Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0015254

Physical Location & Seq

Genomic Coordinates Reverse (-)

601730 .. 603590

Gene Structure 1861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1005500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGAGACCTCTCTGAGATATGGCGGCGATGCCAAAGCTTTGAGAATCCACGCCAAGCAGAAGCTCCCCCTCGATTCCAAAACCCACTTGCAGGTTCATGGAGAGCTAGATACTAGATTTGGAGTTCCAACATTTTTTAGAGCGGTAGTGAGGCGCTTCTACCCCGATTTTTCAGCAAGCCTTGGAGTGGGATTGCAATATGATAAGCGCGAGAAACTGCATTACACTGTCCGTGCGAAGAAGTCATTCCCTGTGACAACAGATGGCCTGTTCAGCTTCAATGTGAAGGGAAGATGTCATCTTGACAAAGAATTCAAAGAGAGAAACTCCACAGGAGCTGCTGAATTTTCGTGGTGCATTTTGAACTTTCAAAAGGACCAAGATGTCCGGCTCAAACTTGGTTATGACTTGTTGGACAAGGTTCCATATATGCAGATCAGGGAAAACAATTGGACATTCAATGCCAATGGTAATGGTAAATGGAATGTGAGGTTTGACTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005253 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008308 GO:0008509 GO:0009507 GO:0009513 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0015075 GO:0015103 GO:0015267 GO:0015288 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0019867 GO:0022803 GO:0022829 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032879 GO:0034220 GO:0034425 GO:0034426 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0044070 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0051049 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0098588 GO:0098656 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

168

Amino Acids

19.43

Weight (kDa)

9.63

Isoelectric Point (pI)

30.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20816 AT1G76405 AT1G76405
fragaria_vesca	FvH4_5g25920
malus_domestica	MD06G1005500.v1.1
prunus_persica	Prupe.5G006800_v2.0.a1 Prupe.5G006800_v2.0.a1
pyrus_communis	pycom06g00510
rosa_chinensis	RchiOBHm_Chr7g0216421
rosa_laevigata	RLG00000002571
rosa_multiflora	Rmu_sc0038813.1_g000002
rosa_roxburghii	Rroxscaffold_3G00243250
rosa_rugosa	Rorug07G0160300
rosa_samantha	Rh7BG290800 Rh7DG300600
rosa_wichuraiana	Rw7G025440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	383
Acc36I	ACCTGC	1 cut(s)	82
AccBSI	CCGCTC	1 cut(s)	143
AccII	CGCG	1 cut(s)	210
AciI	CCGC	2 cut(s)	24, 143
AcsI	RAATTY	2 cut(s)	311, 344
AfiI	CCNNNNNNNGG	2 cut(s)	91, 187
AgsI	TTSAA	5 cut(s)	280, 316, 364, 371, 460
AluBI	AGCT	5 cut(s)	38, 64, 106, 276, 338
AluI	AGCT	5 cut(s)	38, 64, 106, 276, 338
AlwNI	CAGNNNCTG	1 cut(s)	338
AoxI	GGCC	1 cut(s)	265
ApeKI	GCWGC	1 cut(s)	338
ApoI	RAATTY	2 cut(s)	311, 344
Asp700I	GAANNNNTTC	1 cut(s)	245
AspLEI	GCGC	2 cut(s)	156, 210
AspS9I	GGNCC	1 cut(s)	376
AvaII	GGWCC	1 cut(s)	376
BbvI	GCAGC	1 cut(s)	325
BccI	CCATC	1 cut(s)	257
BfaI	CTAG	2 cut(s)	107, 114
BfoI	RGCGCY	1 cut(s)	157
BfuAI	ACCTGC	1 cut(s)	82
BisI	GCNGC	2 cut(s)	25, 339
BlsI	GCNGC	2 cut(s)	26, 340
Bme18I	GGWCC	1 cut(s)	376
BmgT120I	GGNCC	1 cut(s)	376
BmiI	GGNNCC	1 cut(s)	423
BmsI	GCATC	1 cut(s)	19
BplI	GAGNNNNNCTC	2 cut(s)	311, 343
BsaJI	CCNNGG	1 cut(s)	181
Bsc4I	CCNNNNNNNGG	2 cut(s)	91, 187
BseDI	CCNNGG	1 cut(s)	181
BseLI	CCNNNNNNNGG	2 cut(s)	91, 187
BseMII	CTCAG	1 cut(s)	5
BseXI	GCAGC	1 cut(s)	325
Bsh1236I	CGCG	1 cut(s)	210
BshFI	GGCC	1 cut(s)	267
BsiSI	CCGG	1 cut(s)	388
BslI	CCNNNNNNNGG	2 cut(s)	91, 187
BsnI	GGCC	1 cut(s)	267
Bsp143I	GATC	1 cut(s)	435
BspACI	CCGC	2 cut(s)	24, 143
BspANI	GGCC	1 cut(s)	267
BspCNI	CTCAG	1 cut(s)	6
BspFNI	CGCG	1 cut(s)	210
BspLI	GGNNCC	1 cut(s)	423
BspMI	ACCTGC	1 cut(s)	82
BsrBI	CCGCTC	1 cut(s)	143
BssECI	CCNNGG	1 cut(s)	181
BssMI	GATC	1 cut(s)	435
BssT1I	CCWWGG	1 cut(s)	181
Bst4CI	ACNGT	1 cut(s)	229
BstC8I	GCNNGC	1 cut(s)	178
BstDEI	CTNAG	1 cut(s)	14
BstFNI	CGCG	1 cut(s)	210
BstH2I	RGCGCY	1 cut(s)	157
BstHHI	GCGC	2 cut(s)	156, 210
BstKTI	GATC	1 cut(s)	438
BstMBI	GATC	1 cut(s)	435
BstMWI	GCNNNNNNNGC	1 cut(s)	273
BstUI	CGCG	1 cut(s)	210
BstV1I	GCAGC	1 cut(s)	325
BsuRI	GGCC	1 cut(s)	267
BtgZI	GCGATG	1 cut(s)	42
BtsIMutI	CAGTG	1 cut(s)	225
BveI	ACCTGC	1 cut(s)	82
Cac8I	GCNNGC	1 cut(s)	178
CaiI	CAGNNNCTG	1 cut(s)	338
CfoI	GCGC	2 cut(s)	156, 210
Cfr13I	GGNCC	1 cut(s)	376
CviAII	CATG	1 cut(s)	98
CviJI	RGCY	8 cut(s)	38, 64, 106, 180, 267, 276, 338, 391
CviKI_1	RGCY	8 cut(s)	38, 64, 106, 180, 267, 276, 338, 391
DdeI	CTNAG	1 cut(s)	14
DpnI	GATC	1 cut(s)	437
DpnII	GATC	1 cut(s)	435
DrdI	GACNNNNNNGTC	1 cut(s)	383
DseDI	GACNNNNNNGTC	1 cut(s)	383
Eco130I	CCWWGG	1 cut(s)	181
Eco47I	GGWCC	1 cut(s)	376
EcoRI	GAATTC	1 cut(s)	311
EcoT14I	CCWWGG	1 cut(s)	181
ErhI	CCWWGG	1 cut(s)	181
FaeI	CATG	1 cut(s)	101
FaiI	YATR	7 cut(s)	21, 99, 201, 405, 427, 429, 431
FatI	CATG	1 cut(s)	97
Fnu4HI	GCNGC	2 cut(s)	25, 339
Fsp4HI	GCNGC	2 cut(s)	25, 339
FspBI	CTAG	2 cut(s)	107, 114
GlaI	GCGC	2 cut(s)	155, 209
GluI	GCNGC	2 cut(s)	25, 339
HaeII	RGCGCY	1 cut(s)	157
HaeIII	GGCC	1 cut(s)	267
HapII	CCGG	1 cut(s)	388
HhaI	GCGC	2 cut(s)	156, 210
Hin1II	CATG	1 cut(s)	101
Hin6I	GCGC	2 cut(s)	154, 208
HinP1I	GCGC	2 cut(s)	154, 208
HindIII	AAGCTT	1 cut(s)	36
HinfI	GANTC	2 cut(s)	45, 74
HpaII	CCGG	1 cut(s)	388
Hpy188I	TCNGA	1 cut(s)	15
Hpy188III	TCNNGA	1 cut(s)	302
HpyAV	CCTTC	1 cut(s)	280
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4V	TGCA	5 cut(s)	91, 196, 220, 357, 433
HpyF10VI	GCNNNNNNNGC	1 cut(s)	273
HpyF3I	CTNAG	1 cut(s)	14
Hsp92II	CATG	1 cut(s)	101
HspAI	GCGC	2 cut(s)	154, 208
Kzo9I	GATC	1 cut(s)	435
LmnI	GCTCC	2 cut(s)	69, 335
LpnPI	CCDG	6 cut(s)	77, 264, 281, 318, 401, 424
Lsp1109I	GCAGC	1 cut(s)	325
LweI	GCATC	1 cut(s)	19
MaeI	CTAG	2 cut(s)	107, 114
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	1 cut(s)	437
MbiI	CCGCTC	1 cut(s)	143
MboI	GATC	1 cut(s)	435
MboII	GAAGA	2 cut(s)	250, 303
MfeI	CAATTG	1 cut(s)	448
MluCI	AATT	3 cut(s)	311, 344, 448
MmeI	TCCRAC	2 cut(s)	152, 393
MnlI	CCTC	4 cut(s)	19, 80, 144, 483
MroXI	GAANNNNTTC	1 cut(s)	245
MspI	CCGG	1 cut(s)	388
MunI	CAATTG	1 cut(s)	448
MvnI	CGCG	1 cut(s)	210
MwoI	GCNNNNNNNGC	1 cut(s)	273
NdeII	GATC	1 cut(s)	435
NlaIII	CATG	1 cut(s)	101
NlaIV	GGNNCC	1 cut(s)	423
NmuCI	GTSAC	1 cut(s)	253
PdmI	GAANNNNTTC	1 cut(s)	245
PfeI	GAWTC	2 cut(s)	45, 74
PkrI	GCNGC	2 cut(s)	26, 340
PspN4I	GGNNCC	1 cut(s)	423
PspPI	GGNCC	1 cut(s)	376
PstNI	CAGNNNCTG	1 cut(s)	338
SatI	GCNGC	2 cut(s)	25, 339
Sau3AI	GATC	1 cut(s)	435
Sau96I	GGNCC	1 cut(s)	376
SetI	ASST	9 cut(s)	11, 40, 66, 96, 108, 278, 340, 423, 494
SfaNI	GCATC	1 cut(s)	19
SinI	GGWCC	1 cut(s)	376
Sse9I	AATT	3 cut(s)	311, 344, 448
SsiI	CCGC	2 cut(s)	24, 143
SspMI	CTAG	2 cut(s)	107, 114
StyI	CCWWGG	1 cut(s)	181
TaaI	ACNGT	1 cut(s)	229
TaqI	TCGA	1 cut(s)	72
TasI	AATT	3 cut(s)	311, 344, 448
TauI	GCSGC	1 cut(s)	27
TfiI	GAWTC	2 cut(s)	45, 74
TscAI	CASTG	1 cut(s)	232
TseFI	GTSAC	1 cut(s)	253
TseI	GCWGC	1 cut(s)	338
Tsp45I	GTSAC	1 cut(s)	253
TspDTI	ATGAA	1 cut(s)	86
TspGWI	ACGGA	1 cut(s)	221
TspRI	CASTG	1 cut(s)	232
VpaK11BI	GGWCC	1 cut(s)	376
XapI	RAATTY	2 cut(s)	311, 344
XmnI	GAANNNNTTC	1 cut(s)	245
XspI	CTAG	2 cut(s)	107, 114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.