnI	GGCC	3 cut(s)	593, 828, 1115
Bsp1286I	GDGCHC	3 cut(s)	40, 684, 753
Bsp143I	GATC	5 cut(s)	92, 303, 367, 513, 832
Bsp19I	CCATGG	1 cut(s)	1110
BspACI	CCGC	2 cut(s)	159, 775
BspANI	GGCC	3 cut(s)	593, 828, 1115
BspCNI	CTCAG	2 cut(s)	248, 1260
BspFNI	CGCG	2 cut(s)	161, 817
BspHI	TCATGA	2 cut(s)	189, 529
BspLI	GGNNCC	2 cut(s)	592, 894
BspMAI	CTGCAG	1 cut(s)	1144
BspPI	GGATC	4 cut(s)	311, 375, 508, 840
BspT107I	GGYRCC	1 cut(s)	892
BsrI	ACTGG	2 cut(s)	629, 1186
BssECI	CCNNGG	3 cut(s)	649, 685, 1110
BssMI	GATC	5 cut(s)	92, 303, 367, 513, 832
BssSI	CACGAG	3 cut(s)	86, 221, 1377
BssT1I	CCWWGG	3 cut(s)	649, 685, 1110
Bst2BI	CACGAG	3 cut(s)	86, 221, 1377
Bst2UI	CCWGG	1 cut(s)	830
Bst4CI	ACNGT	2 cut(s)	73, 1024
Bst6I	CTCTTC	1 cut(s)	23
BstC8I	GCNNGC	4 cut(s)	609, 646, 906, 935
BstDEI	CTNAG	3 cut(s)	235, 510, 1268
BstDSI	CCRYGG	1 cut(s)	1110
BstFNI	CGCG	2 cut(s)	161, 817
BstH2I	RGCGCY	1 cut(s)	159
BstHHI	GCGC	1 cut(s)	158
BstKTI	GATC	5 cut(s)	95, 306, 370, 516, 835
BstMAI	GTCTC	1 cut(s)	944
BstMBI	GATC	5 cut(s)	92, 303, 367, 513, 832
BstMWI	GCNNNNNNNGC	2 cut(s)	120, 930
BstNI	CCWGG	1 cut(s)	830
BstNSI	RCATGY	2 cut(s)	611, 908
BstSCI	CCNGG	1 cut(s)	828
BstSFI	CTRYAG	4 cut(s)	109, 343, 408, 1140
BstSLI	GKGCMC	2 cut(s)	40, 684
BstUI	CGCG	2 cut(s)	161, 817
BstV1I	GCAGC	3 cut(s)	165, 1052, 1154
BstV2I	GAAGAC	1 cut(s)	789
BstX2I	RGATCY	3 cut(s)	92, 513, 832
BstYI	RGATCY	3 cut(s)	92, 513, 832
BsuI	GTATCC	2 cut(s)	226, 614
BsuRI	GGCC	3 cut(s)	593, 828, 1115
BtgI	CCRYGG	1 cut(s)	1110
BtrI	CACGTC	1 cut(s)	754
BtsIMutI	CAGTG	2 cut(s)	38, 78
Cac8I	GCNNGC	4 cut(s)	609, 646, 906, 935
CaiI	CAGNNNCTG	1 cut(s)	835
CciI	TCATGA	2 cut(s)	189, 529
CfoI	GCGC	1 cut(s)	158
Cfr13I	GGNCC	2 cut(s)	242, 591
CseI	GACGC	1 cut(s)	1258
Csp6I	GTAC	4 cut(s)	893, 1130, 1137, 1346
CviAII	CATG	7 cut(s)	190, 530, 595, 608, 905, 928, 1111
CviQI	GTAC	4 cut(s)	893, 1130, 1137, 1346
DdeI	CTNAG	3 cut(s)	235, 510, 1268
DpnI	GATC	5 cut(s)	94, 305, 369, 515, 834
DpnII	GATC	5 cut(s)	92, 303, 367, 513, 832
DrdI	GACNNNNNNGTC	1 cut(s)	1055
DseDI	GACNNNNNNGTC	1 cut(s)	1055
Eam1104I	CTCTTC	1 cut(s)	23
EarI	CTCTTC	1 cut(s)	23
Eco130I	CCWWGG	3 cut(s)	649, 685, 1110
Eco47I	GGWCC	1 cut(s)	242
Eco57I	CTGAAG	2 cut(s)	738, 872
EcoRII	CCWGG	1 cut(s)	828
EcoT14I	CCWWGG	3 cut(s)	649, 685, 1110
EcoT22I	ATGCAT	1 cut(s)	906
ErhI	CCWWGG	3 cut(s)	649, 685, 1110
FaeI	CATG	7 cut(s)	193, 533, 598, 611, 908, 931, 1114
FatI	CATG	7 cut(s)	189, 529, 594, 607, 904, 927, 1110
FauNDI	CATATG	1 cut(s)	1323
FblI	GTMKAC	1 cut(s)	14
Fnu4HI	GCNGC	4 cut(s)	154, 159, 1041, 1143
Fsp4HI	GCNGC	4 cut(s)	154, 159, 1041, 1143
FspBI	CTAG	4 cut(s)	96, 182, 650, 686
GlaI	GCGC	1 cut(s)	157
GluI	GCNGC	4 cut(s)	154, 159, 1041, 1143
GsaI	CCCAGC	1 cut(s)	462
HaeII	RGCGCY	1 cut(s)	159
HaeIII	GGCC	3 cut(s)	593, 828, 1115
HapII	CCGG	1 cut(s)	1146
HgaI	GACGC	1 cut(s)	1258
HhaI	GCGC	1 cut(s)	158
Hin1II	CATG	7 cut(s)	193, 533, 598, 611, 908, 931, 1114
Hin6I	GCGC	1 cut(s)	156
HinP1I	GCGC	1 cut(s)	156
HincII	GTYRAC	2 cut(s)	15, 1009
HindII	GTYRAC	2 cut(s)	15, 1009
HinfI	GANTC	6 cut(s)	82, 175, 526, 602, 761, 870
HpaII	CCGG	1 cut(s)	1146
Hpy166II	GTNNAC	5 cut(s)	15, 242, 682, 1000, 1009
Hpy188I	TCNGA	4 cut(s)	402, 758, 845, 974
Hpy188III	TCNNGA	7 cut(s)	88, 182, 190, 350, 530, 863, 949
Hpy8I	GTNNAC	5 cut(s)	15, 242, 682, 1000, 1009
Hpy99I	CGWCG	3 cut(s)	16, 19, 1252
HpyAV	CCTTC	2 cut(s)	859, 1202
HpyCH4III	ACNGT	2 cut(s)	73, 1024
HpyCH4IV	ACGT	4 cut(s)	294, 675, 753, 1050
HpyF10VI	GCNNNNNNNGC	2 cut(s)	120, 930
HpyF3I	CTNAG	3 cut(s)	235, 510, 1268
HpySE526I	ACGT	4 cut(s)	294, 675, 753, 1050
Hsp92II	CATG	7 cut(s)	193, 533, 598, 611, 908, 931, 1114
HspAI	GCGC	1 cut(s)	156
KpnI	GGTACC	1 cut(s)	896
Kzo9I	GATC	5 cut(s)	92, 303, 367, 513, 832
Lsp1109I	GCAGC	3 cut(s)	165, 1052, 1154
LweI	GCATC	2 cut(s)	9, 463
MaeI	CTAG	4 cut(s)	96, 182, 650, 686
MaeII	ACGT	4 cut(s)	294, 675, 753, 1050
MaeIII	GTNAC	3 cut(s)	1188, 1260, 1326
MalI	GATC	5 cut(s)	94, 305, 369, 515, 834
MboI	GATC	5 cut(s)	92, 303, 367, 513, 832
MboII	GAAGA	6 cut(s)	40, 146, 338, 731, 794, 892
MflI	RGATCY	3 cut(s)	92, 513, 832
MhlI	GDGCHC	3 cut(s)	40, 684, 753
MluCI	AATT	3 cut(s)	125, 260, 701
MmeI	TCCRAC	1 cut(s)	345
MnlI	CCTC	9 cut(s)	189, 272, 365, 533, 584, 851, 1070, 1142, 1230
Mph1103I	ATGCAT	1 cut(s)	906
MroXI	GAANNNNTTC	1 cut(s)	1339
MseI	TTAA	6 cut(s)	275, 444, 498, 657, 804, 1119
MspA1I	CMGCKG	1 cut(s)	617
MspI	CCGG	1 cut(s)	1146
MspR9I	CCNGG	1 cut(s)	830
Mva1269I	GAATGC	1 cut(s)	1088
MvaI	CCWGG	1 cut(s)	830
MvnI	CGCG	2 cut(s)	161, 817
MwoI	GCNNNNNNNGC	2 cut(s)	120, 930
NcoI	CCATGG	1 cut(s)	1110
NdeI	CATATG	1 cut(s)	1323
NdeII	GATC	5 cut(s)	92, 303, 367, 513, 832
NlaIII	CATG	7 cut(s)	193, 533, 598, 611, 908, 931, 1114
NlaIV	GGNNCC	2 cut(s)	592, 894
NmuCI	GTSAC	1 cut(s)	1326
NsiI	ATGCAT	1 cut(s)	906
NspI	RCATGY	2 cut(s)	611, 908
PaeI	GCATGC	2 cut(s)	611, 908
PagI	TCATGA	2 cut(s)	189, 529
PcsI	WCGNNNNNNNCGW	1 cut(s)	1384
PctI	GAATGC	1 cut(s)	1088
PdmI	GAANNNNTTC	1 cut(s)	1339
PfeI	GAWTC	6 cut(s)	82, 175, 526, 602, 761, 870
PflMI	CCANNNNNTGG	1 cut(s)	130
PkrI	GCNGC	4 cut(s)	155, 160, 1042, 1144
PshBI	ATTAAT	1 cut(s)	804
Psp6I	CCWGG	1 cut(s)	828
PspFI	CCCAGC	1 cut(s)	458
PspGI	CCWGG	1 cut(s)	828
PspN4I	GGNNCC	2 cut(s)	592, 894
PspPI	GGNCC	2 cut(s)	242, 591
PstI	CTGCAG	1 cut(s)	1144
PstNI	CAGNNNCTG	1 cut(s)	835
PsuI	RGATCY	3 cut(s)	92, 513, 832
PvuII	CAGCTG	1 cut(s)	617
RsaI	GTAC	4 cut(s)	894, 1131, 1138, 1347
RsaNI	GTAC	4 cut(s)	893, 1130, 1137, 1346
SalI	GTCGAC	1 cut(s)	13
SaqAI	TTAA	6 cut(s)	275, 444, 498, 657, 804, 1119
SatI	GCNGC	4 cut(s)	154, 159, 1041, 1143
Sau3AI	GATC	5 cut(s)	92, 303, 367, 513, 832
Sau96I	GGNCC	2 cut(s)	242, 591
ScrFI	CCNGG	1 cut(s)	830
SduI	GDGCHC	3 cut(s)	40, 684, 753
SfaNI	GCATC	2 cut(s)	9, 463
SfcI	CTRYAG	4 cut(s)	109, 343, 408, 1140
SgrDI	CGTCGACG	1 cut(s)	13
SinI	GGWCC	1 cut(s)	242
SmlI	CTYRAG	2 cut(s)	422, 986
SmoI	CTYRAG	2 cut(s)	422, 986
SphI	GCATGC	2 cut(s)	611, 908
Sse9I	AATT	3 cut(s)	125, 260, 701
SsiI	CCGC	2 cut(s)	159, 775
SspMI	CTAG	4 cut(s)	96, 182, 650, 686
StyD4I	CCNGG	1 cut(s)	828
StyI	CCWWGG	3 cut(s)	649, 685, 1110
TaaI	ACNGT	2 cut(s)	73, 1024
TaiI	ACGT	4 cut(s)	297, 678, 756, 1053
TaqI	TCGA	7 cut(s)	14, 173, 197, 370, 948, 1104, 1333
TasI	AATT	3 cut(s)	125, 260, 701
TatI	WGTACW	1 cut(s)	1129
TauI	GCSGC	1 cut(s)	161
TfiI	GAWTC	6 cut(s)	82, 175, 526, 602, 761, 870
Tru1I	TTAA	6 cut(s)	275, 444, 498, 657, 804, 1119
Tru9I	TTAA	6 cut(s)	275, 444, 498, 657, 804, 1119
TscAI	CASTG	2 cut(s)	45, 78
TseFI	GTSAC	1 cut(s)	1326
TseI	GCWGC	3 cut(s)	153, 1040, 1142
Tsp45I	GTSAC	1 cut(s)	1326
TspDTI	ATGAA	5 cut(s)	178, 206, 348, 518, 795
TspGWI	ACGGA	1 cut(s)	734
TspRI	CASTG	2 cut(s)	45, 78
Van91I	CCANNNNNTGG	1 cut(s)	130
VneI	GTGCAC	1 cut(s)	680
VpaK11BI	GGWCC	1 cut(s)	242
VspI	ATTAAT	1 cut(s)	804
XbaI	TCTAGA	1 cut(s)	181
XceI	RCATGY	2 cut(s)	611, 908
XmaJI	CCTAGG	2 cut(s)	649, 685
XmiI	GTMKAC	1 cut(s)	14
XmnI	GAANNNNTTC	1 cut(s)	1339
XspI	CTAG	4 cut(s)	96, 182, 650, 686
Zsp2I	ATGCAT	1 cut(s)	906

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.