MD15G1003300.v1.1

Arabidopsis protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0015948
Physical Location & Seq
Forward (+)
198492 .. 199199
708 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1003300.v1.1.491

Sequence Viewer

Length: 708 bp
ATGGCCATGGCATGCCCAAATTTTGAAGCTCTCAGAGACCTACACAACTCTGCCAATAACCTTCTCCACTCCCCGGTGATCCAACAAGCTCTCATCAACGACATCGAACAGGAGAAATGGGTTCATCAAGTGTCAGAAGCGTCTCTAAGAATGCTGGATGTGTGCGGCATTTCCAAAGACGTTCTTTTGGTCGTGAAAGAACATCTCCAAGACCTTCAATCCATGTTGCGCCGAGGAAGCAGCAGCGGAGAAGCGGACAAAAGTAACAGGATTGCAGCCTACAACTGCTACAGGAAGAAGCTAAAGAAGGAGACGCTCAAGTGCTTGAAATCTCTCAAAGGAATAAGGAACAAGTCCAATACTAATTCTTCACAAGTATATACGGACCACAACCTTATGGTAGTTGTAGACGTGCTCAGTCAAGTGAGGGCGACTTCCGTTTCAATTGTGGAGACTCTTTTGTCCCTGATTTCCGTACCATGGCTGGAGCAGAAATCATCGGCTTCCTTCCAGTTCATGTCCAAGTTTATGCGTGTGAGTGGCCGCCAACGAGTGTACGATGCATGCGATGCGACGGCGCTTCAAAGTGCGAACAAAAGATTGGACGCTGTCGAGATTGCCATTCAAGACCTTGAAGCTGAGTTAGACTGCATGTTTAGACGTTTGATTGACACCAGAGTTGCCCTTCTCAATATACTTAACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

236

Amino Acids

26.48

Weight (kDa)

8.72

Isoelectric Point (pI)

51.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 8 - 232 1.2e-65 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015948)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20520 AT1G76210
fragaria_vesca FvH4_2g37620
malus_domestica MD15G1003300.v1.1
prunus_persica Prupe.1G355700_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0304111
rosa_laevigata RLG00000011014
rosa_multiflora Rmu_ssc0000218.1_g000003
rosa_roxburghii Rroxscaffold_7G00164060
rosa_rugosa Rorug06G0327700
rosa_samantha Rh6AG441700 Rh6BG461100 Rh6CG453900 Rh6DG441100
rosa_wichuraiana Rw6G038280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 460
AccI GTMKAC 1 cut(s) 408
AciI CCGC 4 cut(s) 165, 246, 254, 544
AclWI GGATC 1 cut(s) 73
AcoI YGGCCR 2 cut(s) 3, 541
AcsI RAATTY 1 cut(s) 19
AfaI GTAC 2 cut(s) 477, 557
AfiI CCNNNNNNNGG 2 cut(s) 73, 480
AgsI TTSAA 7 cut(s) 26, 218, 328, 444, 584, 626, 635
AjiI CACGTC 1 cut(s) 412
AjuI GAANNNNNNNTTGG 2 cut(s) 584, 616
AluBI AGCT 4 cut(s) 29, 89, 301, 638
AluI AGCT 4 cut(s) 29, 89, 301, 638
Alw21I GWGCWC 1 cut(s) 417
Alw26I GTCTC 4 cut(s) 30, 147, 305, 446
AlwI GGATC 1 cut(s) 73
AoxI GGCC 2 cut(s) 3, 541
ApeKI GCWGC 3 cut(s) 240, 243, 275
ApoI RAATTY 1 cut(s) 19
AspLEI GCGC 2 cut(s) 231, 580
AspS9I GGNCC 1 cut(s) 385
AsuC2I CCSGG 1 cut(s) 74
AsuHPI GGTGA 1 cut(s) 88
AvaII GGWCC 1 cut(s) 385
BalI TGGCCA 1 cut(s) 5
Bbv12I GWGCWC 1 cut(s) 417
BbvI GCAGC 3 cut(s) 252, 255, 287
BceAI ACGGC 1 cut(s) 591
BcnI CCSGG 1 cut(s) 74
BcoDI GTCTC 4 cut(s) 30, 147, 305, 446
BfmI CTRYAG 1 cut(s) 289
BfoI RGCGCY 1 cut(s) 581
BisI GCNGC 5 cut(s) 166, 241, 244, 276, 544
BlsI GCNGC 5 cut(s) 167, 242, 245, 277, 545
Bme1390I CCNGG 1 cut(s) 74
Bme18I GGWCC 1 cut(s) 385
BmgBI CACGTC 1 cut(s) 412
BmgT120I GGNCC 1 cut(s) 385
BmrFI CCNGG 1 cut(s) 74
BmsI GCATC 2 cut(s) 550, 559
BpmI CTGGAG 1 cut(s) 506
BpuEI CTTGAG 1 cut(s) 302
BpuMI CCSGG 1 cut(s) 74
BsaI GGTCTC 1 cut(s) 30
BsaJI CCNNGG 4 cut(s) 6, 72, 232, 479
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 480
Bse1I ACTGG 1 cut(s) 511
BseDI CCNNGG 4 cut(s) 6, 72, 232, 479
BseGI GGATG 1 cut(s) 163
BseLI CCNNNNNNNGG 2 cut(s) 73, 480
BseMII CTCAG 3 cut(s) 46, 430, 630
BseNI ACTGG 1 cut(s) 511
BseXI GCAGC 3 cut(s) 252, 255, 287
BshFI GGCC 2 cut(s) 5, 543
BsiHKAI GWGCWC 1 cut(s) 417
BsiSI CCGG 1 cut(s) 74
BslFI GGGAC 1 cut(s) 448
BslI CCNNNNNNNGG 2 cut(s) 73, 480
BsmAI GTCTC 4 cut(s) 30, 147, 305, 446
BsmBI CGTCTC 2 cut(s) 147, 305
BsmFI GGGAC 1 cut(s) 448
BsmI GAATGC 1 cut(s) 156
BsnI GGCC 2 cut(s) 5, 543
Bso31I GGTCTC 1 cut(s) 30
Bsp1286I GDGCHC 1 cut(s) 417
Bsp143I GATC 1 cut(s) 78
Bsp19I CCATGG 2 cut(s) 6, 479
BspACI CCGC 4 cut(s) 165, 246, 254, 544
BspANI GGCC 2 cut(s) 5, 543
BspCNI CTCAG 3 cut(s) 45, 429, 631
BspPI GGATC 1 cut(s) 73
BspTNI GGTCTC 1 cut(s) 30
BsrI ACTGG 1 cut(s) 511
BssECI CCNNGG 4 cut(s) 6, 72, 232, 479
BssMI GATC 1 cut(s) 78
BssT1I CCWWGG 2 cut(s) 6, 479
BstAPI GCANNNNNTGC 1 cut(s) 569
BstC8I GCNNGC 2 cut(s) 13, 565
BstDEI CTNAG 4 cut(s) 32, 146, 416, 639
BstDSI CCRYGG 2 cut(s) 6, 479
BstF5I GGATG 1 cut(s) 163
BstH2I RGCGCY 1 cut(s) 581
BstHHI GCGC 2 cut(s) 231, 580
BstKTI GATC 1 cut(s) 81
BstMAI GTCTC 4 cut(s) 30, 147, 305, 446
BstMBI GATC 1 cut(s) 78
BstMWI GCNNNNNNNGC 2 cut(s) 237, 569
BstNSI RCATGY 3 cut(s) 15, 567, 655
BstSCI CCNGG 1 cut(s) 72
BstSFI CTRYAG 1 cut(s) 289
BstV1I GCAGC 3 cut(s) 252, 255, 287
BsuRI GGCC 2 cut(s) 5, 543
BtgI CCRYGG 2 cut(s) 6, 479
BtgZI GCGATG 1 cut(s) 582
BtrI CACGTC 1 cut(s) 412
BtsCI GGATG 1 cut(s) 163
Cac8I GCNNGC 2 cut(s) 13, 565
CfoI GCGC 2 cut(s) 231, 580
Cfr13I GGNCC 1 cut(s) 385
CseI GACGC 3 cut(s) 129, 322, 614
Csp6I GTAC 2 cut(s) 476, 556
CviAII CATG 7 cut(s) 7, 12, 223, 480, 517, 564, 652
CviJI RGCY 9 cut(s) 5, 29, 89, 278, 301, 484, 503, 543, 638
CviKI_1 RGCY 9 cut(s) 5, 29, 89, 278, 301, 484, 503, 543, 638
CviQI GTAC 2 cut(s) 476, 556
DdeI CTNAG 4 cut(s) 32, 146, 416, 639
DpnI GATC 1 cut(s) 80
DpnII GATC 1 cut(s) 78
DrdI GACNNNNNNGTC 1 cut(s) 460
DseDI GACNNNNNNGTC 1 cut(s) 460
EaeI YGGCCR 2 cut(s) 3, 541
Eco130I CCWWGG 2 cut(s) 6, 479
Eco31I GGTCTC 1 cut(s) 30
Eco47I GGWCC 1 cut(s) 385
EcoT14I CCWWGG 2 cut(s) 6, 479
EcoT22I ATGCAT 1 cut(s) 565
ErhI CCWWGG 2 cut(s) 6, 479
Esp3I CGTCTC 2 cut(s) 147, 305
FaeI CATG 7 cut(s) 10, 15, 226, 483, 520, 567, 655
FalI AAGNNNNNCTT 2 cut(s) 168, 200
FaqI GGGAC 1 cut(s) 448
FatI CATG 7 cut(s) 6, 11, 222, 479, 516, 563, 651
FblI GTMKAC 1 cut(s) 408
Fnu4HI GCNGC 5 cut(s) 166, 241, 244, 276, 544
FokI GGATG 1 cut(s) 170
Fsp4HI GCNGC 5 cut(s) 166, 241, 244, 276, 544
GlaI GCGC 2 cut(s) 230, 579
GluI GCNGC 5 cut(s) 166, 241, 244, 276, 544
GsuI CTGGAG 1 cut(s) 506
HaeII RGCGCY 1 cut(s) 581
HaeIII GGCC 2 cut(s) 5, 543
HapII CCGG 1 cut(s) 74
HgaI GACGC 3 cut(s) 129, 322, 614
HhaI GCGC 2 cut(s) 231, 580
Hin1II CATG 7 cut(s) 10, 15, 226, 483, 520, 567, 655
Hin6I GCGC 2 cut(s) 229, 578
HinP1I GCGC 2 cut(s) 229, 578
HinfI GANTC 1 cut(s) 454
HpaII CCGG 1 cut(s) 74
HphI GGTGA 1 cut(s) 88
Hpy166II GTNNAC 2 cut(s) 409, 556
Hpy188I TCNGA 2 cut(s) 35, 136
Hpy188III TCNNGA 3 cut(s) 193, 613, 626
Hpy8I GTNNAC 2 cut(s) 409, 556
Hpy99I CGWCG 1 cut(s) 577
HpyAV CCTTC 5 cut(s) 71, 224, 301, 517, 695
HpyCH4IV ACGT 3 cut(s) 180, 411, 661
HpyCH4V TGCA 3 cut(s) 275, 563, 651
HpyF10VI GCNNNNNNNGC 2 cut(s) 237, 569
HpyF3I CTNAG 4 cut(s) 32, 146, 416, 639
HpySE526I ACGT 3 cut(s) 180, 411, 661
Hsp92II CATG 7 cut(s) 10, 15, 226, 483, 520, 567, 655
HspAI GCGC 2 cut(s) 229, 578
Kzo9I GATC 1 cut(s) 78
LmnI GCTCC 1 cut(s) 487
LpnPI CCDG 9 cut(s) 87, 95, 140, 253, 277, 470, 479, 524, 688
Lsp1109I GCAGC 3 cut(s) 252, 255, 287
LweI GCATC 2 cut(s) 550, 559
MaeII ACGT 3 cut(s) 180, 411, 661
MaeIII GTNAC 1 cut(s) 263
MalI GATC 1 cut(s) 80
MboI GATC 1 cut(s) 78
MboII GAAGA 2 cut(s) 307, 360
MfeI CAATTG 1 cut(s) 444
MhlI GDGCHC 1 cut(s) 417
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 19, 364, 444, 703
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 448
MmeI TCCRAC 1 cut(s) 106
MnlI CCTC 2 cut(s) 227, 420
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 565
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 699, 706
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 246
MspI CCGG 1 cut(s) 74
MspR9I CCNGG 1 cut(s) 74
MunI CAATTG 1 cut(s) 444
Mva1269I GAATGC 1 cut(s) 156
MwoI GCNNNNNNNGC 2 cut(s) 237, 569
NciI CCSGG 1 cut(s) 74
NcoI CCATGG 2 cut(s) 6, 479
NdeII GATC 1 cut(s) 78
NlaIII CATG 7 cut(s) 10, 15, 226, 483, 520, 567, 655
NmeAIII GCCGAG 1 cut(s) 257
NsiI ATGCAT 1 cut(s) 565
NspI RCATGY 3 cut(s) 15, 567, 655
PaeI GCATGC 2 cut(s) 15, 567
PcsI WCGNNNNNNNCGW 1 cut(s) 564
PctI GAATGC 1 cut(s) 156
PflFI GACNNNGTC 1 cut(s) 608
PkrI GCNGC 5 cut(s) 167, 242, 245, 277, 545
PleI GAGTC 1 cut(s) 448
PpsI GAGTC 1 cut(s) 448
PspPI GGNCC 1 cut(s) 385
PsyI GACNNNGTC 1 cut(s) 608
RsaI GTAC 2 cut(s) 477, 557
RsaNI GTAC 2 cut(s) 476, 556
SaqAI TTAA 2 cut(s) 699, 706
SatI GCNGC 5 cut(s) 166, 241, 244, 276, 544
Sau3AI GATC 1 cut(s) 78
Sau96I GGNCC 1 cut(s) 385
SchI GAGTC 1 cut(s) 448
ScrFI CCNGG 1 cut(s) 74
SduI GDGCHC 1 cut(s) 417
SfaNI GCATC 2 cut(s) 550, 559
SfcI CTRYAG 1 cut(s) 289
SinI GGWCC 1 cut(s) 385
SmlI CTYRAG 1 cut(s) 317
SmoI CTYRAG 1 cut(s) 317
SphI GCATGC 2 cut(s) 15, 567
Sse9I AATT 4 cut(s) 19, 364, 444, 703
SsiI CCGC 4 cut(s) 165, 246, 254, 544
StyD4I CCNGG 1 cut(s) 72
StyI CCWWGG 2 cut(s) 6, 479
TaiI ACGT 3 cut(s) 183, 414, 664
TaqI TCGA 2 cut(s) 105, 612
TasI AATT 4 cut(s) 19, 364, 444, 703
TauI GCSGC 2 cut(s) 168, 546
Tru1I TTAA 2 cut(s) 699, 706
Tru9I TTAA 2 cut(s) 699, 706
TseI GCWGC 3 cut(s) 240, 243, 275
TspDTI ATGAA 2 cut(s) 113, 505
TspGWI ACGGA 3 cut(s) 398, 427, 463
Tth111I GACNNNGTC 1 cut(s) 608
VpaK11BI GGWCC 1 cut(s) 385
XapI RAATTY 1 cut(s) 19
XceI RCATGY 3 cut(s) 15, 567, 655
XmiI GTMKAC 1 cut(s) 408
Zsp2I ATGCAT 1 cut(s) 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.