AT1G20520

Arabidopsis protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015948
Physical Location & Seq
Reverse (-)
7106922 .. 7107617
696 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G20520.1

Sequence Viewer

Length: 696 bp
ATGGCGCTACTGGACTTGGAAGGTTTGAGAGAACTACAAGACTGCGCAAACTATCTTCTCGATCACTGTCCAGAAGCAAGAGAGTCTCTGTGCCAACAAGGGAAAGAGAACTGGATCGAGCAAGTCTCTGAAGCTTCACTAATAATGTTAGATGTCTGTAATGTGTCGAAAGATGTCATGGCACTCGTGAGACATGGCCTGCAAGATCTTCAACTGACTCTGCGCTGTAATGGATCAAACCTTAGTGAAAAGGTTGCAGCGTATAATCGGTATAGGAACAAGCTCAAGAAGGAAACGCTCAAGTGTTTAAATAGTCTAAAGAGTATTGAAGGAGGAGGGAGAGGGATGATGGAGATGCAGAGCATAGAGCAGAACCTTCTGTTTGTTGCTGAGGTTTTGAAAGAAGTGAGAAGAGCCGTTGTGACTATGGTTGAGTCTCTGTTCTCACTCGTATGTGTTCCTTGGCTCGAGAGAAAACCGAGCATAGGGTCATTTTCTTCTATCTTTACGATGCAGTTTTGCTGCTTTGATGATGCGTGGGACGAAGTAGCGATGCGGAGCGCAAGTACAAGGTTGGAGGCTGCAGAGATCACTGTTGAGGAGCTTGAGATCGAGTTGGAGTGTATTTTCCGGCGACTGATTCAGACCAGAGTTTCACTTCTTAATATTCTTACAGCTAAAACATCTCCGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

231

Amino Acids

26.19

Weight (kDa)

5.09

Isoelectric Point (pI)

51.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 6 - 223 9.7e-57 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015948)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20520 AT1G76210
fragaria_vesca FvH4_2g37620
malus_domestica MD15G1003300.v1.1
prunus_persica Prupe.1G355700_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0304111
rosa_laevigata RLG00000011014
rosa_multiflora Rmu_ssc0000218.1_g000003
rosa_roxburghii Rroxscaffold_7G00164060
rosa_rugosa Rorug06G0327700
rosa_samantha Rh6AG441700 Rh6BG461100 Rh6CG453900 Rh6DG441100
rosa_wichuraiana Rw6G038280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 46
AciI CCGC 1 cut(s) 556
AclWI GGATC 2 cut(s) 122, 241
AcuI CTGAAG 1 cut(s) 150
AfaI GTAC 1 cut(s) 568
AfiI CCNNNNNNNGG 1 cut(s) 485
AgsI TTSAA 3 cut(s) 212, 329, 400
AluBI AGCT 4 cut(s) 134, 283, 604, 677
AluI AGCT 4 cut(s) 134, 283, 604, 677
Alw26I GTCTC 4 cut(s) 90, 130, 184, 441
AlwI GGATC 2 cut(s) 122, 241
Ama87I CYCGRG 1 cut(s) 467
AoxI GGCC 1 cut(s) 196
ApeKI GCWGC 3 cut(s) 257, 522, 581
AspLEI GCGC 4 cut(s) 7, 47, 225, 563
AvaI CYCGRG 1 cut(s) 467
BauI CACGAG 1 cut(s) 185
BbvCI CCTCAGC 1 cut(s) 390
BbvI GCAGC 3 cut(s) 269, 509, 568
BccI CCATC 1 cut(s) 343
BceAI ACGGC 1 cut(s) 401
BcoDI GTCTC 4 cut(s) 90, 130, 184, 441
BfmI CTRYAG 1 cut(s) 582
BfoI RGCGCY 1 cut(s) 8
BglII AGATCT 1 cut(s) 205
BisI GCNGC 3 cut(s) 258, 523, 582
BlsI GCNGC 3 cut(s) 259, 524, 583
BmeT110I CYCGRG 1 cut(s) 467
BmsI GCATC 4 cut(s) 345, 501, 523, 543
BplI GAGNNNNNCTC 2 cut(s) 110, 142
Bpu10I CCTNAGC 1 cut(s) 390
BpuEI CTTGAG 3 cut(s) 269, 284, 626
BsaJI CCNNGG 1 cut(s) 461
BsaWI WCCGGW 1 cut(s) 688
BsaXI ACNNNNNCTCC 2 cut(s) 550, 580
Bsc4I CCNNNNNNNGG 1 cut(s) 485
Bse1I ACTGG 2 cut(s) 15, 116
BseDI CCNNGG 1 cut(s) 461
BseGI GGATG 1 cut(s) 351
BseLI CCNNNNNNNGG 1 cut(s) 485
BseMII CTCAG 1 cut(s) 381
BseNI ACTGG 2 cut(s) 15, 116
BseRI GAGGAG 2 cut(s) 348, 614
BseXI GCAGC 3 cut(s) 269, 509, 568
BshFI GGCC 1 cut(s) 198
BsiHKCI CYCGRG 1 cut(s) 467
BsiSI CCGG 2 cut(s) 631, 689
BslFI GGGAC 1 cut(s) 554
BslI CCNNNNNNNGG 1 cut(s) 485
BsmAI GTCTC 4 cut(s) 90, 130, 184, 441
BsmFI GGGAC 1 cut(s) 554
BsnI GGCC 1 cut(s) 198
BsoBI CYCGRG 1 cut(s) 467
Bsp143I GATC 6 cut(s) 61, 114, 205, 233, 588, 609
BspACI CCGC 1 cut(s) 556
BspANI GGCC 1 cut(s) 198
BspCNI CTCAG 1 cut(s) 382
BspMAI CTGCAG 1 cut(s) 586
BspPI GGATC 2 cut(s) 122, 241
BspQI GCTCTTC 1 cut(s) 406
BsrI ACTGG 2 cut(s) 15, 116
BssECI CCNNGG 1 cut(s) 461
BssMI GATC 6 cut(s) 61, 114, 205, 233, 588, 609
BssSI CACGAG 1 cut(s) 185
BssT1I CCWWGG 1 cut(s) 461
Bst2BI CACGAG 1 cut(s) 185
Bst4CI ACNGT 2 cut(s) 68, 595
Bst6I CTCTTC 1 cut(s) 406
BstC8I GCNNGC 1 cut(s) 200
BstDEI CTNAG 2 cut(s) 242, 390
BstF5I GGATG 1 cut(s) 351
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 4 cut(s) 7, 47, 225, 563
BstKTI GATC 6 cut(s) 64, 117, 208, 236, 591, 612
BstMAI GTCTC 4 cut(s) 90, 130, 184, 441
BstMBI GATC 6 cut(s) 61, 114, 205, 233, 588, 609
BstSFI CTRYAG 1 cut(s) 582
BstV1I GCAGC 3 cut(s) 269, 509, 568
BstX2I RGATCY 1 cut(s) 205
BstYI RGATCY 1 cut(s) 205
BsuRI GGCC 1 cut(s) 198
BtgZI GCGATG 1 cut(s) 566
BtsCI GGATG 1 cut(s) 351
BtsIMutI CAGTG 2 cut(s) 64, 591
Cac8I GCNNGC 1 cut(s) 200
CfoI GCGC 4 cut(s) 7, 47, 225, 563
Csp6I GTAC 1 cut(s) 567
CviAII CATG 2 cut(s) 178, 194
CviJI RGCY 8 cut(s) 134, 198, 283, 416, 466, 581, 604, 677
CviKI_1 RGCY 8 cut(s) 134, 198, 283, 416, 466, 581, 604, 677
CviQI GTAC 1 cut(s) 567
DdeI CTNAG 2 cut(s) 242, 390
DpnI GATC 6 cut(s) 63, 116, 207, 235, 590, 611
DpnII GATC 6 cut(s) 61, 114, 205, 233, 588, 609
DraI TTTAAA 1 cut(s) 309
Eam1104I CTCTTC 1 cut(s) 406
EarI CTCTTC 1 cut(s) 406
Eco130I CCWWGG 1 cut(s) 461
Eco57I CTGAAG 1 cut(s) 150
Eco88I CYCGRG 1 cut(s) 467
EcoT14I CCWWGG 1 cut(s) 461
ErhI CCWWGG 1 cut(s) 461
FaeI CATG 2 cut(s) 181, 197
FaiI YATR 8 cut(s) 179, 195, 264, 273, 365, 428, 454, 485
FaqI GGGAC 1 cut(s) 554
FatI CATG 2 cut(s) 177, 193
Fnu4HI GCNGC 3 cut(s) 258, 523, 582
FokI GGATG 1 cut(s) 358
Fsp4HI GCNGC 3 cut(s) 258, 523, 582
FspI TGCGCA 1 cut(s) 46
GlaI GCGC 4 cut(s) 6, 46, 224, 562
GluI GCNGC 3 cut(s) 258, 523, 582
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 1 cut(s) 198
HapII CCGG 2 cut(s) 631, 689
HhaI GCGC 4 cut(s) 7, 47, 225, 563
Hin1II CATG 2 cut(s) 181, 197
Hin6I GCGC 4 cut(s) 5, 45, 223, 561
HinP1I GCGC 4 cut(s) 5, 45, 223, 561
HindIII AAGCTT 1 cut(s) 132
HinfI GANTC 4 cut(s) 83, 217, 434, 640
HpaII CCGG 2 cut(s) 631, 689
Hpy188I TCNGA 2 cut(s) 130, 645
Hpy188III TCNNGA 5 cut(s) 59, 71, 187, 286, 469
HpyAV CCTTC 4 cut(s) 14, 283, 323, 386
HpyCH4III ACNGT 2 cut(s) 68, 595
HpyCH4V TGCA 5 cut(s) 202, 257, 358, 514, 584
HpyF3I CTNAG 2 cut(s) 242, 390
Hsp92II CATG 2 cut(s) 181, 197
HspAI GCGC 4 cut(s) 5, 45, 223, 561
Kzo9I GATC 6 cut(s) 61, 114, 205, 233, 588, 609
LguI GCTCTTC 1 cut(s) 406
LmnI GCTCC 2 cut(s) 558, 601
LpnPI CCDG 5 cut(s) 84, 97, 212, 644, 661
Lsp1109I GCAGC 3 cut(s) 269, 509, 568
LweI GCATC 4 cut(s) 345, 501, 523, 543
MaeIII GTNAC 1 cut(s) 421
MalI GATC 6 cut(s) 63, 116, 207, 235, 590, 611
MboI GATC 6 cut(s) 61, 114, 205, 233, 588, 609
MboII GAAGA 4 cut(s) 47, 200, 423, 489
MflI RGATCY 1 cut(s) 205
MlyI GAGTC 3 cut(s) 92, 211, 443
MmeI TCCRAC 2 cut(s) 555, 597
MnlI CCTC 6 cut(s) 326, 329, 335, 385, 571, 592
MseI TTAA 2 cut(s) 308, 663
MslI CAYNNNNRTG 1 cut(s) 451
MspI CCGG 2 cut(s) 631, 689
NdeII GATC 6 cut(s) 61, 114, 205, 233, 588, 609
NlaIII CATG 2 cut(s) 181, 197
NmuCI GTSAC 1 cut(s) 421
NsbI TGCGCA 1 cut(s) 46
PaeR7I CTCGAG 1 cut(s) 467
PciSI GCTCTTC 1 cut(s) 406
PfeI GAWTC 1 cut(s) 640
PkrI GCNGC 3 cut(s) 259, 524, 583
PleI GAGTC 3 cut(s) 91, 211, 442
PpsI GAGTC 3 cut(s) 91, 211, 442
PstI CTGCAG 1 cut(s) 586
PsuI RGATCY 1 cut(s) 205
RsaI GTAC 1 cut(s) 568
RsaNI GTAC 1 cut(s) 567
RseI CAYNNNNRTG 1 cut(s) 451
SapI GCTCTTC 1 cut(s) 406
SaqAI TTAA 2 cut(s) 308, 663
SatI GCNGC 3 cut(s) 258, 523, 582
Sau3AI GATC 6 cut(s) 61, 114, 205, 233, 588, 609
SchI GAGTC 3 cut(s) 92, 211, 443
SfaNI GCATC 4 cut(s) 345, 501, 523, 543
SfcI CTRYAG 1 cut(s) 582
Sfr274I CTCGAG 1 cut(s) 467
SlaI CTCGAG 1 cut(s) 467
SmiMI CAYNNNNRTG 1 cut(s) 451
SmlI CTYRAG 4 cut(s) 284, 299, 467, 605
SmoI CTYRAG 4 cut(s) 284, 299, 467, 605
SsiI CCGC 1 cut(s) 556
SspI AATATT 1 cut(s) 667
StyI CCWWGG 1 cut(s) 461
TaaI ACNGT 2 cut(s) 68, 595
TaqI TCGA 5 cut(s) 60, 117, 167, 468, 612
TatI WGTACW 1 cut(s) 566
TfiI GAWTC 1 cut(s) 640
Tru1I TTAA 2 cut(s) 308, 663
Tru9I TTAA 2 cut(s) 308, 663
TscAI CASTG 2 cut(s) 71, 598
TseFI GTSAC 1 cut(s) 421
TseI GCWGC 3 cut(s) 257, 522, 581
Tsp45I GTSAC 1 cut(s) 421
TspRI CASTG 2 cut(s) 71, 598
XhoI CTCGAG 1 cut(s) 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.