Rorug02G0088200

Glycosyl-transferase family 4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0003561
Physical Location & Seq
Forward (+)
7063621 .. 7067422
3802 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0088200.1

Sequence Viewer

Length: 1056 bp
ATGGTCAAGTATTATTCTCAGAGGTCAACCCCCGGTGGCTTGTTAATCAGTGAAGGCACTTCGCCCTCCGACACAAGCGCTGGGTATCCACGTGTTCCTGGGATTTACACGGATGAACAGGTTGAGGCATGGAAAAAGGTTGTCGACGCCGTTCACGCCAAAGGTGCCATTTTTTTCTGTCAACTTTGGCATGTAGGTCGTGCTTCTCATCAAGTTTACCAACCTGGCGGGGGTTCGCCGATTTCTTCAACCAACAATCCCATTTCAAATAGATGGAAAGTTCCGATGCCAGATGGATCTCAAGAGACTTACCCACAACCTCGACGCCTCGAAACCCACGAAATACCTCTGATTGTTGAGCAGTATCGCCGCGCTGCCTTAAATGCAGTTCGAGCAGGTTTTGATGGAATTGAGATTCATGCGGCACACGGCTACCTCATTGATCAATTCTTGAAAGATGGAATCAACGATCGAACTGATGAGTATGGTGGGTCGCTTGCAAACCGTTGCAAATTCTTGATTCAAATTGTTCAAGCAGTAGTTGAAGCAATTGGTGCTGACAGAGTTGCCGTCAGAATCTCACCAGCTATTGATTTTCATGATGCTACGGACTCCGACCCGATTGGACTAGGCCTTGCAGTGATTGGCAGGCTCAATGAGCTTCAATACAACGTAGGTTCAAAGCTCGCTTATCTCCATGTGACTCAGCCTCGTTTCGCTACTCAAATAAACGTAGGCTGGTCCGAGTTTGATAAAGACAGAGAAGCTCAATTCATGAGGACTTTGCGAGAAGCTTATCAAGGTACATTCATGGCTAGTGGAGGGTTTACGAGAGAACTAGGAATGGAAACCGTGGCTTCCGGTGATGCTGATTTAGTGTCGTTTGGCCGAAATTTTATCTCAAACCCTGACTTGGTGTTGAGGTTTAAGTTGAATGCTCCTTTGAACAAGTATATTAGGGAGACTTTCTACACCGATGACCCTGTAGTTGGGTACACAGACTACCCTTTTCTGGAAAGAGAAAGTGTGAAAGAGGATGAGCTCTCCCCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_trans_4_5 Glycos_transf_1

Protein Analysis

351

Amino Acids

39.11

Weight (kDa)

5.44

Isoelectric Point (pI)

32.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oxidored_FMN PF00724 1 - 315 1.4e-75 NADH:flavin oxidoreductase / NADH oxidase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 386
AccB1I GGYRCC 1 cut(s) 164
AccI GTMKAC 1 cut(s) 144
AccII CGCG 1 cut(s) 372
AciI CCGC 3 cut(s) 228, 370, 422
AclWI GGATC 1 cut(s) 304
AcoI YGGCCR 1 cut(s) 886
AcsI RAATTY 2 cut(s) 512, 892
AcvI CACGTG 1 cut(s) 92
AcyI GRCGYC 2 cut(s) 147, 325
AfaI GTAC 2 cut(s) 805, 995
AfeI AGCGCT 1 cut(s) 79
AfiI CCNNNNNNNGG 4 cut(s) 230, 913, 989, 1012
AflIII ACRYGT 1 cut(s) 91
AjnI CCWGG 2 cut(s) 97, 223
AluBI AGCT 6 cut(s) 587, 661, 685, 767, 794, 1042
AluI AGCT 6 cut(s) 587, 661, 685, 767, 794, 1042
Alw21I GWGCWC 1 cut(s) 1044
Alw26I GTCTC 2 cut(s) 299, 956
AlwI GGATC 1 cut(s) 304
Aor51HI AGCGCT 1 cut(s) 79
AoxI GGCC 2 cut(s) 631, 886
ApeKI GCWGC 1 cut(s) 374
ApoI RAATTY 2 cut(s) 512, 892
AspLEI GCGC 2 cut(s) 80, 374
AspS9I GGNCC 1 cut(s) 741
AsuC2I CCSGG 1 cut(s) 33
AsuHPI GGTGA 2 cut(s) 573, 875
AvaII GGWCC 1 cut(s) 741
BanI GGYRCC 1 cut(s) 164
BanII GRGCYC 1 cut(s) 1044
BbrPI CACGTG 1 cut(s) 92
Bbv12I GWGCWC 1 cut(s) 1044
BbvI GCAGC 1 cut(s) 361
BccI CCATC 4 cut(s) 267, 287, 398, 452
BceAI ACGGC 3 cut(s) 134, 445, 554
BcgI CGANNNNNNTGC 2 cut(s) 179, 213
BciT130I CCWGG 2 cut(s) 99, 225
BciVI GTATCC 1 cut(s) 96
BclI TGATCA 1 cut(s) 442
BcnI CCSGG 1 cut(s) 33
BcoDI GTCTC 2 cut(s) 299, 956
BfaI CTAG 3 cut(s) 629, 816, 839
BfmI CTRYAG 1 cut(s) 984
BfoI RGCGCY 1 cut(s) 81
BfuAI ACCTGC 1 cut(s) 386
BfuI GTATCC 1 cut(s) 96
BisI GCNGC 3 cut(s) 370, 375, 423
BlsI GCNGC 3 cut(s) 371, 376, 424
Bme1390I CCNGG 3 cut(s) 33, 99, 225
Bme18I GGWCC 1 cut(s) 741
BmgT120I GGNCC 1 cut(s) 741
BmiI GGNNCC 1 cut(s) 166
BmrFI CCNGG 3 cut(s) 33, 99, 225
BmsI GCATC 3 cut(s) 276, 592, 856
BpuEI CTTGAG 1 cut(s) 285
BpuMI CCSGG 1 cut(s) 33
BsaAI YACGTR 1 cut(s) 92
BsaHI GRCGYC 2 cut(s) 147, 325
BsaJI CCNNGG 3 cut(s) 31, 98, 852
BsaWI WCCGGW 1 cut(s) 860
Bsc4I CCNNNNNNNGG 4 cut(s) 230, 913, 989, 1012
BseBI CCWGG 2 cut(s) 99, 225
BseDI CCNNGG 3 cut(s) 31, 98, 852
BseGI GGATG 2 cut(s) 118, 1042
BseLI CCNNNNNNNGG 4 cut(s) 230, 913, 989, 1012
BseMII CTCAG 2 cut(s) 32, 719
BseXI GCAGC 1 cut(s) 361
BseYI CCCAGC 1 cut(s) 80
Bsh1236I CGCG 1 cut(s) 372
Bsh1285I CGRYCG 1 cut(s) 472
BshFI GGCC 2 cut(s) 633, 888
BshNI GGYRCC 1 cut(s) 164
BsiEI CGRYCG 1 cut(s) 472
BsiHKAI GWGCWC 1 cut(s) 1044
BsiSI CCGG 2 cut(s) 33, 861
BslI CCNNNNNNNGG 4 cut(s) 230, 913, 989, 1012
BsmAI GTCTC 2 cut(s) 299, 956
BsmI GAATGC 1 cut(s) 940
BsnI GGCC 2 cut(s) 633, 888
Bsp1286I GDGCHC 1 cut(s) 1044
Bsp143I GATC 3 cut(s) 296, 442, 469
BspACI CCGC 3 cut(s) 228, 370, 422
BspANI GGCC 2 cut(s) 633, 888
BspCNI CTCAG 2 cut(s) 31, 718
BspFNI CGCG 1 cut(s) 372
BspHI TCATGA 2 cut(s) 598, 774
BspLI GGNNCC 1 cut(s) 166
BspMI ACCTGC 1 cut(s) 386
BspPI GGATC 1 cut(s) 304
BspT107I GGYRCC 1 cut(s) 164
BssECI CCNNGG 3 cut(s) 31, 98, 852
BssMI GATC 3 cut(s) 296, 442, 469
BssNI GRCGYC 2 cut(s) 147, 325
Bst2UI CCWGG 2 cut(s) 99, 225
Bst4CI ACNGT 2 cut(s) 506, 853
BstACI GRCGYC 2 cut(s) 147, 325
BstAPI GCANNNNNTGC 1 cut(s) 554
BstBAI YACGTR 1 cut(s) 92
BstC8I GCNNGC 3 cut(s) 498, 650, 687
BstDEI CTNAG 2 cut(s) 18, 705
BstDSI CCRYGG 1 cut(s) 852
BstF5I GGATG 2 cut(s) 118, 1042
BstFNI CGCG 1 cut(s) 372
BstH2I RGCGCY 1 cut(s) 81
BstHHI GCGC 2 cut(s) 80, 374
BstKTI GATC 3 cut(s) 299, 445, 472
BstMAI GTCTC 2 cut(s) 299, 956
BstMBI GATC 3 cut(s) 296, 442, 469
BstMCI CGRYCG 1 cut(s) 472
BstMWI GCNNNNNNNGC 6 cut(s) 155, 164, 383, 392, 554, 658
BstNI CCWGG 2 cut(s) 99, 225
BstNSI RCATGY 1 cut(s) 194
BstSCI CCNGG 3 cut(s) 31, 97, 223
BstSFI CTRYAG 1 cut(s) 984
BstUI CGCG 1 cut(s) 372
BstV1I GCAGC 1 cut(s) 361
BstX2I RGATCY 1 cut(s) 296
BstYI RGATCY 1 cut(s) 296
BsuI GTATCC 1 cut(s) 96
BsuRI GGCC 2 cut(s) 633, 888
BtgI CCRYGG 1 cut(s) 852
BtsCI GGATG 2 cut(s) 118, 1042
BtsI GCAGTG 1 cut(s) 645
BtsIMutI CAGTG 2 cut(s) 55, 645
BveI ACCTGC 1 cut(s) 386
Cac8I GCNNGC 3 cut(s) 498, 650, 687
CciI TCATGA 2 cut(s) 598, 774
CfoI GCGC 2 cut(s) 80, 374
Cfr13I GGNCC 1 cut(s) 741
CseI GACGC 2 cut(s) 155, 333
Csp6I GTAC 2 cut(s) 804, 994
CviAII CATG 7 cut(s) 129, 191, 419, 599, 698, 775, 811
CviQI GTAC 2 cut(s) 804, 994
DdeI CTNAG 2 cut(s) 18, 705
DpnI GATC 3 cut(s) 298, 444, 471
DpnII GATC 3 cut(s) 296, 442, 469
EaeI YGGCCR 1 cut(s) 886
Ecl136II GAGCTC 1 cut(s) 1042
Eco147I AGGCCT 1 cut(s) 633
Eco24I GRGCYC 1 cut(s) 1044
Eco47I GGWCC 1 cut(s) 741
Eco47III AGCGCT 1 cut(s) 79
Eco53kI GAGCTC 1 cut(s) 1042
Eco72I CACGTG 1 cut(s) 92
EcoICRI GAGCTC 1 cut(s) 1042
EcoRII CCWGG 2 cut(s) 97, 223
EcoT38I GRGCYC 1 cut(s) 1044
FaeI CATG 7 cut(s) 132, 194, 422, 602, 701, 778, 814
FaiI YATR 9 cut(s) 130, 192, 420, 486, 600, 699, 776, 812, 954
FatI CATG 7 cut(s) 128, 190, 418, 598, 697, 774, 810
FauI CCCGC 1 cut(s) 221
FbaI TGATCA 1 cut(s) 442
FblI GTMKAC 1 cut(s) 144
Fnu4HI GCNGC 3 cut(s) 370, 375, 423
FokI GGATG 2 cut(s) 125, 1049
FriOI GRGCYC 1 cut(s) 1044
Fsp4HI GCNGC 3 cut(s) 370, 375, 423
FspBI CTAG 3 cut(s) 629, 816, 839
GlaI GCGC 2 cut(s) 79, 373
GluI GCNGC 3 cut(s) 370, 375, 423
GsaI CCCAGC 1 cut(s) 84
HaeII RGCGCY 1 cut(s) 81
HaeIII GGCC 2 cut(s) 633, 888
HapII CCGG 2 cut(s) 33, 861
HgaI GACGC 2 cut(s) 155, 333
HhaI GCGC 2 cut(s) 80, 374
Hin1I GRCGYC 2 cut(s) 147, 325
Hin1II CATG 7 cut(s) 132, 194, 422, 602, 701, 778, 814
Hin6I GCGC 2 cut(s) 78, 372
HinP1I GCGC 2 cut(s) 78, 372
HincII GTYRAC 3 cut(s) 27, 145, 182
HindII GTYRAC 3 cut(s) 27, 145, 182
HindIII AAGCTT 1 cut(s) 792
HinfI GANTC 6 cut(s) 415, 462, 520, 576, 611, 703
HpaII CCGG 2 cut(s) 33, 861
HphI GGTGA 2 cut(s) 573, 875
Hpy166II GTNNAC 7 cut(s) 27, 145, 154, 182, 217, 828, 996
Hpy188I TCNGA 7 cut(s) 21, 70, 285, 351, 575, 616, 745
Hpy188III TCNNGA 6 cut(s) 302, 451, 517, 599, 775, 1013
Hpy8I GTNNAC 7 cut(s) 27, 145, 154, 182, 217, 828, 996
Hpy99I CGWCG 2 cut(s) 149, 327
HpyAV CCTTC 1 cut(s) 47
HpyCH4III ACNGT 2 cut(s) 506, 853
HpyCH4IV ACGT 3 cut(s) 91, 672, 732
HpyCH4V TGCA 4 cut(s) 386, 500, 510, 638
HpyF10VI GCNNNNNNNGC 6 cut(s) 155, 164, 383, 392, 554, 658
HpyF3I CTNAG 2 cut(s) 18, 705
HpySE526I ACGT 3 cut(s) 91, 672, 732
Hsp92I GRCGYC 2 cut(s) 147, 325
Hsp92II CATG 7 cut(s) 132, 194, 422, 602, 701, 778, 814
HspAI GCGC 2 cut(s) 78, 372
Ksp22I TGATCA 1 cut(s) 442
Kzo9I GATC 3 cut(s) 296, 442, 469
LmnI GCTCC 1 cut(s) 943
Lsp1109I GCAGC 1 cut(s) 361
LweI GCATC 3 cut(s) 276, 592, 856
MaeI CTAG 3 cut(s) 629, 816, 839
MaeII ACGT 3 cut(s) 91, 672, 732
MaeIII GTNAC 1 cut(s) 700
MalI GATC 3 cut(s) 298, 444, 471
MboI GATC 3 cut(s) 296, 442, 469
MboII GAAGA 1 cut(s) 237
MfeI CAATTG 1 cut(s) 549
MflI RGATCY 1 cut(s) 296
MhlI GDGCHC 1 cut(s) 1044
MluCI AATT 7 cut(s) 408, 446, 512, 525, 549, 770, 892
MlyI GAGTC 2 cut(s) 605, 697
MmeI TCCRAC 2 cut(s) 93, 639
MseI TTAA 3 cut(s) 44, 380, 927
MspI CCGG 2 cut(s) 33, 861
MspR9I CCNGG 3 cut(s) 33, 99, 225
MunI CAATTG 1 cut(s) 549
Mva1269I GAATGC 1 cut(s) 940
MvaI CCWGG 2 cut(s) 99, 225
MvnI CGCG 1 cut(s) 372
MwoI GCNNNNNNNGC 6 cut(s) 155, 164, 383, 392, 554, 658
NciI CCSGG 1 cut(s) 33
NdeII GATC 3 cut(s) 296, 442, 469
NlaIII CATG 7 cut(s) 132, 194, 422, 602, 701, 778, 814
NlaIV GGNNCC 1 cut(s) 166
NmuCI GTSAC 1 cut(s) 700
NspI RCATGY 1 cut(s) 194
PagI TCATGA 2 cut(s) 598, 774
PceI AGGCCT 1 cut(s) 633
PcsI WCGNNNNNNNCGW 1 cut(s) 336
PctI GAATGC 1 cut(s) 940
PfeI GAWTC 4 cut(s) 415, 462, 520, 576
PkrI GCNGC 3 cut(s) 371, 376, 424
Ple19I CGATCG 1 cut(s) 472
PleI GAGTC 2 cut(s) 605, 697
PmaCI CACGTG 1 cut(s) 92
PmlI CACGTG 1 cut(s) 92
PpsI GAGTC 2 cut(s) 605, 697
Ppu21I YACGTR 1 cut(s) 92
Psp124BI GAGCTC 1 cut(s) 1044
Psp6I CCWGG 2 cut(s) 97, 223
PspCI CACGTG 1 cut(s) 92
PspFI CCCAGC 1 cut(s) 80
PspGI CCWGG 2 cut(s) 97, 223
PspN4I GGNNCC 1 cut(s) 166
PspPI GGNCC 1 cut(s) 741
PsuI RGATCY 1 cut(s) 296
PvuI CGATCG 1 cut(s) 472
RsaI GTAC 2 cut(s) 805, 995
RsaNI GTAC 2 cut(s) 804, 994
SacI GAGCTC 1 cut(s) 1044
SalI GTCGAC 1 cut(s) 143
SaqAI TTAA 3 cut(s) 44, 380, 927
SatI GCNGC 3 cut(s) 370, 375, 423
Sau3AI GATC 3 cut(s) 296, 442, 469
Sau96I GGNCC 1 cut(s) 741
SchI GAGTC 2 cut(s) 605, 697
ScrFI CCNGG 3 cut(s) 33, 99, 225
SduI GDGCHC 1 cut(s) 1044
SfaNI GCATC 3 cut(s) 276, 592, 856
SfcI CTRYAG 1 cut(s) 984
SinI GGWCC 1 cut(s) 741
SmlI CTYRAG 1 cut(s) 300
SmoI CTYRAG 1 cut(s) 300
Sse9I AATT 7 cut(s) 408, 446, 512, 525, 549, 770, 892
SseBI AGGCCT 1 cut(s) 633
SsiI CCGC 3 cut(s) 228, 370, 422
SspMI CTAG 3 cut(s) 629, 816, 839
SstI GAGCTC 1 cut(s) 1044
StuI AGGCCT 1 cut(s) 633
StyD4I CCNGG 3 cut(s) 31, 97, 223
TaaI ACNGT 2 cut(s) 506, 853
TaiI ACGT 3 cut(s) 94, 675, 735
TaqI TCGA 5 cut(s) 144, 322, 330, 391, 472
TasI AATT 7 cut(s) 408, 446, 512, 525, 549, 770, 892
TauI GCSGC 2 cut(s) 372, 425
TfiI GAWTC 4 cut(s) 415, 462, 520, 576
Tru1I TTAA 3 cut(s) 44, 380, 927
Tru9I TTAA 3 cut(s) 44, 380, 927
TscAI CASTG 2 cut(s) 55, 645
TseFI GTSAC 1 cut(s) 700
TseI GCWGC 1 cut(s) 374
Tsp45I GTSAC 1 cut(s) 700
TspDTI ATGAA 5 cut(s) 129, 407, 587, 763, 799
TspGWI ACGGA 2 cut(s) 125, 623
TspRI CASTG 2 cut(s) 55, 645
VpaK11BI GGWCC 1 cut(s) 741
XapI RAATTY 2 cut(s) 512, 892
XceI RCATGY 1 cut(s) 194
XmiI GTMKAC 1 cut(s) 144
XspI CTAG 3 cut(s) 629, 816, 839
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.