Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015254

Physical Location & Seq

Genomic Coordinates Forward (+)

7233654 .. 7235128

Gene Structure 1475 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G20816.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGAGACTTCTCTGAGATATGCTACTAATTCCAGGTCTCTGAAAATTCATGCCAAGGAGAAGTTTCCGGTGAACTCCAAAACTCGCCTGCAGCTTCATGGAGAGCTAGATACAGGAGCTGGAGTGCCAAGTTACTTCTGTGCAATGATAAGATACTTTTTTCATGAGGCTTCAACAAACCTTGGAGTTGGTTTGCATTATGATAAACGCGAAAAGCTTCGGTGTCTTGTACGTGGGAAAAAGAAGTTTCCTGTGATAACTGATGAGGTTGTAACCTTTAATATCAAAGGAAGATGTGATTTTGACCAGGACTTAGTTCAGAGGAACGCAAAAGGAGCTGCTGAATTTGATTGGAACATATGGAAGTTTCAGAAAGATCAGGATTTACGCCTCAGAATTGGCTACGAAATGTTTGAGAAGGTACCTTATATGCAGATTAGAGAAAACAATTGGACTTTTAACACGAACTTGAAAGGAAAATGGAATGTGAGGTATGATCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005253 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008308 GO:0008509 GO:0009507 GO:0009513 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0015075 GO:0015103 GO:0015267 GO:0015288 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0019867 GO:0022803 GO:0022829 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032879 GO:0034220 GO:0034425 GO:0034426 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0044070 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0051049 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0098588 GO:0098656 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

167

Amino Acids

19.78

Weight (kDa)

9.51

Isoelectric Point (pI)

36.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0015254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20816 AT1G76405 AT1G76405
fragaria_vesca	FvH4_5g25920
malus_domestica	MD06G1005500.v1.1
prunus_persica	Prupe.5G006800_v2.0.a1 Prupe.5G006800_v2.0.a1
pyrus_communis	pycom06g00510
rosa_chinensis	RchiOBHm_Chr7g0216421
rosa_laevigata	RLG00000002571
rosa_multiflora	Rmu_sc0038813.1_g000002
rosa_roxburghii	Rroxscaffold_3G00243250
rosa_rugosa	Rorug07G0160300
rosa_samantha	Rh7BG290800 Rh7DG300600
rosa_wichuraiana	Rw7G025440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	421
AccB1I	GGYRCC	1 cut(s)	421
AccII	CGCG	1 cut(s)	210
AcsI	RAATTY	2 cut(s)	45, 344
AfaI	GTAC	2 cut(s)	231, 423
AgsI	TTSAA	2 cut(s)	174, 472
AjnI	CCWGG	2 cut(s)	32, 306
AluBI	AGCT	5 cut(s)	94, 106, 119, 217, 338
AluI	AGCT	5 cut(s)	94, 106, 119, 217, 338
Alw26I	GTCTC	1 cut(s)	42
AlwNI	CAGNNNCTG	1 cut(s)	119
ApeKI	GCWGC	2 cut(s)	91, 338
ApoI	RAATTY	2 cut(s)	45, 344
Asp700I	GAANNNNTTC	1 cut(s)	216
Asp718I	GGTACC	1 cut(s)	421
AsuHPI	GGTGA	1 cut(s)	82
BanI	GGYRCC	1 cut(s)	421
BbvI	GCAGC	2 cut(s)	103, 325
BciT130I	CCWGG	2 cut(s)	34, 308
BcoDI	GTCTC	1 cut(s)	42
BfaI	CTAG	1 cut(s)	107
BfmI	CTRYAG	1 cut(s)	89
BisI	GCNGC	2 cut(s)	92, 339
BlsI	GCNGC	2 cut(s)	93, 340
Bme1390I	CCNGG	2 cut(s)	34, 308
BmiI	GGNNCC	1 cut(s)	423
BmrFI	CCNGG	2 cut(s)	34, 308
BpmI	CTGGAG	1 cut(s)	141
BsaAI	YACGTR	1 cut(s)	233
BsaI	GGTCTC	1 cut(s)	42
BsaJI	CCNNGG	2 cut(s)	54, 181
BsaWI	WCCGGW	1 cut(s)	67
BsaXI	ACNNNNNCTCC	2 cut(s)	108, 138
Bse3DI	GCAATG	1 cut(s)	150
BseBI	CCWGG	2 cut(s)	34, 308
BseDI	CCNNGG	2 cut(s)	54, 181
BseMI	GCAATG	1 cut(s)	150
BseMII	CTCAG	2 cut(s)	5, 406
BseXI	GCAGC	2 cut(s)	103, 325
Bsh1236I	CGCG	1 cut(s)	210
BshNI	GGYRCC	1 cut(s)	421
BsiSI	CCGG	1 cut(s)	68
BsmAI	GTCTC	1 cut(s)	42
Bso31I	GGTCTC	1 cut(s)	42
Bsp143I	GATC	2 cut(s)	376, 496
BspCNI	CTCAG	2 cut(s)	6, 405
BspFNI	CGCG	1 cut(s)	210
BspHI	TCATGA	1 cut(s)	163
BspLI	GGNNCC	1 cut(s)	423
BspMAI	CTGCAG	1 cut(s)	93
BspT107I	GGYRCC	1 cut(s)	421
BspTNI	GGTCTC	1 cut(s)	42
BsrDI	GCAATG	1 cut(s)	150
BssECI	CCNNGG	2 cut(s)	54, 181
BssMI	GATC	2 cut(s)	376, 496
BssT1I	CCWWGG	2 cut(s)	54, 181
Bst2UI	CCWGG	2 cut(s)	34, 308
BstBAI	YACGTR	1 cut(s)	233
BstC8I	GCNNGC	1 cut(s)	89
BstDEI	CTNAG	3 cut(s)	14, 313, 392
BstFNI	CGCG	1 cut(s)	210
BstKTI	GATC	2 cut(s)	379, 499
BstMAI	GTCTC	1 cut(s)	42
BstMBI	GATC	2 cut(s)	376, 496
BstMWI	GCNNNNNNNGC	1 cut(s)	335
BstNI	CCWGG	2 cut(s)	34, 308
BstSCI	CCNGG	2 cut(s)	32, 306
BstSFI	CTRYAG	1 cut(s)	89
BstUI	CGCG	1 cut(s)	210
BstV1I	GCAGC	2 cut(s)	103, 325
Cac8I	GCNNGC	1 cut(s)	89
CaiI	CAGNNNCTG	1 cut(s)	119
CciI	TCATGA	1 cut(s)	163
Csp6I	GTAC	2 cut(s)	230, 422
CviAII	CATG	3 cut(s)	50, 98, 164
CviJI	RGCY	7 cut(s)	94, 106, 119, 170, 217, 338, 402
CviKI_1	RGCY	7 cut(s)	94, 106, 119, 170, 217, 338, 402
CviQI	GTAC	2 cut(s)	230, 422
DdeI	CTNAG	3 cut(s)	14, 313, 392
DpnI	GATC	2 cut(s)	378, 498
DpnII	GATC	2 cut(s)	376, 496
Eco130I	CCWWGG	2 cut(s)	54, 181
Eco31I	GGTCTC	1 cut(s)	42
EcoRII	CCWGG	2 cut(s)	32, 306
EcoT14I	CCWWGG	2 cut(s)	54, 181
ErhI	CCWWGG	2 cut(s)	54, 181
FaeI	CATG	3 cut(s)	53, 101, 167
FatI	CATG	3 cut(s)	49, 97, 163
FauNDI	CATATG	1 cut(s)	359
Fnu4HI	GCNGC	2 cut(s)	92, 339
Fsp4HI	GCNGC	2 cut(s)	92, 339
FspBI	CTAG	1 cut(s)	107
GluI	GCNGC	2 cut(s)	92, 339
GsuI	CTGGAG	1 cut(s)	141
HapII	CCGG	1 cut(s)	68
Hin1II	CATG	3 cut(s)	53, 101, 167
HindIII	AAGCTT	1 cut(s)	215
HpaII	CCGG	1 cut(s)	68
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	5 cut(s)	15, 42, 321, 372, 395
Hpy188III	TCNNGA	2 cut(s)	164, 380
Hpy8I	GTNNAC	1 cut(s)	73
HpyAV	CCTTC	1 cut(s)	412
HpyCH4IV	ACGT	1 cut(s)	232
HpyCH4V	TGCA	4 cut(s)	91, 143, 196, 433
HpyF10VI	GCNNNNNNNGC	1 cut(s)	335
HpyF3I	CTNAG	3 cut(s)	14, 313, 392
HpySE526I	ACGT	1 cut(s)	232
Hsp92II	CATG	3 cut(s)	53, 101, 167
KpnI	GGTACC	1 cut(s)	425
Kzo9I	GATC	2 cut(s)	376, 496
LmnI	GCTCC	2 cut(s)	116, 335
Lsp1109I	GCAGC	2 cut(s)	103, 325
MaeI	CTAG	1 cut(s)	107
MaeII	ACGT	1 cut(s)	232
MaeIII	GTNAC	2 cut(s)	131, 271
MalI	GATC	2 cut(s)	378, 498
MboI	GATC	2 cut(s)	376, 496
MboII	GAAGA	1 cut(s)	303
MfeI	CAATTG	1 cut(s)	448
MluCI	AATT	5 cut(s)	28, 45, 344, 396, 448
MnlI	CCTC	5 cut(s)	160, 259, 315, 401, 483
MroXI	GAANNNNTTC	1 cut(s)	216
MseI	TTAA	2 cut(s)	279, 459
MspI	CCGG	1 cut(s)	68
MspR9I	CCNGG	2 cut(s)	34, 308
MunI	CAATTG	1 cut(s)	448
MvaI	CCWGG	2 cut(s)	34, 308
MvnI	CGCG	1 cut(s)	210
MwoI	GCNNNNNNNGC	1 cut(s)	335
NdeI	CATATG	1 cut(s)	359
NdeII	GATC	2 cut(s)	376, 496
NlaIII	CATG	3 cut(s)	53, 101, 167
NlaIV	GGNNCC	1 cut(s)	423
PagI	TCATGA	1 cut(s)	163
PdmI	GAANNNNTTC	1 cut(s)	216
PkrI	GCNGC	2 cut(s)	93, 340
Ppu21I	YACGTR	1 cut(s)	233
Psp6I	CCWGG	2 cut(s)	32, 306
PspGI	CCWGG	2 cut(s)	32, 306
PspN4I	GGNNCC	1 cut(s)	423
PstI	CTGCAG	1 cut(s)	93
PstNI	CAGNNNCTG	1 cut(s)	119
RsaI	GTAC	2 cut(s)	231, 423
RsaNI	GTAC	2 cut(s)	230, 422
SaqAI	TTAA	2 cut(s)	279, 459
SatI	GCNGC	2 cut(s)	92, 339
Sau3AI	GATC	2 cut(s)	376, 496
ScrFI	CCNGG	2 cut(s)	34, 308
SfcI	CTRYAG	1 cut(s)	89
Sse9I	AATT	5 cut(s)	28, 45, 344, 396, 448
SspMI	CTAG	1 cut(s)	107
StyD4I	CCNGG	2 cut(s)	32, 306
StyI	CCWWGG	2 cut(s)	54, 181
TaiI	ACGT	1 cut(s)	235
TasI	AATT	5 cut(s)	28, 45, 344, 396, 448
Tru1I	TTAA	2 cut(s)	279, 459
Tru9I	TTAA	2 cut(s)	279, 459
TseI	GCWGC	2 cut(s)	91, 338
TspDTI	ATGAA	3 cut(s)	38, 86, 152
XapI	RAATTY	2 cut(s)	45, 344
XmnI	GAANNNNTTC	1 cut(s)	216
XspI	CTAG	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.