FvH4_2g37620

Arabidopsis protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0015948
Physical Location & Seq
Forward (+)
27359855 .. 27360580
726 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g37620.t1

Sequence Viewer

Length: 726 bp
ATGGCTGGCCCGAACTTTGAAGCTCTGAGAAATTTGCACAACTCTGCCAATGATCTTCTCCACTCTCCTATCATTCAACAAGCTCTGGTTCGCAACAGTCAAGAAAAATGGGTTCATGAGGTTTCAGAAGCATCTCTTAGACTGTTGGATGTGTGCAGCATTTCGAAAGATGTTCTTCTTCTTGTGAAAGAGCATCTGCAGGACCTGCAGTTCACTTTACGCAGAGTGAACAGCTCAAGTGAAGAAGATATTGGGAGCAAAATGACGGCCTACAATTTCTATAGGAACAAGTTGAAGAAGGAGACCCTCAAGTGCTTGAGTTCTTTGAAAGGCCGCAGCCGTCCGATGAAGAAGAATGCCTCCATCGTTAGCTTGGAGCTTTGCCCTATAGACCAGAACCTTACGCTTGTTGTGGATGTGCTAAGACAAGTTAGGGTCACCACAGTTTCAATTGTGGAGACTTTGCTGTCCCTCATTTCCATACCCTGGCTGGATGGGAAATCAACTAGTAGAAGTAGCACTGCTTCTTTCAGATTCATGTCCAAGTTAATGTGTGGGAGGAGCCAAAAAGTACATGATCTATGCGATGCAACAGCGCTTCAGAGTGCAAATGCAAGGTTGGATGCTGTGGAGATTGCCATTGAAGATCTTCAAGTTGAGTTGGAGTGCATGTTCAGGCGCTTGATCGACACCAGAGTTGCACTTCTAAACATCCTTACCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

242

Amino Acids

27.15

Weight (kDa)

8.75

Isoelectric Point (pI)

57.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 6 - 238 2.6e-62 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015948)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20520 AT1G76210
fragaria_vesca FvH4_2g37620
malus_domestica MD15G1003300.v1.1
prunus_persica Prupe.1G355700_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0304111
rosa_laevigata RLG00000011014
rosa_multiflora Rmu_ssc0000218.1_g000003
rosa_roxburghii Rroxscaffold_7G00164060
rosa_rugosa Rorug06G0327700
rosa_samantha Rh6AG441700 Rh6BG461100 Rh6CG453900 Rh6DG441100
rosa_wichuraiana Rw6G038280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 466
Acc36I ACCTGC 1 cut(s) 213
AccB7I CCANNNNNTGG 1 cut(s) 486
AciI CCGC 1 cut(s) 334
AcsI RAATTY 1 cut(s) 31
AcuI CTGAAG 1 cut(s) 584
AfaI GTAC 1 cut(s) 573
AfeI AGCGCT 1 cut(s) 597
AfiI CCNNNNNNNGG 1 cut(s) 486
AgsI TTSAA 7 cut(s) 20, 77, 295, 328, 450, 644, 653
AhlI ACTAGT 1 cut(s) 506
AjnI CCWGG 1 cut(s) 485
AjuI GAANNNNNNNTTGG 2 cut(s) 234, 266
AloI GAACNNNNNNTCC 4 cut(s) 194, 226, 656, 688
AluBI AGCT 5 cut(s) 23, 83, 234, 372, 379
AluI AGCT 5 cut(s) 23, 83, 234, 372, 379
Alw26I GTCTC 2 cut(s) 296, 452
AlwNI CAGNNNCTG 1 cut(s) 205
Aor51HI AGCGCT 1 cut(s) 597
AoxI GGCC 3 cut(s) 7, 267, 331
ApeKI GCWGC 2 cut(s) 156, 336
ApoI RAATTY 1 cut(s) 31
Asp700I GAANNNNTTC 1 cut(s) 648
AspLEI GCGC 2 cut(s) 598, 681
AspS9I GGNCC 2 cut(s) 8, 202
AsuHPI GGTGA 1 cut(s) 430
AsuII TTCGAA 1 cut(s) 164
AvaII GGWCC 1 cut(s) 202
BarI GAAGNNNNNNTAC 2 cut(s) 508, 540
BbvI GCAGC 2 cut(s) 168, 348
BccI CCATC 2 cut(s) 371, 488
BceAI ACGGC 2 cut(s) 282, 324
BciT130I CCWGG 1 cut(s) 487
BcoDI GTCTC 2 cut(s) 296, 452
BcuI ACTAGT 1 cut(s) 506
BfaI CTAG 2 cut(s) 507, 724
BfmI CTRYAG 4 cut(s) 197, 206, 280, 387
BfoI RGCGCY 2 cut(s) 599, 682
BfuAI ACCTGC 1 cut(s) 213
BglII AGATCT 1 cut(s) 646
BisI GCNGC 3 cut(s) 157, 334, 337
BlsI GCNGC 3 cut(s) 158, 335, 338
Bme1390I CCNGG 1 cut(s) 487
Bme18I GGWCC 1 cut(s) 202
BmgT120I GGNCC 2 cut(s) 8, 202
BmiI GGNNCC 1 cut(s) 563
BmrFI CCNGG 1 cut(s) 487
BmsI GCATC 4 cut(s) 140, 202, 577, 613
Bpu14I TTCGAA 1 cut(s) 164
BpuEI CTTGAG 3 cut(s) 220, 293, 337
BsaI GGTCTC 1 cut(s) 296
BsaJI CCNNGG 1 cut(s) 485
BsaXI ACNNNNNCTCC 2 cut(s) 656, 686
Bsc4I CCNNNNNNNGG 1 cut(s) 486
BseBI CCWGG 1 cut(s) 487
BseDI CCNNGG 1 cut(s) 485
BseGI GGATG 5 cut(s) 154, 421, 499, 628, 711
BseLI CCNNNNNNNGG 1 cut(s) 486
BseMII CTCAG 1 cut(s) 17
BseRI GAGGAG 1 cut(s) 574
BseXI GCAGC 2 cut(s) 168, 348
BsgI GTGCAG 1 cut(s) 175
BshFI GGCC 3 cut(s) 9, 269, 333
BslFI GGGAC 1 cut(s) 454
BslI CCNNNNNNNGG 1 cut(s) 486
BsmAI GTCTC 2 cut(s) 296, 452
BsmFI GGGAC 1 cut(s) 454
BsmI GAATGC 1 cut(s) 361
BsnI GGCC 3 cut(s) 9, 269, 333
Bso31I GGTCTC 1 cut(s) 296
Bsp119I TTCGAA 1 cut(s) 164
Bsp143I GATC 4 cut(s) 52, 577, 646, 684
BspACI CCGC 1 cut(s) 334
BspANI GGCC 3 cut(s) 9, 269, 333
BspCNI CTCAG 1 cut(s) 18
BspHI TCATGA 1 cut(s) 115
BspLI GGNNCC 1 cut(s) 563
BspMAI CTGCAG 2 cut(s) 201, 210
BspMI ACCTGC 1 cut(s) 213
BspT104I TTCGAA 1 cut(s) 164
BspTNI GGTCTC 1 cut(s) 296
BssECI CCNNGG 1 cut(s) 485
BssMI GATC 4 cut(s) 52, 577, 646, 684
Bst2UI CCWGG 1 cut(s) 487
Bst4CI ACNGT 3 cut(s) 98, 144, 445
BstAPI GCANNNNNTGC 1 cut(s) 205
BstBI TTCGAA 1 cut(s) 164
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 3 cut(s) 26, 137, 422
BstEII GGTNACC 1 cut(s) 436
BstF5I GGATG 5 cut(s) 154, 421, 499, 628, 711
BstH2I RGCGCY 2 cut(s) 599, 682
BstHHI GCGC 2 cut(s) 598, 681
BstKTI GATC 4 cut(s) 55, 580, 649, 687
BstMAI GTCTC 2 cut(s) 296, 452
BstMBI GATC 4 cut(s) 52, 577, 646, 684
BstMWI GCNNNNNNNGC 1 cut(s) 205
BstNI CCWGG 1 cut(s) 487
BstNSI RCATGY 1 cut(s) 673
BstPI GGTNACC 1 cut(s) 436
BstSCI CCNGG 1 cut(s) 485
BstSFI CTRYAG 4 cut(s) 197, 206, 280, 387
BstV1I GCAGC 2 cut(s) 168, 348
BstX2I RGATCY 1 cut(s) 646
BstYI RGATCY 1 cut(s) 646
BsuRI GGCC 3 cut(s) 9, 269, 333
BtgZI GCGATG 1 cut(s) 600
BtsCI GGATG 5 cut(s) 154, 421, 499, 628, 711
BtsI GCAGTG 1 cut(s) 519
BtsIMutI CAGTG 1 cut(s) 519
BveI ACCTGC 1 cut(s) 213
Cac8I GCNNGC 1 cut(s) 7
CaiI CAGNNNCTG 1 cut(s) 205
CciI TCATGA 1 cut(s) 115
CfoI GCGC 2 cut(s) 598, 681
Cfr13I GGNCC 2 cut(s) 8, 202
Csp6I GTAC 1 cut(s) 572
CviAII CATG 4 cut(s) 116, 538, 575, 670
CviQI GTAC 1 cut(s) 572
DdeI CTNAG 3 cut(s) 26, 137, 422
DpnI GATC 4 cut(s) 54, 579, 648, 686
DpnII GATC 4 cut(s) 52, 577, 646, 684
DrdI GACNNNNNNGTC 1 cut(s) 466
DseDI GACNNNNNNGTC 1 cut(s) 466
Eco31I GGTCTC 1 cut(s) 296
Eco47I GGWCC 1 cut(s) 202
Eco47III AGCGCT 1 cut(s) 597
Eco57I CTGAAG 1 cut(s) 584
Eco91I GGTNACC 1 cut(s) 436
EcoO109I RGGNCCY 1 cut(s) 202
EcoO65I GGTNACC 1 cut(s) 436
EcoRII CCWGG 1 cut(s) 485
FaeI CATG 4 cut(s) 119, 541, 578, 673
FaiI YATR 8 cut(s) 117, 282, 389, 482, 539, 576, 583, 671
FalI AAGNNNNNCTT 4 cut(s) 120, 152, 159, 191
FaqI GGGAC 1 cut(s) 454
FatI CATG 4 cut(s) 115, 537, 574, 669
Fnu4HI GCNGC 3 cut(s) 157, 334, 337
FokI GGATG 5 cut(s) 161, 428, 506, 635, 698
Fsp4HI GCNGC 3 cut(s) 157, 334, 337
FspBI CTAG 2 cut(s) 507, 724
GlaI GCGC 2 cut(s) 597, 680
GluI GCNGC 3 cut(s) 157, 334, 337
HaeII RGCGCY 2 cut(s) 599, 682
HaeIII GGCC 3 cut(s) 9, 269, 333
HhaI GCGC 2 cut(s) 598, 681
Hin1II CATG 4 cut(s) 119, 541, 578, 673
Hin6I GCGC 2 cut(s) 596, 679
HinP1I GCGC 2 cut(s) 596, 679
HinfI GANTC 1 cut(s) 534
HphI GGTGA 1 cut(s) 430
Hpy166II GTNNAC 2 cut(s) 213, 229
Hpy188I TCNGA 5 cut(s) 27, 127, 345, 533, 603
Hpy188III TCNNGA 2 cut(s) 101, 116
Hpy8I GTNNAC 2 cut(s) 213, 229
HpyAV CCTTC 1 cut(s) 292
HpyCH4III ACNGT 3 cut(s) 98, 144, 445
HpyCH4V TGCA 9 cut(s) 37, 156, 199, 208, 590, 608, 614, 669, 701
HpyF10VI GCNNNNNNNGC 1 cut(s) 205
HpyF3I CTNAG 3 cut(s) 26, 137, 422
Hsp92II CATG 4 cut(s) 119, 541, 578, 673
HspAI GCGC 2 cut(s) 596, 679
Kzo9I GATC 4 cut(s) 52, 577, 646, 684
LmnI GCTCC 3 cut(s) 255, 376, 561
LpnPI CCDG 9 cut(s) 71, 185, 218, 407, 472, 476, 499, 661, 706
Lsp1109I GCAGC 2 cut(s) 168, 348
LweI GCATC 4 cut(s) 140, 202, 577, 613
MaeI CTAG 2 cut(s) 507, 724
MaeIII GTNAC 1 cut(s) 436
MalI GATC 4 cut(s) 54, 579, 648, 686
MboI GATC 4 cut(s) 52, 577, 646, 684
MfeI CAATTG 1 cut(s) 450
MflI RGATCY 1 cut(s) 646
MluCI AATT 3 cut(s) 31, 274, 450
MmeI TCCRAC 3 cut(s) 126, 600, 642
MnlI CCTC 5 cut(s) 112, 317, 370, 482, 552
MroXI GAANNNNTTC 1 cut(s) 648
MseI TTAA 1 cut(s) 548
MspR9I CCNGG 1 cut(s) 487
MunI CAATTG 1 cut(s) 450
Mva1269I GAATGC 1 cut(s) 361
MvaI CCWGG 1 cut(s) 487
MwoI GCNNNNNNNGC 1 cut(s) 205
NdeII GATC 4 cut(s) 52, 577, 646, 684
NlaIII CATG 4 cut(s) 119, 541, 578, 673
NlaIV GGNNCC 1 cut(s) 563
NmuCI GTSAC 1 cut(s) 436
NspI RCATGY 1 cut(s) 673
NspV TTCGAA 1 cut(s) 164
PagI TCATGA 1 cut(s) 115
PctI GAATGC 1 cut(s) 361
PdmI GAANNNNTTC 1 cut(s) 648
PfeI GAWTC 1 cut(s) 534
PflMI CCANNNNNTGG 1 cut(s) 486
PkrI GCNGC 3 cut(s) 158, 335, 338
PpuMI RGGWCCY 1 cut(s) 202
Psp5II RGGWCCY 1 cut(s) 202
Psp6I CCWGG 1 cut(s) 485
PspEI GGTNACC 1 cut(s) 436
PspGI CCWGG 1 cut(s) 485
PspN4I GGNNCC 1 cut(s) 563
PspPI GGNCC 2 cut(s) 8, 202
PspPPI RGGWCCY 1 cut(s) 202
PstI CTGCAG 2 cut(s) 201, 210
PstNI CAGNNNCTG 1 cut(s) 205
PsuI RGATCY 1 cut(s) 646
RsaI GTAC 1 cut(s) 573
RsaNI GTAC 1 cut(s) 572
SaqAI TTAA 1 cut(s) 548
SatI GCNGC 3 cut(s) 157, 334, 337
Sau3AI GATC 4 cut(s) 52, 577, 646, 684
Sau96I GGNCC 2 cut(s) 8, 202
ScrFI CCNGG 1 cut(s) 487
SetI ASST 9 cut(s) 25, 85, 123, 207, 236, 374, 381, 402, 620
SfaNI GCATC 4 cut(s) 140, 202, 577, 613
SfcI CTRYAG 4 cut(s) 197, 206, 280, 387
SfuI TTCGAA 1 cut(s) 164
SinI GGWCC 1 cut(s) 202
SmlI CTYRAG 3 cut(s) 235, 308, 316
SmoI CTYRAG 3 cut(s) 235, 308, 316
SpeI ACTAGT 1 cut(s) 506
Sse9I AATT 3 cut(s) 31, 274, 450
SsiI CCGC 1 cut(s) 334
SspMI CTAG 2 cut(s) 507, 724
StyD4I CCNGG 1 cut(s) 485
TaaI ACNGT 3 cut(s) 98, 144, 445
TaqI TCGA 2 cut(s) 164, 687
TasI AATT 3 cut(s) 31, 274, 450
TatI WGTACW 1 cut(s) 571
TauI GCSGC 1 cut(s) 336
TfiI GAWTC 1 cut(s) 534
Tru1I TTAA 1 cut(s) 548
Tru9I TTAA 1 cut(s) 548
TscAI CASTG 1 cut(s) 526
TseFI GTSAC 1 cut(s) 436
TseI GCWGC 2 cut(s) 156, 336
Tsp45I GTSAC 1 cut(s) 436
TspDTI ATGAA 3 cut(s) 104, 362, 526
TspRI CASTG 1 cut(s) 526
Van91I CCANNNNNTGG 1 cut(s) 486
VpaK11BI GGWCC 1 cut(s) 202
XapI RAATTY 1 cut(s) 31
XceI RCATGY 1 cut(s) 673
XcmI CCANNNNNNNNNTGG 2 cut(s) 370, 487
XmnI GAANNNNTTC 1 cut(s) 648
XspI CTAG 2 cut(s) 507, 724
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.