AT1G76210

Arabidopsis protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015948
Physical Location & Seq
Reverse (-)
28594950 .. 28595996
1047 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G76210.1

Sequence Viewer

Length: 681 bp
ATGGCTCAGATTAACTTTGAGGGTTTGAGAGAGCTACACGACTGCGTAAACTATCTCCTCCATCACTGTCCGAAAACAAGAGAATCTCTGTCTCAACAAGGACAAGAGAAATGGACGGAACAAGTTTCAGAAGCTTCATTGAGGATGTTAGACATCTGTAACGTATCCAAAGATGTGATGACGCTCGTGAAACACAGCTTGCAAGATCTACAACTGACTCTACGTGGCAACGAATCATCTGATGTCAACGAGAAGATAGCTGCGTATAATCGGTATAAGAACAAGCTCAAGAAGGAGACACTGAAATGCTTAAACTGTTTGAAGAACATGAAAGGAAACGAAGGAAGAGTGGCCATGCCAATAGAACAGAACCTTCTGTTTGTCACAGAAGTTTTGAAGGAAGTGAGAAGAGTCGTTGTGACGATGGTTGAGTCTTTGTTCTCACTTGGTTGTATTCCTTGGCTAGAGAAGAGATCGAGCAAAGGGTCTTTGTCTTCGATCTTTTCCATTCGGTCTTCCTATTTGTTAGATGATGAATGGGACGAGACTGCGGTGCAAAGCGCGACTACGAGGTTGGAGGCGGCGGAGATTACTGTAGTGGAGCTTGAAATAGAGTTGGAATCTATTTTCCGGCGATTGATTCAGACGAGAGTTTCACTTCTTAATATTCTCACCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

226

Amino Acids

25.92

Weight (kDa)

6.15

Isoelectric Point (pI)

48.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 6 - 223 8e-58 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015948)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20520 AT1G76210
fragaria_vesca FvH4_2g37620
malus_domestica MD15G1003300.v1.1
prunus_persica Prupe.1G355700_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0304111
rosa_laevigata RLG00000011014
rosa_multiflora Rmu_ssc0000218.1_g000003
rosa_roxburghii Rroxscaffold_7G00164060
rosa_rugosa Rorug06G0327700
rosa_samantha Rh6AG441700 Rh6BG461100 Rh6CG453900 Rh6DG441100
rosa_wichuraiana Rw6G038280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 563
AciI CCGC 3 cut(s) 551, 581, 584
AcoI YGGCCR 1 cut(s) 351
AgsI TTSAA 3 cut(s) 322, 397, 608
AluBI AGCT 6 cut(s) 34, 134, 198, 260, 286, 604
AluI AGCT 6 cut(s) 34, 134, 198, 260, 286, 604
Alw26I GTCTC 3 cut(s) 96, 290, 539
AoxI GGCC 1 cut(s) 351
ApeKI GCWGC 1 cut(s) 260
AspLEI GCGC 1 cut(s) 563
AsuHPI GGTGA 1 cut(s) 664
BalI TGGCCA 1 cut(s) 353
BauI CACGAG 1 cut(s) 185
BbsI GAAGAC 2 cut(s) 486, 507
BbvI GCAGC 1 cut(s) 247
BccI CCATC 2 cut(s) 69, 418
BciVI GTATCC 1 cut(s) 175
BcoDI GTCTC 3 cut(s) 96, 290, 539
BfaI CTAG 2 cut(s) 464, 679
BfmI CTRYAG 1 cut(s) 594
BfuI GTATCC 1 cut(s) 175
BglII AGATCT 1 cut(s) 205
BisI GCNGC 2 cut(s) 261, 582
BlsI GCNGC 2 cut(s) 262, 583
BpiI GAAGAC 2 cut(s) 486, 507
BpuEI CTTGAG 1 cut(s) 272
BsaAI YACGTR 1 cut(s) 224
BsaJI CCNNGG 1 cut(s) 458
BseDI CCNNGG 1 cut(s) 458
BseGI GGATG 1 cut(s) 150
BseMII CTCAG 1 cut(s) 20
BseRI GAGGAG 1 cut(s) 47
BseXI GCAGC 1 cut(s) 247
Bsh1236I CGCG 1 cut(s) 563
BshFI GGCC 1 cut(s) 353
BsiSI CCGG 1 cut(s) 631
BslFI GGGAC 1 cut(s) 554
BsmAI GTCTC 3 cut(s) 96, 290, 539
BsmFI GGGAC 1 cut(s) 554
BsnI GGCC 1 cut(s) 353
Bsp143I GATC 3 cut(s) 205, 473, 498
BspACI CCGC 3 cut(s) 551, 581, 584
BspANI GGCC 1 cut(s) 353
BspCNI CTCAG 1 cut(s) 19
BspFNI CGCG 1 cut(s) 563
BssECI CCNNGG 1 cut(s) 458
BssMI GATC 3 cut(s) 205, 473, 498
BssSI CACGAG 1 cut(s) 185
BssT1I CCWWGG 1 cut(s) 458
Bst2BI CACGAG 1 cut(s) 185
Bst4CI ACNGT 3 cut(s) 68, 317, 595
Bst6I CTCTTC 3 cut(s) 340, 403, 464
BstBAI YACGTR 1 cut(s) 224
BstC8I GCNNGC 1 cut(s) 200
BstDEI CTNAG 1 cut(s) 6
BstF5I GGATG 1 cut(s) 150
BstFNI CGCG 1 cut(s) 563
BstHHI GCGC 1 cut(s) 563
BstKTI GATC 3 cut(s) 208, 476, 501
BstMAI GTCTC 3 cut(s) 96, 290, 539
BstMBI GATC 3 cut(s) 205, 473, 498
BstSFI CTRYAG 1 cut(s) 594
BstUI CGCG 1 cut(s) 563
BstV1I GCAGC 1 cut(s) 247
BstV2I GAAGAC 2 cut(s) 486, 507
BstX2I RGATCY 1 cut(s) 205
BstYI RGATCY 1 cut(s) 205
BsuI GTATCC 1 cut(s) 175
BsuRI GGCC 1 cut(s) 353
BtsCI GGATG 1 cut(s) 150
BtsIMutI CAGTG 2 cut(s) 64, 299
Cac8I GCNNGC 1 cut(s) 200
CfoI GCGC 1 cut(s) 563
CseI GACGC 1 cut(s) 190
CviAII CATG 2 cut(s) 328, 355
CviJI RGCY 9 cut(s) 5, 34, 134, 198, 260, 286, 353, 463, 604
CviKI_1 RGCY 9 cut(s) 5, 34, 134, 198, 260, 286, 353, 463, 604
DdeI CTNAG 1 cut(s) 6
DpnI GATC 3 cut(s) 207, 475, 500
DpnII GATC 3 cut(s) 205, 473, 498
EaeI YGGCCR 1 cut(s) 351
Eam1104I CTCTTC 3 cut(s) 340, 403, 464
EarI CTCTTC 3 cut(s) 340, 403, 464
EciI GGCGGA 1 cut(s) 599
Eco130I CCWWGG 1 cut(s) 458
EcoT14I CCWWGG 1 cut(s) 458
ErhI CCWWGG 1 cut(s) 458
FaeI CATG 2 cut(s) 331, 358
FaiI YATR 4 cut(s) 267, 276, 329, 356
FaqI GGGAC 1 cut(s) 554
FatI CATG 2 cut(s) 327, 354
Fnu4HI GCNGC 2 cut(s) 261, 582
FokI GGATG 1 cut(s) 157
Fsp4HI GCNGC 2 cut(s) 261, 582
FspBI CTAG 2 cut(s) 464, 679
GlaI GCGC 1 cut(s) 562
GluI GCNGC 2 cut(s) 261, 582
HaeIII GGCC 1 cut(s) 353
HapII CCGG 1 cut(s) 631
HgaI GACGC 1 cut(s) 190
HhaI GCGC 1 cut(s) 563
Hin1II CATG 2 cut(s) 331, 358
Hin6I GCGC 1 cut(s) 561
HinP1I GCGC 1 cut(s) 561
HincII GTYRAC 1 cut(s) 247
HindII GTYRAC 1 cut(s) 247
HindIII AAGCTT 1 cut(s) 132
HinfI GANTC 7 cut(s) 83, 217, 233, 411, 431, 620, 640
HpaII CCGG 1 cut(s) 631
HphI GGTGA 1 cut(s) 664
Hpy166II GTNNAC 2 cut(s) 49, 247
Hpy188I TCNGA 5 cut(s) 9, 72, 130, 241, 645
Hpy188III TCNNGA 2 cut(s) 187, 289
Hpy8I GTNNAC 2 cut(s) 49, 247
HpyAV CCTTC 4 cut(s) 286, 335, 383, 391
HpyCH4III ACNGT 3 cut(s) 68, 317, 595
HpyCH4IV ACGT 2 cut(s) 162, 223
HpyCH4V TGCA 2 cut(s) 202, 556
HpyF3I CTNAG 1 cut(s) 6
HpySE526I ACGT 2 cut(s) 162, 223
Hsp92II CATG 2 cut(s) 331, 358
HspAI GCGC 1 cut(s) 561
Kzo9I GATC 3 cut(s) 205, 473, 498
LmnI GCTCC 1 cut(s) 601
LpnPI CCDG 1 cut(s) 644
Lsp1109I GCAGC 1 cut(s) 247
MaeI CTAG 2 cut(s) 464, 679
MaeII ACGT 2 cut(s) 162, 223
MaeIII GTNAC 3 cut(s) 158, 382, 418
MalI GATC 3 cut(s) 207, 475, 500
MboI GATC 3 cut(s) 205, 473, 498
MboII GAAGA 7 cut(s) 265, 334, 357, 420, 481, 486, 507
MflI RGATCY 1 cut(s) 205
MlsI TGGCCA 1 cut(s) 353
MluNI TGGCCA 1 cut(s) 353
MlyI GAGTC 3 cut(s) 211, 420, 440
MmeI TCCRAC 2 cut(s) 555, 597
MnlI CCTC 5 cut(s) 13, 68, 135, 564, 571
Mox20I TGGCCA 1 cut(s) 353
MscI TGGCCA 1 cut(s) 353
MseI TTAA 3 cut(s) 12, 311, 663
MslI CAYNNNNRTG 1 cut(s) 304
Msp20I TGGCCA 1 cut(s) 353
MspI CCGG 1 cut(s) 631
MvnI CGCG 1 cut(s) 563
NdeII GATC 3 cut(s) 205, 473, 498
NlaIII CATG 2 cut(s) 331, 358
NmuCI GTSAC 2 cut(s) 382, 418
PfeI GAWTC 4 cut(s) 83, 233, 620, 640
PkrI GCNGC 2 cut(s) 262, 583
PleI GAGTC 3 cut(s) 211, 419, 439
PpsI GAGTC 3 cut(s) 211, 419, 439
Ppu21I YACGTR 1 cut(s) 224
PsuI RGATCY 1 cut(s) 205
RseI CAYNNNNRTG 1 cut(s) 304
SaqAI TTAA 3 cut(s) 12, 311, 663
SatI GCNGC 2 cut(s) 261, 582
Sau3AI GATC 3 cut(s) 205, 473, 498
SchI GAGTC 3 cut(s) 211, 420, 440
SfcI CTRYAG 1 cut(s) 594
SmiMI CAYNNNNRTG 1 cut(s) 304
SmlI CTYRAG 1 cut(s) 287
SmoI CTYRAG 1 cut(s) 287
SsiI CCGC 3 cut(s) 551, 581, 584
SspI AATATT 1 cut(s) 667
SspMI CTAG 2 cut(s) 464, 679
StyI CCWWGG 1 cut(s) 458
TaaI ACNGT 3 cut(s) 68, 317, 595
TaiI ACGT 2 cut(s) 165, 226
TaqI TCGA 2 cut(s) 476, 497
TaqII GACCGA 1 cut(s) 501
TauI GCSGC 1 cut(s) 584
TfiI GAWTC 4 cut(s) 83, 233, 620, 640
Tru1I TTAA 3 cut(s) 12, 311, 663
Tru9I TTAA 3 cut(s) 12, 311, 663
TscAI CASTG 2 cut(s) 71, 306
TseFI GTSAC 2 cut(s) 382, 418
TseI GCWGC 1 cut(s) 260
Tsp45I GTSAC 2 cut(s) 382, 418
TspDTI ATGAA 3 cut(s) 126, 344, 549
TspGWI ACGGA 1 cut(s) 131
TspRI CASTG 2 cut(s) 71, 306
XspI CTAG 2 cut(s) 464, 679
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.