Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0015254

Physical Location & Seq

Genomic Coordinates Reverse (-)

742196 .. 744841

Gene Structure 2646 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G006800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGAGACCTCTTTGAGATATGGTGGAGATGCTAAAGCCTTAAAAATTCATGCGAAGGAGAAGCTACCACTCGATTCCAAAACCCATTTGCAGATTCACGGAGAGCTAGATACTAGACTTGGAGTTCCAACTTTTGGTAGAGCTGTTGTAAGGCGCTTCTACCCAGATTTTTCGGCAAGCCTTGGAGTTGGACTGCAGTATGATAGGCGCGAGAAACTACGGTACACTGTCCGAGCGAAAAAGTCCTTCCCTGTGACAACGGATGGGCTGTTGAGCTTTAATGTTAAAGGAAGATGCGATCTCGACAAAGAATTTAAAGAGAGAAGCTCCACAGGAGCTGCTGAATTTTCTTGGAGCATTTTGAACTTTCAAAGGGACCAAGATGTCAGGCTCAAACTTGGCTATGACTTGTTGGACAAGGTCCCATATATGCAGATCAGGGAAAACAATTGGACCCTCAATGCTGATGGTAATGGTAAATGGAACGTGAGTATTTTGCATGTCTCCCAGATTTTAATCTCAATTTGTGACCCCAAGGCCATAAATCTTTTGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005253 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008308 GO:0008509 GO:0009507 GO:0009513 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0015075 GO:0015103 GO:0015267 GO:0015288 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0019867 GO:0022803 GO:0022829 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032879 GO:0034220 GO:0034425 GO:0034426 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0044070 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0051049 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0098588 GO:0098656 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

186

Amino Acids

21.06

Weight (kDa)

9.44

Isoelectric Point (pI)

31.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20816 AT1G76405 AT1G76405
fragaria_vesca	FvH4_5g25920
malus_domestica	MD06G1005500.v1.1
prunus_persica	Prupe.5G006800_v2.0.a1 Prupe.5G006800_v2.0.a1
pyrus_communis	pycom06g00510
rosa_chinensis	RchiOBHm_Chr7g0216421
rosa_laevigata	RLG00000002571
rosa_multiflora	Rmu_sc0038813.1_g000002
rosa_roxburghii	Rroxscaffold_3G00243250
rosa_rugosa	Rorug07G0160300
rosa_samantha	Rh7BG290800 Rh7DG300600
rosa_wichuraiana	Rw7G025440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	383
AccB7I	CCANNNNNTGG	1 cut(s)	134
AccII	CGCG	1 cut(s)	210
AcsI	RAATTY	3 cut(s)	45, 311, 344
AfaI	GTAC	1 cut(s)	224
AfiI	CCNNNNNNNGG	1 cut(s)	134
AgsI	TTSAA	2 cut(s)	364, 371
AluBI	AGCT	6 cut(s)	64, 106, 143, 276, 327, 338
AluI	AGCT	6 cut(s)	64, 106, 143, 276, 327, 338
Alw26I	GTCTC	1 cut(s)	508
AlwNI	CAGNNNCTG	1 cut(s)	338
AoxI	GGCC	1 cut(s)	537
ApeKI	GCWGC	1 cut(s)	338
ApoI	RAATTY	3 cut(s)	45, 311, 344
AspLEI	GCGC	2 cut(s)	156, 210
AspS9I	GGNCC	3 cut(s)	376, 421, 453
AvaII	GGWCC	3 cut(s)	376, 421, 453
BbvI	GCAGC	1 cut(s)	325
BccI	CCATC	2 cut(s)	257, 461
BcoDI	GTCTC	1 cut(s)	508
BfaI	CTAG	2 cut(s)	107, 114
BfmI	CTRYAG	1 cut(s)	194
BfoI	RGCGCY	1 cut(s)	157
BisI	GCNGC	1 cut(s)	339
BlsI	GCNGC	1 cut(s)	340
Bme18I	GGWCC	3 cut(s)	376, 421, 453
BmgT120I	GGNCC	3 cut(s)	376, 421, 453
BmiI	GGNNCC	3 cut(s)	377, 423, 455
BmsI	GCATC	2 cut(s)	19, 284
BplI	GAGNNNNNCTC	2 cut(s)	311, 343
BsaBI	GATNNNNATC	1 cut(s)	515
BsaJI	CCNNGG	2 cut(s)	181, 534
Bsc4I	CCNNNNNNNGG	1 cut(s)	134
Bse8I	GATNNNNATC	1 cut(s)	515
BseDI	CCNNGG	2 cut(s)	181, 534
BseGI	GGATG	1 cut(s)	268
BseJI	GATNNNNATC	1 cut(s)	515
BseLI	CCNNNNNNNGG	1 cut(s)	134
BseXI	GCAGC	1 cut(s)	325
Bsh1236I	CGCG	1 cut(s)	210
BshFI	GGCC	1 cut(s)	539
BslFI	GGGAC	2 cut(s)	389, 407
BslI	CCNNNNNNNGG	1 cut(s)	134
BsmAI	GTCTC	1 cut(s)	508
BsmFI	GGGAC	2 cut(s)	389, 407
BsnI	GGCC	1 cut(s)	539
Bsp143I	GATC	2 cut(s)	298, 435
BspANI	GGCC	1 cut(s)	539
BspFNI	CGCG	1 cut(s)	210
BspHI	TCATGA	1 cut(s)	554
BspLI	GGNNCC	3 cut(s)	377, 423, 455
BspMAI	CTGCAG	1 cut(s)	198
BssECI	CCNNGG	2 cut(s)	181, 534
BssMI	GATC	2 cut(s)	298, 435
BssT1I	CCWWGG	2 cut(s)	181, 534
Bst4CI	ACNGT	2 cut(s)	222, 229
BstC8I	GCNNGC	1 cut(s)	178
BstF5I	GGATG	1 cut(s)	268
BstFNI	CGCG	1 cut(s)	210
BstH2I	RGCGCY	1 cut(s)	157
BstHHI	GCGC	2 cut(s)	156, 210
BstKTI	GATC	2 cut(s)	301, 438
BstMAI	GTCTC	1 cut(s)	508
BstMBI	GATC	2 cut(s)	298, 435
BstNSI	RCATGY	1 cut(s)	503
BstSFI	CTRYAG	1 cut(s)	194
BstUI	CGCG	1 cut(s)	210
BstV1I	GCAGC	1 cut(s)	325
BsuRI	GGCC	1 cut(s)	539
BtsCI	GGATG	1 cut(s)	268
BtsIMutI	CAGTG	1 cut(s)	225
Cac8I	GCNNGC	1 cut(s)	178
CaiI	CAGNNNCTG	1 cut(s)	338
CciI	TCATGA	1 cut(s)	554
CfoI	GCGC	2 cut(s)	156, 210
Cfr13I	GGNCC	3 cut(s)	376, 421, 453
Csp6I	GTAC	1 cut(s)	223
CviAII	CATG	3 cut(s)	50, 500, 555
CviQI	GTAC	1 cut(s)	223
DpnI	GATC	2 cut(s)	300, 437
DpnII	GATC	2 cut(s)	298, 435
DraI	TTTAAA	1 cut(s)	316
DrdI	GACNNNNNNGTC	1 cut(s)	383
DseDI	GACNNNNNNGTC	1 cut(s)	383
Eco130I	CCWWGG	2 cut(s)	181, 534
Eco47I	GGWCC	3 cut(s)	376, 421, 453
EcoO109I	RGGNCCY	1 cut(s)	421
EcoT14I	CCWWGG	2 cut(s)	181, 534
ErhI	CCWWGG	2 cut(s)	181, 534
FaeI	CATG	3 cut(s)	53, 503, 558
FaqI	GGGAC	2 cut(s)	389, 407
FatI	CATG	3 cut(s)	49, 499, 554
Fnu4HI	GCNGC	1 cut(s)	339
FokI	GGATG	1 cut(s)	275
Fsp4HI	GCNGC	1 cut(s)	339
FspBI	CTAG	2 cut(s)	107, 114
GlaI	GCGC	2 cut(s)	155, 209
GluI	GCNGC	1 cut(s)	339
HaeII	RGCGCY	1 cut(s)	157
HaeIII	GGCC	1 cut(s)	539
HhaI	GCGC	2 cut(s)	156, 210
Hin1II	CATG	3 cut(s)	53, 503, 558
Hin6I	GCGC	2 cut(s)	154, 208
HinP1I	GCGC	2 cut(s)	154, 208
HinfI	GANTC	2 cut(s)	74, 94
Hpy166II	GTNNAC	1 cut(s)	225
Hpy188I	TCNGA	1 cut(s)	233
Hpy188III	TCNNGA	2 cut(s)	302, 555
Hpy8I	GTNNAC	1 cut(s)	225
HpyAV	CCTTC	2 cut(s)	49, 256
HpyCH4III	ACNGT	2 cut(s)	222, 229
HpyCH4IV	ACGT	1 cut(s)	486
HpyCH4V	TGCA	4 cut(s)	91, 196, 433, 499
HpySE526I	ACGT	1 cut(s)	486
Hsp92II	CATG	3 cut(s)	53, 503, 558
HspAI	GCGC	2 cut(s)	154, 208
Kzo9I	GATC	2 cut(s)	298, 435
LmnI	GCTCC	3 cut(s)	332, 335, 354
LpnPI	CCDG	6 cut(s)	177, 264, 318, 373, 424, 521
Lsp1109I	GCAGC	1 cut(s)	325
LweI	GCATC	2 cut(s)	19, 284
MaeI	CTAG	2 cut(s)	107, 114
MaeII	ACGT	1 cut(s)	486
MaeIII	GTNAC	2 cut(s)	253, 527
MalI	GATC	2 cut(s)	300, 437
MboI	GATC	2 cut(s)	298, 435
MboII	GAAGA	1 cut(s)	303
MfeI	CAATTG	1 cut(s)	448
MluCI	AATT	5 cut(s)	45, 311, 344, 448, 522
MmeI	TCCRAC	3 cut(s)	152, 169, 393
MnlI	CCTC	2 cut(s)	19, 467
MseI	TTAA	5 cut(s)	41, 279, 285, 315, 515
MunI	CAATTG	1 cut(s)	448
MvnI	CGCG	1 cut(s)	210
NdeII	GATC	2 cut(s)	298, 435
NlaIII	CATG	3 cut(s)	53, 503, 558
NlaIV	GGNNCC	3 cut(s)	377, 423, 455
NmuCI	GTSAC	2 cut(s)	253, 527
NspI	RCATGY	1 cut(s)	503
PagI	TCATGA	1 cut(s)	554
PfeI	GAWTC	2 cut(s)	74, 94
PflFI	GACNNNGTC	1 cut(s)	419
PflMI	CCANNNNNTGG	1 cut(s)	134
PkrI	GCNGC	1 cut(s)	340
PpuMI	RGGWCCY	1 cut(s)	421
Psp5II	RGGWCCY	1 cut(s)	421
PspN4I	GGNNCC	3 cut(s)	377, 423, 455
PspPI	GGNCC	3 cut(s)	376, 421, 453
PspPPI	RGGWCCY	1 cut(s)	421
PstI	CTGCAG	1 cut(s)	198
PstNI	CAGNNNCTG	1 cut(s)	338
PsyI	GACNNNGTC	1 cut(s)	419
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
SaqAI	TTAA	5 cut(s)	41, 279, 285, 315, 515
SatI	GCNGC	1 cut(s)	339
Sau3AI	GATC	2 cut(s)	298, 435
Sau96I	GGNCC	3 cut(s)	376, 421, 453
SetI	ASST	9 cut(s)	11, 66, 108, 145, 278, 329, 340, 423, 489
SfaNI	GCATC	2 cut(s)	19, 284
SfcI	CTRYAG	1 cut(s)	194
SinI	GGWCC	3 cut(s)	376, 421, 453
Sse9I	AATT	5 cut(s)	45, 311, 344, 448, 522
SspMI	CTAG	2 cut(s)	107, 114
StyI	CCWWGG	2 cut(s)	181, 534
TaaI	ACNGT	2 cut(s)	222, 229
TaiI	ACGT	1 cut(s)	489
TaqI	TCGA	2 cut(s)	72, 303
TasI	AATT	5 cut(s)	45, 311, 344, 448, 522
TfiI	GAWTC	2 cut(s)	74, 94
Tru1I	TTAA	5 cut(s)	41, 279, 285, 315, 515
Tru9I	TTAA	5 cut(s)	41, 279, 285, 315, 515
TscAI	CASTG	1 cut(s)	232
TseFI	GTSAC	2 cut(s)	253, 527
TseI	GCWGC	1 cut(s)	338
Tsp45I	GTSAC	2 cut(s)	253, 527
TspDTI	ATGAA	1 cut(s)	38
TspGWI	ACGGA	2 cut(s)	114, 275
TspRI	CASTG	1 cut(s)	232
Tth111I	GACNNNGTC	1 cut(s)	419
Van91I	CCANNNNNTGG	1 cut(s)	134
VpaK11BI	GGWCC	3 cut(s)	376, 421, 453
XapI	RAATTY	3 cut(s)	45, 311, 344
XceI	RCATGY	1 cut(s)	503
XspI	CTAG	2 cut(s)	107, 114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.