Rh2BG141100

Glycosyl-transferase family 4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0003561
Physical Location & Seq
Forward (+)
12114772 .. 12118447
3676 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG141100.1

Sequence Viewer

Length: 1164 bp
ATGGCGAAGCAGCAGCACTCGGCGGGGTGGGTGGCGTCCCAGAAGCGGTGGCTGTTGGCTTTTCTGGTCATGCTCTCCGTCTCGACCTTGATCGCCTTCTTCATCAGAGCGGCGTTCGATTCCTGCGATCGGAACCTCGACGTCGTCGGAAAGAGGGTGCCTTTGGGCTCGCCGATTGGCACCAGTCCTAGCCCGTTGCGCTTCATGAAGTCCAAACTCGTTCTCCTAGTCTCGCACGAGCTTTCTCTCTCTGGTGGGCCTTTGCTGTTGATGGAGCTAGCTTTTTTGTTAAGAAGTGTTGGTACAGAAGTTTGTTGGGTGACCATTCAGAGGCCGGTGCATACTGACGAAGTGACTTACAGCTTGGAGAATAAGATGTTGGACCGGGGAGTGCAGGTCTTGTCGGAAAAGGGCCAAGAAGCTACAAATATAGCTCTCAAGGCTGATTTAATTGTCTTGAACACGGCAGTTGCTGGGAAATGGATGGAATTGGATGCCACTCTCAAGGAAAATGTTCCCCATCTTCTCCCAAAAGTGTTGTGGTGGATCCATGAAATGCGTGGTCATTACTTTAAGTTGGATTATGTCAAGCACCTCCCCGCTGTTGCAGGTTCTATGATTGATTCACACGTAACAGCAGAATATTGGAAGAATAGAACTCGAGAACGTTTGGGGATCAAAATGCCTGAGACCTTTGTTGTTCACCTTGGGAACAGCAAAGAGCTTATGGAAGTTGCTGAAGACACTGTAGCCAAAAGGGTTTTGCGTGAGCATGTTAGGGAGTCTCTTGGAGTACGAAGTGAAGATCTACTATTTGCCATCATAAACAGTGTTTCACGTGGAAAAGGCCAAGATCTATTTCTGCGTTCATTCTATGAAAGCTTGCGATTGGTCCAAGAGAAGAAGCTGCAACTGCCAAAGATGCATGCAATTGTTGTGGGAAGTGACATGACTTCTCACACCAAGTTTGAGTCTGAATTACGTAACTTTGTAAAGATGAAGAAAATTCAGGATCGCGTTCATTTCGTGAACAAAACGCTGACTGTAGCTCCATATCTAGCTGCCATTGATGTCCTTGTGCAAAATTCTCAGGTATGGCATATTATTCGTTTATTATTGAGTTCATATTTTGTTTTCAAGAACTGCATCTGCATGTACATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_trans_4_5 Glycos_transf_1

Protein Analysis

387

Amino Acids

44.07

Weight (kDa)

9.4

Isoelectric Point (pI)

49.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_trans_4_5 PF16994 70 - 250 1.3e-66 Glycosyl-transferase family 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 144
Acc36I ACCTGC 2 cut(s) 385, 599
AccB1I GGYRCC 2 cut(s) 157, 179
AccBSI CCGCTC 1 cut(s) 110
AccII CGCG 1 cut(s) 1017
AciI CCGC 4 cut(s) 23, 46, 110, 600
AclI AACGTT 1 cut(s) 667
AclWI GGATC 4 cut(s) 541, 554, 683, 1020
AcsI RAATTY 2 cut(s) 1005, 1084
AcuI CTGAAG 1 cut(s) 759
AcvI CACGTG 1 cut(s) 839
AcyI GRCGYC 2 cut(s) 35, 141
AfaI GTAC 3 cut(s) 304, 795, 1157
AfiI CCNNNNNNNGG 3 cut(s) 45, 129, 330
AflIII ACRYGT 2 cut(s) 628, 1158
AgsI TTSAA 2 cut(s) 460, 1138
AjuI GAANNNNNNNTTGG 4 cut(s) 362, 394, 843, 875
Alw26I GTCTC 4 cut(s) 85, 235, 683, 789
AlwI GGATC 4 cut(s) 541, 554, 683, 1020
AlwNI CAGNNNCTG 1 cut(s) 473
Ama87I CYCGRG 1 cut(s) 660
AoxI GGCC 4 cut(s) 257, 332, 412, 847
ApeKI GCWGC 4 cut(s) 10, 13, 907, 1061
ApoI RAATTY 2 cut(s) 1005, 1084
Asp700I GAANNNNTTC 1 cut(s) 513
AspLEI GCGC 1 cut(s) 201
AspS9I GGNCC 4 cut(s) 257, 382, 412, 892
AsuC2I CCSGG 1 cut(s) 386
AsuHPI GGTGA 2 cut(s) 331, 695
AsuNHI GCTAGC 1 cut(s) 277
AvaI CYCGRG 1 cut(s) 660
AvaII GGWCC 2 cut(s) 382, 892
BaeI ACNNNNGTAYC 2 cut(s) 294, 327
BamHI GGATCC 1 cut(s) 546
BanI GGYRCC 2 cut(s) 157, 179
BanII GRGCYC 1 cut(s) 170
BarI GAAGNNNNNNTAC 2 cut(s) 286, 318
BauI CACGAG 1 cut(s) 236
BbrPI CACGTG 1 cut(s) 839
BbsI GAAGAC 1 cut(s) 747
BbvI GCAGC 4 cut(s) 22, 25, 894, 1048
BccI CCATC 4 cut(s) 265, 478, 528, 827
BceAI ACGGC 1 cut(s) 480
BcgI CGANNNNNNTGC 2 cut(s) 1088, 1122
BcnI CCSGG 1 cut(s) 386
BcoDI GTCTC 4 cut(s) 85, 235, 683, 789
BfaI CTAG 4 cut(s) 189, 227, 278, 1058
BfmI CTRYAG 2 cut(s) 747, 1044
BfuAI ACCTGC 2 cut(s) 385, 599
BglII AGATCT 2 cut(s) 805, 853
BisI GCNGC 5 cut(s) 11, 14, 111, 908, 1062
BlsI GCNGC 5 cut(s) 12, 15, 112, 909, 1063
Bme1390I CCNGG 1 cut(s) 386
Bme18I GGWCC 2 cut(s) 382, 892
BmeT110I CYCGRG 1 cut(s) 660
BmgT120I GGNCC 4 cut(s) 257, 382, 412, 892
BmiI GGNNCC 4 cut(s) 134, 159, 181, 548
BmrFI CCNGG 1 cut(s) 386
BmsI GCATC 3 cut(s) 484, 912, 1155
BmtI GCTAGC 1 cut(s) 281
BpiI GAAGAC 1 cut(s) 747
BpuEI CTTGAG 2 cut(s) 422, 488
BpuMI CCSGG 1 cut(s) 386
BsaAI YACGTR 3 cut(s) 631, 839, 983
BsaHI GRCGYC 2 cut(s) 35, 141
BsaI GGTCTC 1 cut(s) 683
BsaJI CCNNGG 2 cut(s) 385, 706
BsaXI ACNNNNNCTCC 6 cut(s) 207, 237, 381, 411, 1033, 1063
Bsc4I CCNNNNNNNGG 3 cut(s) 45, 129, 330
Bse118I RCCGGY 1 cut(s) 334
Bse1I ACTGG 1 cut(s) 183
BseDI CCNNGG 2 cut(s) 385, 706
BseGI GGATG 2 cut(s) 489, 499
BseLI CCNNNNNNNGG 3 cut(s) 45, 129, 330
BseMII CTCAG 2 cut(s) 678, 1103
BseNI ACTGG 1 cut(s) 183
BseXI GCAGC 4 cut(s) 22, 25, 894, 1048
BseYI CCCAGC 1 cut(s) 473
BsgI GTGCAG 1 cut(s) 413
Bsh1236I CGCG 1 cut(s) 1017
Bsh1285I CGRYCG 1 cut(s) 130
BshFI GGCC 4 cut(s) 259, 334, 414, 849
BshNI GGYRCC 2 cut(s) 157, 179
BsiEI CGRYCG 1 cut(s) 130
BsiHKCI CYCGRG 1 cut(s) 660
BsiSI CCGG 2 cut(s) 335, 385
BslFI GGGAC 1 cut(s) 22
BslI CCNNNNNNNGG 3 cut(s) 45, 129, 330
BsmAI GTCTC 4 cut(s) 85, 235, 683, 789
BsmBI CGTCTC 1 cut(s) 85
BsmFI GGGAC 1 cut(s) 22
BsnI GGCC 4 cut(s) 259, 334, 414, 849
Bso31I GGTCTC 1 cut(s) 683
BsoBI CYCGRG 1 cut(s) 660
Bsp1286I GDGCHC 1 cut(s) 170
Bsp1407I TGTACA 1 cut(s) 1155
Bsp143I GATC 7 cut(s) 90, 127, 546, 675, 805, 853, 1012
BspACI CCGC 4 cut(s) 23, 46, 110, 600
BspANI GGCC 4 cut(s) 259, 334, 414, 849
BspCNI CTCAG 2 cut(s) 679, 1102
BspFNI CGCG 1 cut(s) 1017
BspHI TCATGA 1 cut(s) 204
BspLI GGNNCC 4 cut(s) 134, 159, 181, 548
BspMI ACCTGC 2 cut(s) 385, 599
BspOI GCTAGC 1 cut(s) 281
BspPI GGATC 4 cut(s) 541, 554, 683, 1020
BspT107I GGYRCC 2 cut(s) 157, 179
BspTNI GGTCTC 1 cut(s) 683
BsrBI CCGCTC 1 cut(s) 110
BsrFI RCCGGY 1 cut(s) 334
BsrGI TGTACA 1 cut(s) 1155
BsrI ACTGG 1 cut(s) 183
BssAI RCCGGY 1 cut(s) 334
BssECI CCNNGG 2 cut(s) 385, 706
BssMI GATC 7 cut(s) 90, 127, 546, 675, 805, 853, 1012
BssNI GRCGYC 2 cut(s) 35, 141
BssSI CACGAG 1 cut(s) 236
BssT1I CCWWGG 1 cut(s) 706
Bst2BI CACGAG 1 cut(s) 236
Bst4CI ACNGT 3 cut(s) 748, 830, 1045
BstACI GRCGYC 2 cut(s) 35, 141
BstAUI TGTACA 1 cut(s) 1155
BstBAI YACGTR 3 cut(s) 631, 839, 983
BstC8I GCNNGC 4 cut(s) 170, 279, 884, 927
BstDEI CTNAG 2 cut(s) 687, 1089
BstEII GGTNACC 1 cut(s) 319
BstF5I GGATG 2 cut(s) 489, 499
BstFNI CGCG 1 cut(s) 1017
BstHHI GCGC 1 cut(s) 201
BstKTI GATC 7 cut(s) 93, 130, 549, 678, 808, 856, 1015
BstMAI GTCTC 4 cut(s) 85, 235, 683, 789
BstMBI GATC 7 cut(s) 90, 127, 546, 675, 805, 853, 1012
BstMCI CGRYCG 1 cut(s) 130
BstMWI GCNNNNNNNGC 4 cut(s) 198, 440, 913, 922
BstNSI RCATGY 4 cut(s) 776, 929, 1156, 1162
BstPI GGTNACC 1 cut(s) 319
BstSCI CCNGG 1 cut(s) 384
BstSFI CTRYAG 2 cut(s) 747, 1044
BstSNI TACGTA 1 cut(s) 983
BstUI CGCG 1 cut(s) 1017
BstV1I GCAGC 4 cut(s) 22, 25, 894, 1048
BstV2I GAAGAC 1 cut(s) 747
BstX2I RGATCY 3 cut(s) 546, 805, 853
BstYI RGATCY 3 cut(s) 546, 805, 853
BsuRI GGCC 4 cut(s) 259, 334, 414, 849
BtsCI GGATG 2 cut(s) 489, 499
BtsIMutI CAGTG 2 cut(s) 744, 835
BveI ACCTGC 2 cut(s) 385, 599
Cac8I GCNNGC 4 cut(s) 170, 279, 884, 927
CaiI CAGNNNCTG 1 cut(s) 473
CciI TCATGA 1 cut(s) 204
CfoI GCGC 1 cut(s) 201
Cfr10I RCCGGY 1 cut(s) 334
Cfr13I GGNCC 4 cut(s) 257, 382, 412, 892
CseI GACGC 1 cut(s) 24
Csp6I GTAC 3 cut(s) 303, 794, 1156
CspCI CAANNNNNGTGG 2 cut(s) 918, 953
CviAII CATG 8 cut(s) 70, 205, 551, 773, 926, 949, 1153, 1159
CviQI GTAC 3 cut(s) 303, 794, 1156
DdeI CTNAG 2 cut(s) 687, 1089
DpnI GATC 7 cut(s) 92, 129, 548, 677, 807, 855, 1014
DpnII GATC 7 cut(s) 90, 127, 546, 675, 805, 853, 1012
Eco105I TACGTA 1 cut(s) 983
Eco130I CCWWGG 1 cut(s) 706
Eco24I GRGCYC 1 cut(s) 170
Eco31I GGTCTC 1 cut(s) 683
Eco47I GGWCC 2 cut(s) 382, 892
Eco57I CTGAAG 1 cut(s) 759
Eco72I CACGTG 1 cut(s) 839
Eco88I CYCGRG 1 cut(s) 660
Eco91I GGTNACC 1 cut(s) 319
EcoO65I GGTNACC 1 cut(s) 319
EcoT14I CCWWGG 1 cut(s) 706
EcoT22I ATGCAT 1 cut(s) 927
EcoT38I GRGCYC 1 cut(s) 170
ErhI CCWWGG 1 cut(s) 706
Esp3I CGTCTC 1 cut(s) 85
FaeI CATG 8 cut(s) 73, 208, 554, 776, 929, 952, 1156, 1162
FaqI GGGAC 1 cut(s) 22
FatI CATG 8 cut(s) 69, 204, 550, 772, 925, 948, 1152, 1158
FauI CCCGC 2 cut(s) 16, 607
Fnu4HI GCNGC 5 cut(s) 11, 14, 111, 908, 1062
FokI GGATG 2 cut(s) 496, 506
FriOI GRGCYC 1 cut(s) 170
Fsp4HI GCNGC 5 cut(s) 11, 14, 111, 908, 1062
FspBI CTAG 4 cut(s) 189, 227, 278, 1058
GlaI GCGC 1 cut(s) 200
GluI GCNGC 5 cut(s) 11, 14, 111, 908, 1062
GsaI CCCAGC 1 cut(s) 477
HaeIII GGCC 4 cut(s) 259, 334, 414, 849
HapII CCGG 2 cut(s) 335, 385
HgaI GACGC 1 cut(s) 24
HhaI GCGC 1 cut(s) 201
Hin1I GRCGYC 2 cut(s) 35, 141
Hin1II CATG 8 cut(s) 73, 208, 554, 776, 929, 952, 1156, 1162
Hin6I GCGC 1 cut(s) 199
HinP1I GCGC 1 cut(s) 199
HindIII AAGCTT 1 cut(s) 880
HinfI GANTC 4 cut(s) 119, 623, 782, 971
HpaII CCGG 2 cut(s) 335, 385
HphI GGTGA 2 cut(s) 331, 695
Hpy166II GTNNAC 2 cut(s) 703, 1030
Hpy188I TCNGA 6 cut(s) 107, 132, 149, 330, 406, 976
Hpy188III TCNNGA 7 cut(s) 82, 205, 457, 662, 1010, 1027, 1138
Hpy8I GTNNAC 2 cut(s) 703, 1030
Hpy99I CGWCG 3 cut(s) 143, 146, 149
HpyAV CCTTC 1 cut(s) 106
HpyCH4III ACNGT 3 cut(s) 748, 830, 1045
HpyCH4IV ACGT 5 cut(s) 141, 630, 667, 838, 982
HpyCH4V TGCA 9 cut(s) 340, 394, 608, 910, 925, 929, 1081, 1146, 1152
HpyF10VI GCNNNNNNNGC 4 cut(s) 198, 440, 913, 922
HpyF3I CTNAG 2 cut(s) 687, 1089
HpySE526I ACGT 5 cut(s) 141, 630, 667, 838, 982
Hsp92I GRCGYC 2 cut(s) 35, 141
Hsp92II CATG 8 cut(s) 73, 208, 554, 776, 929, 952, 1156, 1162
HspAI GCGC 1 cut(s) 199
Kzo9I GATC 7 cut(s) 90, 127, 546, 675, 805, 853, 1012
LmnI GCTCC 2 cut(s) 274, 1054
Lsp1109I GCAGC 4 cut(s) 22, 25, 894, 1048
LweI GCATC 3 cut(s) 484, 912, 1155
MaeI CTAG 4 cut(s) 189, 227, 278, 1058
MaeII ACGT 5 cut(s) 141, 630, 667, 838, 982
MaeIII GTNAC 5 cut(s) 319, 352, 631, 944, 983
MalI GATC 7 cut(s) 92, 129, 548, 677, 807, 855, 1014
MbiI CCGCTC 1 cut(s) 110
MboI GATC 7 cut(s) 90, 127, 546, 675, 805, 853, 1012
MboII GAAGA 7 cut(s) 91, 515, 661, 752, 815, 913, 1012
MfeI CAATTG 1 cut(s) 930
MflI RGATCY 3 cut(s) 546, 805, 853
MhlI GDGCHC 1 cut(s) 170
MluCI AATT 6 cut(s) 450, 488, 930, 977, 1005, 1084
MlyI GAGTC 2 cut(s) 791, 980
MmeI TCCRAC 4 cut(s) 127, 360, 384, 558
MnlI CCTC 4 cut(s) 146, 147, 324, 605
Mph1103I ATGCAT 1 cut(s) 927
MroXI GAANNNNTTC 1 cut(s) 513
MseI TTAA 3 cut(s) 290, 449, 573
MslI CAYNNNNRTG 2 cut(s) 1151, 1157
MspA1I CMGCKG 1 cut(s) 602
MspI CCGG 2 cut(s) 335, 385
MspR9I CCNGG 1 cut(s) 386
MunI CAATTG 1 cut(s) 930
MvnI CGCG 1 cut(s) 1017
MwoI GCNNNNNNNGC 4 cut(s) 198, 440, 913, 922
NciI CCSGG 1 cut(s) 386
NdeII GATC 7 cut(s) 90, 127, 546, 675, 805, 853, 1012
NheI GCTAGC 1 cut(s) 277
NlaIII CATG 8 cut(s) 73, 208, 554, 776, 929, 952, 1156, 1162
NlaIV GGNNCC 4 cut(s) 134, 159, 181, 548
NmuCI GTSAC 3 cut(s) 319, 352, 944
NsiI ATGCAT 1 cut(s) 927
NspI RCATGY 4 cut(s) 776, 929, 1156, 1162
PaeI GCATGC 1 cut(s) 929
PaeR7I CTCGAG 1 cut(s) 660
PagI TCATGA 1 cut(s) 204
PciI ACATGT 1 cut(s) 1158
PcsI WCGNNNNNNNCGW 1 cut(s) 123
PdmI GAANNNNTTC 1 cut(s) 513
PfeI GAWTC 2 cut(s) 119, 623
PflFI GACNNNGTC 1 cut(s) 143
PkrI GCNGC 5 cut(s) 12, 15, 112, 909, 1063
Ple19I CGATCG 1 cut(s) 130
PleI GAGTC 2 cut(s) 790, 979
PmaCI CACGTG 1 cut(s) 839
PmlI CACGTG 1 cut(s) 839
PpsI GAGTC 2 cut(s) 790, 979
Ppu21I YACGTR 3 cut(s) 631, 839, 983
PscI ACATGT 1 cut(s) 1158
Psp1406I AACGTT 1 cut(s) 667
PspCI CACGTG 1 cut(s) 839
PspEI GGTNACC 1 cut(s) 319
PspFI CCCAGC 1 cut(s) 473
PspN4I GGNNCC 4 cut(s) 134, 159, 181, 548
PspPI GGNCC 4 cut(s) 257, 382, 412, 892
PstNI CAGNNNCTG 1 cut(s) 473
PsuI RGATCY 3 cut(s) 546, 805, 853
PsyI GACNNNGTC 1 cut(s) 143
PvuI CGATCG 1 cut(s) 130
RsaI GTAC 3 cut(s) 304, 795, 1157
RsaNI GTAC 3 cut(s) 303, 794, 1156
RseI CAYNNNNRTG 2 cut(s) 1151, 1157
SaqAI TTAA 3 cut(s) 290, 449, 573
SatI GCNGC 5 cut(s) 11, 14, 111, 908, 1062
Sau3AI GATC 7 cut(s) 90, 127, 546, 675, 805, 853, 1012
Sau96I GGNCC 4 cut(s) 257, 382, 412, 892
SchI GAGTC 2 cut(s) 791, 980
ScrFI CCNGG 1 cut(s) 386
SduI GDGCHC 1 cut(s) 170
SfaNI GCATC 3 cut(s) 484, 912, 1155
SfcI CTRYAG 2 cut(s) 747, 1044
Sfr274I CTCGAG 1 cut(s) 660
SinI GGWCC 2 cut(s) 382, 892
SlaI CTCGAG 1 cut(s) 660
SmiMI CAYNNNNRTG 2 cut(s) 1151, 1157
SmlI CTYRAG 3 cut(s) 437, 503, 660
SmoI CTYRAG 3 cut(s) 437, 503, 660
SnaBI TACGTA 1 cut(s) 983
SphI GCATGC 1 cut(s) 929
Sse9I AATT 6 cut(s) 450, 488, 930, 977, 1005, 1084
SsiI CCGC 4 cut(s) 23, 46, 110, 600
SspI AATATT 1 cut(s) 644
SspMI CTAG 4 cut(s) 189, 227, 278, 1058
StyD4I CCNGG 1 cut(s) 384
StyI CCWWGG 1 cut(s) 706
TaaI ACNGT 3 cut(s) 748, 830, 1045
TaiI ACGT 5 cut(s) 144, 633, 670, 841, 985
TaqI TCGA 4 cut(s) 83, 117, 138, 661
TasI AATT 6 cut(s) 450, 488, 930, 977, 1005, 1084
TatI WGTACW 1 cut(s) 1155
TauI GCSGC 1 cut(s) 113
TfiI GAWTC 2 cut(s) 119, 623
Tru1I TTAA 3 cut(s) 290, 449, 573
Tru9I TTAA 3 cut(s) 290, 449, 573
TscAI CASTG 2 cut(s) 751, 835
TseFI GTSAC 3 cut(s) 319, 352, 944
TseI GCWGC 4 cut(s) 10, 13, 907, 1061
Tsp45I GTSAC 3 cut(s) 319, 352, 944
TspDTI ATGAA 9 cut(s) 91, 193, 221, 567, 858, 891, 1010, 1013, 1113
TspGWI ACGGA 1 cut(s) 67
TspRI CASTG 2 cut(s) 751, 835
Tth111I GACNNNGTC 1 cut(s) 143
VpaK11BI GGWCC 2 cut(s) 382, 892
XapI RAATTY 2 cut(s) 1005, 1084
XceI RCATGY 4 cut(s) 776, 929, 1156, 1162
XcmI CCANNNNNNNNNTGG 2 cut(s) 537, 557
XhoI CTCGAG 1 cut(s) 660
XmnI GAANNNNTTC 1 cut(s) 513
XspI CTAG 4 cut(s) 189, 227, 278, 1058
ZraI GACGTC 1 cut(s) 142
Zsp2I ATGCAT 1 cut(s) 927
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.